RNA–Protein interactions for RNA: ENST00000269138.9

SS18-202, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,548 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-202ENST00000269138 VEGFAP15692 232 aaPredicted RBP15.69■□□□□ 0.1
SS18-202ENST00000269138 LRRCC1Q9C099 1032 aa15.69■□□□□ 0.1
SS18-202ENST00000269138 GPRC5DQ9NZD1 345 aa15.69■□□□□ 0.1
SS18-202ENST00000269138 WDR90Q96KV7 1748 aa15.69■□□□□ 0.1
SS18-202ENST00000269138 KIF3CO14782 793 aa15.68■□□□□ 0.1
SS18-202ENST00000269138 CLASRPQ8N2M8 674 aaKnown RBP15.68■□□□□ 0.1
SS18-202ENST00000269138 RWDD1Q9H446 243 aaPredicted RBP15.68■□□□□ 0.1
SS18-202ENST00000269138 GNL3LQ9NVN8 582 aaKnown RBP15.68■□□□□ 0.1
SS18-202ENST00000269138 CNOT7Q9UIV1 285 aaKnown RBP15.68■□□□□ 0.1
SS18-202ENST00000269138 HACL1Q9UJ83 578 aa15.68■□□□□ 0.1
SS18-202ENST00000269138 COL1A1P02452 1464 aaPredicted RBP15.68■□□□□ 0.1
SS18-202ENST00000269138 RPS12P25398 132 aaKnown RBP15.68■□□□□ 0.1
SS18-202ENST00000269138 SCARF1Q14162 830 aa15.68■□□□□ 0.1
SS18-202ENST00000269138 GRIK5Q16478 980 aa15.68■□□□□ 0.1
SS18-202ENST00000269138 MICALL2Q8IY33 904 aa15.68■□□□□ 0.1
SS18-202ENST00000269138 AGBL3Q8NEM8 1001 aa15.68■□□□□ 0.1
SS18-202ENST00000269138 DPF2Q92785 391 aa15.68■□□□□ 0.1
SS18-202ENST00000269138 TAF1DQ9H5J8 278 aaPredicted RBP15.68■□□□□ 0.1
SS18-202ENST00000269138 ARAP2Q8WZ64 1704 aa15.67■□□□□ 0.1
SS18-202ENST00000269138 LMOD1P29536 600 aaPredicted RBP15.67■□□□□ 0.1
SS18-202ENST00000269138 EPHX2P34913 555 aa15.67■□□□□ 0.1
SS18-202ENST00000269138 RASGRF1Q13972 1273 aa15.67■□□□□ 0.1
SS18-202ENST00000269138 MFSD14BQ5SR56 506 aa15.67■□□□□ 0.1
SS18-202ENST00000269138 KIAA0825Q8IV33 1275 aa15.67■□□□□ 0.1
SS18-202ENST00000269138 ZNF646O15015 1829 aaPredicted RBP15.66■□□□□ 0.1
SS18-202ENST00000269138 IQCA1LA6NCM1 817 aa15.66■□□□□ 0.1
SS18-202ENST00000269138 F8W031 263 aaPredicted RBP15.66■□□□□ 0.1
SS18-202ENST00000269138 EGFRP00533 1210 aa15.66■□□□□ 0.1
SS18-202ENST00000269138 IFIT2P09913 472 aaKnown RBP15.66■□□□□ 0.1
SS18-202ENST00000269138 ARID4AP29374 1257 aaPredicted RBP15.66■□□□□ 0.1
SS18-202ENST00000269138 TTC39AQ5SRH9 613 aa15.66■□□□□ 0.1
SS18-202ENST00000269138 PI16Q6UXB8 463 aa15.66■□□□□ 0.1
SS18-202ENST00000269138 SAMD7Q7Z3H4 446 aa15.66■□□□□ 0.1
SS18-202ENST00000269138 DENND2AQ9ULE3 1009 aa15.66■□□□□ 0.1
SS18-202ENST00000269138 USP17L8P0C7I0 530 aa15.65■□□□□ 0.1
SS18-202ENST00000269138 POTEIP0CG38 1075 aa15.65■□□□□ 0.1
SS18-202ENST00000269138 POTEJP0CG39 1038 aa15.65■□□□□ 0.1
SS18-202ENST00000269138 MCAMP43121 646 aa15.65■□□□□ 0.1
SS18-202ENST00000269138 FKBP1AP62942 108 aaKnown RBP15.65■□□□□ 0.1
SS18-202ENST00000269138 CCDC158Q5M9N0 1113 aa15.65■□□□□ 0.1
SS18-202ENST00000269138 ANKRD45Q5TZF3 282 aa15.65■□□□□ 0.1
SS18-202ENST00000269138 C16orf71Q8IYS4 520 aaPredicted RBP15.65■□□□□ 0.1
SS18-202ENST00000269138 TRPM4Q8TD43 1214 aa15.65■□□□□ 0.1
SS18-202ENST00000269138 GCC1Q96CN9 775 aa15.65■□□□□ 0.1
SS18-202ENST00000269138 SNRKQ9NRH2 765 aa15.65■□□□□ 0.1
SS18-202ENST00000269138 HMG20BQ9P0W2 317 aa15.65■□□□□ 0.1
SS18-202ENST00000269138 PSME4Q14997 1843 aa15.65■□□□□ 0.1
SS18-202ENST00000269138 H7C1D1 291 aa15.64■□□□□ 0.09
SS18-202ENST00000269138 SEMA3EO15041 775 aa15.64■□□□□ 0.09
SS18-202ENST00000269138 UQCRFS1P1P0C7P4 283 aa15.64■□□□□ 0.09
SS18-202ENST00000269138 HIRAP54198 1017 aaPredicted RBP15.64■□□□□ 0.09
SS18-202ENST00000269138 ZNF280AP59817 542 aaPredicted RBP15.64■□□□□ 0.09
SS18-202ENST00000269138 TBC1D10BQ4KMP7 808 aaPredicted RBP15.64■□□□□ 0.09
SS18-202ENST00000269138 EAPPQ56P03 285 aaPredicted RBP15.64■□□□□ 0.09
SS18-202ENST00000269138 RBM26Q5T8P6 1007 aaKnown RBP15.64■□□□□ 0.09
SS18-202ENST00000269138 SMC5Q8IY18 1101 aa15.64■□□□□ 0.09
SS18-202ENST00000269138 ADARB2Q9NS39 739 aaKnown RBP15.64■□□□□ 0.09
SS18-202ENST00000269138 MYO3BQ8WXR4 1341 aa15.64■□□□□ 0.09
SS18-202ENST00000269138 ZBTB22O15209 634 aa15.63■□□□□ 0.09
SS18-202ENST00000269138 NEFLP07196 543 aa15.63■□□□□ 0.09
SS18-202ENST00000269138 B4GALNT3Q6L9W6 998 aa15.63■□□□□ 0.09
SS18-202ENST00000269138 SPATA5Q8NB90 893 aa15.63■□□□□ 0.09
SS18-202ENST00000269138 WDR66Q8TBY9 1149 aa15.63■□□□□ 0.09
SS18-202ENST00000269138 OTUD7AQ8TE49 926 aaPredicted RBP15.63■□□□□ 0.09
SS18-202ENST00000269138 TBC1D9Q6ZT07 1266 aa15.63■□□□□ 0.09
SS18-202ENST00000269138 TBC1D22AQ8WUA7 517 aa15.63■□□□□ 0.09
SS18-202ENST00000269138 ZNF512BQ96KM6 892 aaPredicted RBP15.63■□□□□ 0.09
SS18-202ENST00000269138 NDUFB9Q9Y6M9 179 aa15.63■□□□□ 0.09
SS18-202ENST00000269138 MYOZ2Q9NPC6 264 aa15.62■□□□□ 0.09
SS18-202ENST00000269138 TTF2Q9UNY4 1162 aaKnown RBP15.62■□□□□ 0.09
SS18-202ENST00000269138 PCDHAC2Q9Y5I4 1007 aa15.62■□□□□ 0.09
SS18-202ENST00000269138 SCN4AP35499 1836 aa15.61■□□□□ 0.09
SS18-202ENST00000269138 PRDX5P30044 214 aa15.61■□□□□ 0.09
SS18-202ENST00000269138 ZAP70P43403 619 aa15.61■□□□□ 0.09
SS18-202ENST00000269138 TSHZ3Q63HK5 1081 aa15.61■□□□□ 0.09
SS18-202ENST00000269138 USP50Q70EL3 339 aaPredicted RBP15.61■□□□□ 0.09
SS18-202ENST00000269138 OGFOD1Q8N543 542 aa15.61■□□□□ 0.09
SS18-202ENST00000269138 PDS5AQ29RF7 1337 aaKnown RBP15.61■□□□□ 0.09
SS18-202ENST00000269138 SALL1Q9NSC2 1324 aa15.61■□□□□ 0.09
SS18-202ENST00000269138 KIF4BQ2VIQ3 1234 aa15.6■□□□□ 0.09
SS18-202ENST00000269138 PNMA8AQ86V59 439 aaPredicted RBP15.6■□□□□ 0.09
SS18-202ENST00000269138 LNPKQ9C0E8 428 aa15.6■□□□□ 0.09
SS18-202ENST00000269138 ABCF2Q9UG63 623 aa15.6■□□□□ 0.09
SS18-202ENST00000269138 HDAC9Q9UKV0 1011 aa15.6■□□□□ 0.09
SS18-202ENST00000269138 CLEC11AQ9Y240 323 aa15.6■□□□□ 0.09
SS18-202ENST00000269138 ASTN2O75129 1339 aaPredicted RBP15.6■□□□□ 0.09
SS18-202ENST00000269138 CYP2E1P05181 493 aaPredicted RBP15.59■□□□□ 0.09
SS18-202ENST00000269138 NUCB1Q02818 461 aa15.59■□□□□ 0.09
SS18-202ENST00000269138 TOMM70O94826 608 aa15.58■□□□□ 0.09
SS18-202ENST00000269138 LDHBP07195 334 aaKnown RBP15.58■□□□□ 0.09
SS18-202ENST00000269138 ATP5JP18859 108 aa15.58■□□□□ 0.09
SS18-202ENST00000269138 NBPF9Q3BBW0 867 aa15.58■□□□□ 0.09
SS18-202ENST00000269138 CFAP100Q494V2 611 aa15.58■□□□□ 0.09
SS18-202ENST00000269138 LDHDQ86WU2 507 aa15.58■□□□□ 0.09
SS18-202ENST00000269138 ZBED3Q96IU2 234 aaPredicted RBP15.58■□□□□ 0.09
SS18-202ENST00000269138 BOLA2Q9H3K6 86 aa15.58■□□□□ 0.09
SS18-202ENST00000269138 ANTXR1Q9H6X2 564 aa15.58■□□□□ 0.09
SS18-202ENST00000269138 PIH1D3Q9NQM4 214 aaKnown RBP15.58■□□□□ 0.09
SS18-202ENST00000269138 ZBTB47Q9UFB7 747 aaPredicted RBP15.58■□□□□ 0.09
SS18-202ENST00000269138 SUGT1Q9Y2Z0 365 aa15.58■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms