RNA–Protein interactions for RNA: ENST00000263066.10

LDB3-201, Transcript of LIM domain binding 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LDB3, Length 3,873 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3-201ENST00000263066 NUTM1Q86Y26 1132 aa9.61□□□□□ -0.87
LDB3-201ENST00000263066 DCAF5Q96JK2 942 aa9.61□□□□□ -0.87
LDB3-201ENST00000263066 MPHOSPH8Q99549 860 aa9.61□□□□□ -0.87
LDB3-201ENST00000263066 DNAJC25Q9H1X3 360 aa9.61□□□□□ -0.87
LDB3-201ENST00000263066 PDE11AQ9HCR9 933 aa9.61□□□□□ -0.87
LDB3-201ENST00000263066 GNL3LQ9NVN8 582 aaKnown RBP9.61□□□□□ -0.87
LDB3-201ENST00000263066 CEP170BQ9Y4F5 1589 aaPredicted RBP9.61□□□□□ -0.87
LDB3-201ENST00000263066 TOPAZ1Q8N9V7 1692 aa9.61□□□□□ -0.87
LDB3-201ENST00000263066 RBM5P52756 815 aaKnown RBP eCLIP9.61□□□□□ -0.87
LDB3-201ENST00000263066 TYRO3Q06418 890 aa9.61□□□□□ -0.87
LDB3-201ENST00000263066 DEFB132Q7Z7B7 95 aa9.61□□□□□ -0.87
LDB3-201ENST00000263066 FAM89AQ96GI7 184 aa9.61□□□□□ -0.87
LDB3-201ENST00000263066 RUFY1Q96T51 708 aa9.61□□□□□ -0.87
LDB3-201ENST00000263066 TRIM35Q9UPQ4 493 aa9.61□□□□□ -0.87
LDB3-201ENST00000263066 NIP7Q9Y221 180 aaKnown RBP eCLIP9.61□□□□□ -0.87
LDB3-201ENST00000263066 ATP2C2O75185 946 aa9.61□□□□□ -0.87
LDB3-201ENST00000263066 IFIT2P09913 472 aaKnown RBP9.61□□□□□ -0.87
LDB3-201ENST00000263066 TRIM27P14373 513 aa9.61□□□□□ -0.87
LDB3-201ENST00000263066 CEBPZQ03701 1054 aaKnown RBP9.61□□□□□ -0.87
LDB3-201ENST00000263066 CCDC181Q5TID7 509 aa9.61□□□□□ -0.87
LDB3-201ENST00000263066 KRT27Q7Z3Y8 459 aa9.61□□□□□ -0.87
LDB3-201ENST00000263066 EPC1Q9H2F5 836 aa9.61□□□□□ -0.87
LDB3-201ENST00000263066 KIF3CO14782 793 aa9.6□□□□□ -0.87
LDB3-201ENST00000263066 CYP27B1O15528 508 aa9.6□□□□□ -0.87
LDB3-201ENST00000263066 DTNBO60941 627 aa9.6□□□□□ -0.87
LDB3-201ENST00000263066 ELF1P32519 619 aa9.6□□□□□ -0.87
LDB3-201ENST00000263066 GNG11P61952 73 aa9.6□□□□□ -0.87
LDB3-201ENST00000263066 SLC4A8Q2Y0W8 1093 aa9.6□□□□□ -0.87
LDB3-201ENST00000263066 ARMC3Q5W041 872 aa9.6□□□□□ -0.87
LDB3-201ENST00000263066 ANKRD13DQ6ZTN6 518 aa9.6□□□□□ -0.87
LDB3-201ENST00000263066 MICAL1Q8TDZ2 1067 aa9.6□□□□□ -0.87
LDB3-201ENST00000263066 ATF5Q9Y2D1 282 aaPredicted RBP9.6□□□□□ -0.87
LDB3-201ENST00000263066 KNDC1Q76NI1 1749 aa9.6□□□□□ -0.87
LDB3-201ENST00000263066 FER1L4A9Z1Z3 1794 aa9.6□□□□□ -0.87
LDB3-201ENST00000263066 CCT5P48643 541 aa9.6□□□□□ -0.87
LDB3-201ENST00000263066 IRX1P78414 480 aaPredicted RBP9.6□□□□□ -0.87
LDB3-201ENST00000263066 WWC2Q6AWC2 1192 aa9.6□□□□□ -0.87
LDB3-201ENST00000263066 KLHDC4Q8TBB5 520 aa9.6□□□□□ -0.87
LDB3-201ENST00000263066 DBF4Q9UBU7 674 aaPredicted RBP9.6□□□□□ -0.87
LDB3-201ENST00000263066 PHKG2P15735 406 aa9.6□□□□□ -0.87
LDB3-201ENST00000263066 ZKSCAN8Q15776 578 aaPredicted RBP9.6□□□□□ -0.87
LDB3-201ENST00000263066 DZIP3Q86Y13 1208 aaKnown RBP9.6□□□□□ -0.87
LDB3-201ENST00000263066 ARMC2Q8NEN0 867 aa9.6□□□□□ -0.87
LDB3-201ENST00000263066 ZFYVE9O95405 1425 aa9.6□□□□□ -0.87
LDB3-201ENST00000263066 ENO4A6NNW6 628 aa9.59□□□□□ -0.87
LDB3-201ENST00000263066 USP27XA6NNY8 438 aa9.59□□□□□ -0.87
LDB3-201ENST00000263066 ZNF75DP51815 510 aa9.59□□□□□ -0.87
LDB3-201ENST00000263066 EN1Q05925 392 aaPredicted RBP9.59□□□□□ -0.87
LDB3-201ENST00000263066 E2F5Q15329 346 aa9.59□□□□□ -0.87
LDB3-201ENST00000263066 MFSD4BQ5TF39 518 aa9.59□□□□□ -0.87
LDB3-201ENST00000263066 NBPF3Q9H094 633 aa9.59□□□□□ -0.87
LDB3-201ENST00000263066 FAN1Q9Y2M0 1017 aa9.59□□□□□ -0.87
LDB3-201ENST00000263066 EP400Q96L91 3159 aa9.59□□□□□ -0.87
LDB3-201ENST00000263066 DDIT3P35638 169 aa9.59□□□□□ -0.87
LDB3-201ENST00000263066 CCDC57Q2TAC2 916 aa9.59□□□□□ -0.87
LDB3-201ENST00000263066 TMC6Q7Z403 805 aa9.59□□□□□ -0.87
LDB3-201ENST00000263066 KIRREL3Q8IZU9 778 aa9.59□□□□□ -0.87
LDB3-201ENST00000263066 MEIS3Q99687 375 aa9.59□□□□□ -0.87
LDB3-201ENST00000263066 CRACR2AQ9BSW2 395 aa9.59□□□□□ -0.87
LDB3-201ENST00000263066 BICC1Q9H694 974 aaKnown RBP9.59□□□□□ -0.87
LDB3-201ENST00000263066 FHOD1Q9Y613 1164 aa9.59□□□□□ -0.87
LDB3-201ENST00000263066 PCDH11XQ9BZA7 1347 aa9.59□□□□□ -0.87
LDB3-201ENST00000263066 PCDH11YQ9BZA8 1340 aa9.59□□□□□ -0.87
LDB3-201ENST00000263066 NSD2O96028 1365 aa9.59□□□□□ -0.87
LDB3-201ENST00000263066 PES1O00541 588 aaKnown RBP9.59□□□□□ -0.87
LDB3-201ENST00000263066 SKAP2O75563 359 aaPredicted RBP9.59□□□□□ -0.87
LDB3-201ENST00000263066 PPP2R3AQ06190 1150 aa9.59□□□□□ -0.87
LDB3-201ENST00000263066 SLFNL1Q499Z3 407 aa9.59□□□□□ -0.87
LDB3-201ENST00000263066 CNNM3Q8NE01 707 aa9.59□□□□□ -0.87
LDB3-201ENST00000263066 RSRC1Q96IZ7 334 aaKnown RBP9.59□□□□□ -0.87
LDB3-201ENST00000263066 SH3GL3Q99963 347 aa9.59□□□□□ -0.87
LDB3-201ENST00000263066 SNRKQ9NRH2 765 aa9.59□□□□□ -0.87
LDB3-201ENST00000263066 WDR17Q8IZU2 1322 aa9.59□□□□□ -0.87
LDB3-201ENST00000263066 AKAP17AQ02040 695 aaKnown RBP9.58□□□□□ -0.88
LDB3-201ENST00000263066 PROSER3Q2NL68 480 aa9.58□□□□□ -0.88
LDB3-201ENST00000263066 RTCBQ9Y3I0 505 aaKnown RBP9.58□□□□□ -0.88
LDB3-201ENST00000263066 ERC2O15083 957 aa9.58□□□□□ -0.88
LDB3-201ENST00000263066 FKBP4Q02790 459 aaKnown RBP eCLIP9.58□□□□□ -0.88
LDB3-201ENST00000263066 ARID5BQ14865 1188 aa9.58□□□□□ -0.88
LDB3-201ENST00000263066 CEP85LQ5SZL2 805 aa9.58□□□□□ -0.88
LDB3-201ENST00000263066 POTEDQ86YR6 584 aa9.58□□□□□ -0.88
LDB3-201ENST00000263066 CABS1Q96KC9 395 aa9.58□□□□□ -0.88
LDB3-201ENST00000263066 SDF4Q9BRK5 362 aa9.58□□□□□ -0.88
LDB3-201ENST00000263066 ABCF2Q9UG63 623 aa9.58□□□□□ -0.88
LDB3-201ENST00000263066 PA2G4Q9UQ80 394 aaKnown RBP9.58□□□□□ -0.88
LDB3-201ENST00000263066 ERCC3P19447 782 aa9.58□□□□□ -0.88
LDB3-201ENST00000263066 RANBP1P43487 201 aa9.58□□□□□ -0.88
LDB3-201ENST00000263066 KRT85P78386 507 aa9.58□□□□□ -0.88
LDB3-201ENST00000263066 ENOX2Q16206 610 aaKnown RBP9.58□□□□□ -0.88
LDB3-201ENST00000263066 FOXR1Q6PIV2 292 aa9.58□□□□□ -0.88
LDB3-201ENST00000263066 NFXL1Q6ZNB6 911 aa9.58□□□□□ -0.88
LDB3-201ENST00000263066 TTLL7Q6ZT98 887 aa9.58□□□□□ -0.88
LDB3-201ENST00000263066 CCDC8Q9H0W5 538 aaPredicted RBP9.58□□□□□ -0.88
LDB3-201ENST00000263066 PUF60Q9UHX1 559 aaKnown RBP9.58□□□□□ -0.88
LDB3-201ENST00000263066 HNRNPH1P31943 449 aaKnown RBP9.57□□□□□ -0.88
LDB3-201ENST00000263066 ACTN3Q08043 901 aaPredicted RBP9.57□□□□□ -0.88
LDB3-201ENST00000263066 TEX11Q8IYF3 940 aa9.57□□□□□ -0.88
LDB3-201ENST00000263066 GJD4Q96KN9 370 aaPredicted RBP9.57□□□□□ -0.88
LDB3-201ENST00000263066 PUS7Q96PZ0 661 aaKnown RBP9.57□□□□□ -0.88
LDB3-201ENST00000263066 GBP3Q9H0R5 595 aa9.57□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms