RNA–Protein interactions for RNA: ENST00000265081.6

MSH3-201, Transcript of mutS homolog 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MSH3, Length 4,092 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3-201ENST00000265081 ZKSCAN5Q9Y2L8 839 aa13.17□□□□□ -0.3
MSH3-201ENST00000265081 VPS37CA5D8V6 355 aaPredicted RBP13.17□□□□□ -0.3
MSH3-201ENST00000265081 NTSR2O95665 410 aa13.17□□□□□ -0.3
MSH3-201ENST00000265081 FGAP02671 866 aa13.17□□□□□ -0.3
MSH3-201ENST00000265081 ZSCAN25Q6NSZ9 544 aa13.17□□□□□ -0.3
MSH3-201ENST00000265081 CCDC39Q9UFE4 941 aa13.17□□□□□ -0.3
MSH3-201ENST00000265081 RCOR1Q9UKL0 485 aa13.17□□□□□ -0.3
MSH3-201ENST00000265081 TERF1P54274 439 aa13.17□□□□□ -0.3
MSH3-201ENST00000265081 LPIN2Q92539 896 aa13.17□□□□□ -0.3
MSH3-201ENST00000265081 CCDC87Q9NVE4 849 aa13.17□□□□□ -0.3
MSH3-201ENST00000265081 PUM3Q15397 648 aaKnown RBP13.16□□□□□ -0.3
MSH3-201ENST00000265081 PARP10Q53GL7 1025 aa13.16□□□□□ -0.3
MSH3-201ENST00000265081 MARCH10Q8NA82 808 aaPredicted RBP13.16□□□□□ -0.3
MSH3-201ENST00000265081 UQCRFS1P1P0C7P4 283 aa13.16□□□□□ -0.3
MSH3-201ENST00000265081 CLSTN2Q9H4D0 955 aa13.16□□□□□ -0.3
MSH3-201ENST00000265081 PIH1D3Q9NQM4 214 aaKnown RBP13.16□□□□□ -0.3
MSH3-201ENST00000265081 PTPDC1A2A3K4 754 aa13.16□□□□□ -0.3
MSH3-201ENST00000265081 APOBRQ0VD83 1088 aa13.16□□□□□ -0.3
MSH3-201ENST00000265081 DDX19AQ9NUU7 478 aaKnown RBP13.16□□□□□ -0.3
MSH3-201ENST00000265081 TTLL5Q6EMB2 1281 aa13.15□□□□□ -0.3
MSH3-201ENST00000265081 LDHAL6AQ6ZMR3 332 aa13.15□□□□□ -0.3
MSH3-201ENST00000265081 LIG1P18858 919 aa13.15□□□□□ -0.3
MSH3-201ENST00000265081 METTL24Q5JXM2 366 aa13.15□□□□□ -0.3
MSH3-201ENST00000265081 SUSD4Q5VX71 490 aa13.15□□□□□ -0.3
MSH3-201ENST00000265081 CCDC102BQ68D86 513 aa13.15□□□□□ -0.3
MSH3-201ENST00000265081 ZNF804BA4D1E1 1349 aa13.15□□□□□ -0.3
MSH3-201ENST00000265081 GPAA1O43292 621 aa13.15□□□□□ -0.3
MSH3-201ENST00000265081 OFD1O75665 1012 aa13.15□□□□□ -0.3
MSH3-201ENST00000265081 IMMTQ16891 758 aaKnown RBP13.15□□□□□ -0.3
MSH3-201ENST00000265081 DDX24Q9GZR7 859 aaKnown RBP eCLIP13.15□□□□□ -0.35e-6■■■■■ 34.6
MSH3-201ENST00000265081 DUOX1Q9NRD9 1551 aa13.15□□□□□ -0.31
MSH3-201ENST00000265081 CRKLP46109 303 aaKnown RBP13.14□□□□□ -0.31
MSH3-201ENST00000265081 ITPK1Q13572 414 aa13.14□□□□□ -0.31
MSH3-201ENST00000265081 KDM4AO75164 1064 aa13.14□□□□□ -0.31
MSH3-201ENST00000265081 STK3Q13188 491 aa13.14□□□□□ -0.31
MSH3-201ENST00000265081 TRMT112Q9UI30 125 aaKnown RBP13.14□□□□□ -0.31
MSH3-201ENST00000265081 MRVI1Q9Y6F6 885 aa13.14□□□□□ -0.31
MSH3-201ENST00000265081 FOXD4L6Q3SYB3 417 aaPredicted RBP13.14□□□□□ -0.31
MSH3-201ENST00000265081 PI16Q6UXB8 463 aa13.14□□□□□ -0.31
MSH3-201ENST00000265081 FOXD4L3Q6VB84 417 aaPredicted RBP13.14□□□□□ -0.31
MSH3-201ENST00000265081 PNPLA7Q6ZV29 1317 aa13.14□□□□□ -0.31
MSH3-201ENST00000265081 FKBP4Q02790 459 aaKnown RBP eCLIP13.13□□□□□ -0.31
MSH3-201ENST00000265081 SPATA32Q96LK8 384 aa13.13□□□□□ -0.31
MSH3-201ENST00000265081 CFAP45Q9UL16 551 aa13.13□□□□□ -0.31
MSH3-201ENST00000265081 TNRC6CQ9HCJ0 1690 aaKnown RBP13.13□□□□□ -0.31
MSH3-201ENST00000265081 COL1A1P02452 1464 aaPredicted RBP13.13□□□□□ -0.31
MSH3-201ENST00000265081 ENGASEQ8NFI3 743 aa13.13□□□□□ -0.31
MSH3-201ENST00000265081 TAF1P21675 1872 aa13.13□□□□□ -0.31
MSH3-201ENST00000265081 AP5Z1O43299 807 aa13.13□□□□□ -0.31
MSH3-201ENST00000265081 GPTP24298 496 aa13.13□□□□□ -0.31
MSH3-201ENST00000265081 MTA3Q9BTC8 594 aa13.13□□□□□ -0.31
MSH3-201ENST00000265081 USP25Q9UHP3 1055 aa13.13□□□□□ -0.31
MSH3-201ENST00000265081 SNW1Q13573 536 aaKnown RBP13.13□□□□□ -0.31
MSH3-201ENST00000265081 CLEC4GQ6UXB4 293 aa13.13□□□□□ -0.31
MSH3-201ENST00000265081 KIF3AQ9Y496 699 aa13.13□□□□□ -0.31
MSH3-201ENST00000265081 LOC102724428A0A0B4J2F2 783 aa13.12□□□□□ -0.31
MSH3-201ENST00000265081 DTNBO60941 627 aa13.12□□□□□ -0.31
MSH3-201ENST00000265081 SIK1P57059 783 aa13.12□□□□□ -0.31
MSH3-201ENST00000265081 FAM173BQ6P4H8 233 aa13.12□□□□□ -0.31
MSH3-201ENST00000265081 NCOA7Q8NI08 942 aa13.12□□□□□ -0.31
MSH3-201ENST00000265081 STRBPQ96SI9 672 aaKnown RBP13.12□□□□□ -0.31
MSH3-201ENST00000265081 LRRC2Q9BYS8 371 aa13.12□□□□□ -0.31
MSH3-201ENST00000265081 DDX60LQ5H9U9 1706 aaKnown RBP13.12□□□□□ -0.31
MSH3-201ENST00000265081 NEDD4P46934 1319 aa13.12□□□□□ -0.31
MSH3-201ENST00000265081 CNTNAP4Q9C0A0 1308 aa13.12□□□□□ -0.31
MSH3-201ENST00000265081 PDE6AP16499 860 aa13.12□□□□□ -0.31
MSH3-201ENST00000265081 PHKA1P46020 1223 aa13.12□□□□□ -0.31
MSH3-201ENST00000265081 GIMAP6Q6P9H5 292 aa13.12□□□□□ -0.31
MSH3-201ENST00000265081 NKX2-3Q8TAU0 364 aa13.12□□□□□ -0.31
MSH3-201ENST00000265081 DDB1Q16531 1140 aa13.12□□□□□ -0.31
MSH3-201ENST00000265081 SGMS1Q86VZ5 419 aa13.12□□□□□ -0.31
MSH3-201ENST00000265081 TBC1D10CQ8IV04 446 aa13.12□□□□□ -0.31
MSH3-201ENST00000265081 UTP14AQ9BVJ6 771 aaKnown RBP13.12□□□□□ -0.31
MSH3-201ENST00000265081 RTEL1Q9NZ71 1219 aa13.12□□□□□ -0.31
MSH3-201ENST00000265081 PDS5AQ29RF7 1337 aaKnown RBP13.11□□□□□ -0.31
MSH3-201ENST00000265081 SH2B2O14492 632 aaPredicted RBP13.11□□□□□ -0.31
MSH3-201ENST00000265081 HCLS1P14317 486 aaPredicted RBP13.11□□□□□ -0.31
MSH3-201ENST00000265081 FERMT3Q86UX7 667 aa13.11□□□□□ -0.31
MSH3-201ENST00000265081 NUP62CLQ9H1M0 184 aa13.11□□□□□ -0.31
MSH3-201ENST00000265081 CCDC88AQ3V6T2 1871 aa13.11□□□□□ -0.31
MSH3-201ENST00000265081 CCDC192P0DO97 292 aa13.11□□□□□ -0.31
MSH3-201ENST00000265081 MAP3K11Q16584 847 aa13.11□□□□□ -0.31
MSH3-201ENST00000265081 TAF7LQ5H9L4 462 aa13.11□□□□□ -0.31
MSH3-201ENST00000265081 PRC1O43663 620 aa13.11□□□□□ -0.31
MSH3-201ENST00000265081 CAVIN2O95810 425 aa13.11□□□□□ -0.31
MSH3-201ENST00000265081 LRRC37AA6NMS7 1700 aa13.11□□□□□ -0.31
MSH3-201ENST00000265081 SPATA5Q8NB90 893 aa13.1□□□□□ -0.31
MSH3-201ENST00000265081 FAM200AQ8TCP9 573 aa13.1□□□□□ -0.31
MSH3-201ENST00000265081 CNNM1Q9NRU3 951 aa13.1□□□□□ -0.31
MSH3-201ENST00000265081 ZNF532Q9HCE3 1301 aa13.1□□□□□ -0.31
MSH3-201ENST00000265081 HSP90B1P14625 803 aaKnown RBP13.1□□□□□ -0.31
MSH3-201ENST00000265081 RNF214Q8ND24 703 aa13.1□□□□□ -0.31
MSH3-201ENST00000265081 EPB41L4AQ9HCS5 686 aaPredicted RBP13.1□□□□□ -0.31
MSH3-201ENST00000265081 TACC3Q9Y6A5 838 aa13.1□□□□□ -0.31
MSH3-201ENST00000265081 STK36Q9NRP7 1315 aa13.1□□□□□ -0.31
MSH3-201ENST00000265081 A0A1W2PQ27 194 aa13.1□□□□□ -0.31
MSH3-201ENST00000265081 A0A1W2PQ64 194 aa13.1□□□□□ -0.31
MSH3-201ENST00000265081 A0A1W2PQD8 194 aa13.1□□□□□ -0.31
MSH3-201ENST00000265081 NR1I2O75469 434 aa13.1□□□□□ -0.31
MSH3-201ENST00000265081 SF3B3Q15393 1217 aaKnown RBP13.1□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms