RNA–Protein interactions for RNA: ENST00000262554.6

SPTLC1-201, Transcript of serine palmitoyltransferase long chain base subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SPTLC1, Length 1,894 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPTLC1-201ENST00000262554 ATRNO75882 1429 aa15.3■□□□□ 0.04
SPTLC1-201ENST00000262554 A0A0G2JLW4 131 aa15.29■□□□□ 0.04
SPTLC1-201ENST00000262554 GPAA1O43292 621 aa15.29■□□□□ 0.04
SPTLC1-201ENST00000262554 PFKFB2O60825 505 aa15.29■□□□□ 0.04
SPTLC1-201ENST00000262554 PHF14O94880 888 aa15.29■□□□□ 0.04
SPTLC1-201ENST00000262554 UBE2HP62256 183 aa15.29■□□□□ 0.04
SPTLC1-201ENST00000262554 UBE3CQ15386 1083 aa15.29■□□□□ 0.04
SPTLC1-201ENST00000262554 TTLL5Q6EMB2 1281 aa15.29■□□□□ 0.04
SPTLC1-201ENST00000262554 ANP32BQ92688 251 aaKnown RBP15.29■□□□□ 0.04
SPTLC1-201ENST00000262554 LLPHQ9BRT6 129 aaKnown RBP15.29■□□□□ 0.04
SPTLC1-201ENST00000262554 AGXT2Q9BYV1 514 aa15.29■□□□□ 0.04
SPTLC1-201ENST00000262554 PIH1D3Q9NQM4 214 aaKnown RBP15.29■□□□□ 0.04
SPTLC1-201ENST00000262554 SYCE3A1L190 88 aa15.29■□□□□ 0.04
SPTLC1-201ENST00000262554 FIBPO43427 364 aa15.29■□□□□ 0.04
SPTLC1-201ENST00000262554 IDH1O75874 414 aaKnown RBP15.29■□□□□ 0.04
SPTLC1-201ENST00000262554 DNM1Q05193 864 aaKnown RBP15.29■□□□□ 0.04
SPTLC1-201ENST00000262554 CDC37L1Q7L3B6 337 aa15.29■□□□□ 0.04
SPTLC1-201ENST00000262554 FNBP4Q8N3X1 1017 aaPredicted RBP15.29■□□□□ 0.04
SPTLC1-201ENST00000262554 CHMP4CQ96CF2 233 aa15.29■□□□□ 0.04
SPTLC1-201ENST00000262554 CNTNAP4Q9C0A0 1308 aa15.29■□□□□ 0.04
SPTLC1-201ENST00000262554 FOXP2O15409 715 aa15.28■□□□□ 0.04
SPTLC1-201ENST00000262554 FGAP02671 866 aa15.28■□□□□ 0.04
SPTLC1-201ENST00000262554 DOCK2Q92608 1830 aa15.28■□□□□ 0.04
SPTLC1-201ENST00000262554 SCN7AQ01118 1682 aa15.27■□□□□ 0.04
SPTLC1-201ENST00000262554 BTAF1O14981 1849 aa15.27■□□□□ 0.04
SPTLC1-201ENST00000262554 RGL2O15211 777 aa15.27■□□□□ 0.04
SPTLC1-201ENST00000262554 KRT85P78386 507 aa15.27■□□□□ 0.04
SPTLC1-201ENST00000262554 APOBRQ0VD83 1088 aa15.27■□□□□ 0.04
SPTLC1-201ENST00000262554 SCRN1Q12765 414 aa15.27■□□□□ 0.04
SPTLC1-201ENST00000262554 FBXL16Q8N461 479 aa15.27■□□□□ 0.04
SPTLC1-201ENST00000262554 SPATA5Q8NB90 893 aa15.27■□□□□ 0.04
SPTLC1-201ENST00000262554 CDC5LQ99459 802 aaKnown RBP15.27■□□□□ 0.04
SPTLC1-201ENST00000262554 CASZ1Q86V15 1759 aa15.27■□□□□ 0.03
SPTLC1-201ENST00000262554 ZNF213O14771 459 aa15.27■□□□□ 0.03
SPTLC1-201ENST00000262554 JAK2O60674 1132 aa15.27■□□□□ 0.03
SPTLC1-201ENST00000262554 PDE6AP16499 860 aa15.27■□□□□ 0.03
SPTLC1-201ENST00000262554 HAND2P61296 217 aa15.27■□□□□ 0.03
SPTLC1-201ENST00000262554 FAM43AQ8N2R8 423 aa15.27■□□□□ 0.03
SPTLC1-201ENST00000262554 FAM184AQ8NB25 1140 aa15.27■□□□□ 0.03
SPTLC1-201ENST00000262554 ZNF274Q96GC6 653 aaPredicted RBP15.27■□□□□ 0.03
SPTLC1-201ENST00000262554 USP21Q9UK80 565 aa15.27■□□□□ 0.03
SPTLC1-201ENST00000262554 KIF3AQ9Y496 699 aa15.27■□□□□ 0.03
SPTLC1-201ENST00000262554 HMGN5P82970 282 aaKnown RBP15.26■□□□□ 0.03
SPTLC1-201ENST00000262554 SPATA31A6Q5VVP1 1343 aa15.26■□□□□ 0.03
SPTLC1-201ENST00000262554 NHSQ6T4R5 1651 aa15.26■□□□□ 0.03
SPTLC1-201ENST00000262554 SMARCC2Q8TAQ2 1214 aa15.26■□□□□ 0.03
SPTLC1-201ENST00000262554 ZNF532Q9HCE3 1301 aa15.26■□□□□ 0.03
SPTLC1-201ENST00000262554 THSD7AQ9UPZ6 1657 aa15.26■□□□□ 0.03
SPTLC1-201ENST00000262554 MCM5P33992 734 aa15.25■□□□□ 0.03
SPTLC1-201ENST00000262554 CCDC173Q0VFZ6 552 aa15.25■□□□□ 0.03
SPTLC1-201ENST00000262554 MAP3K12Q12852 859 aa15.25■□□□□ 0.03
SPTLC1-201ENST00000262554 CCDC183Q5T5S1 534 aa15.25■□□□□ 0.03
SPTLC1-201ENST00000262554 RC3H1Q5TC82 1133 aaKnown RBP15.25■□□□□ 0.03
SPTLC1-201ENST00000262554 FERMT3Q86UX7 667 aa15.25■□□□□ 0.03
SPTLC1-201ENST00000262554 NCOA7Q8NI08 942 aa15.25■□□□□ 0.03
SPTLC1-201ENST00000262554 RBSNQ9H1K0 784 aa15.25■□□□□ 0.03
SPTLC1-201ENST00000262554 H3BQV1 296 aa15.25■□□□□ 0.03
SPTLC1-201ENST00000262554 KCNQ4P56696 695 aa15.25■□□□□ 0.03
SPTLC1-201ENST00000262554 CHRNDQ07001 517 aa15.25■□□□□ 0.03
SPTLC1-201ENST00000262554 RASGRF1Q13972 1273 aa15.25■□□□□ 0.03
SPTLC1-201ENST00000262554 ERFEQ4G0M1 354 aa15.25■□□□□ 0.03
SPTLC1-201ENST00000262554 IFFO2Q5TF58 517 aa15.25■□□□□ 0.03
SPTLC1-201ENST00000262554 CHST3Q7LGC8 479 aa15.25■□□□□ 0.03
SPTLC1-201ENST00000262554 RALYLQ86SE5 291 aaKnown RBP15.25■□□□□ 0.03
SPTLC1-201ENST00000262554 DDX11Q96FC9 970 aa15.25■□□□□ 0.03
SPTLC1-201ENST00000262554 WWC3Q9ULE0 1092 aa15.25■□□□□ 0.03
SPTLC1-201ENST00000262554 NAP1L2Q9ULW6 460 aaPredicted RBP15.25■□□□□ 0.03
SPTLC1-201ENST00000262554 WDR19Q8NEZ3 1342 aa15.24■□□□□ 0.03
SPTLC1-201ENST00000262554 TCRBV5S4A2TA0A5A2 114 aa15.24■□□□□ 0.03
SPTLC1-201ENST00000262554 LETM1O95202 739 aaPredicted RBP15.24■□□□□ 0.03
SPTLC1-201ENST00000262554 SF3B3Q15393 1217 aaKnown RBP15.24■□□□□ 0.03
SPTLC1-201ENST00000262554 ANKRD18AQ8IVF6 992 aa15.24■□□□□ 0.03
SPTLC1-201ENST00000262554 NSUN7Q8NE18 718 aaKnown RBP15.24■□□□□ 0.03
SPTLC1-201ENST00000262554 AIDAQ96BJ3 306 aa15.24■□□□□ 0.03
SPTLC1-201ENST00000262554 TSPY26PQ9H489 355 aa15.24■□□□□ 0.03
SPTLC1-201ENST00000262554 A0A1B0GUL6 1792 aa15.23■□□□□ 0.03
SPTLC1-201ENST00000262554 ELP1O95163 1332 aa15.23■□□□□ 0.03
SPTLC1-201ENST00000262554 SNAP23O00161 211 aa15.23■□□□□ 0.03
SPTLC1-201ENST00000262554 PRC1O43663 620 aa15.23■□□□□ 0.03
SPTLC1-201ENST00000262554 APPP05067 770 aa15.23■□□□□ 0.03
SPTLC1-201ENST00000262554 GTF2E1P29083 439 aaPredicted RBP15.23■□□□□ 0.03
SPTLC1-201ENST00000262554 PDIA3P30101 505 aaKnown RBP15.23■□□□□ 0.03
SPTLC1-201ENST00000262554 EVCP57679 992 aa15.23■□□□□ 0.03
SPTLC1-201ENST00000262554 MB21D2Q8IYB1 491 aaPredicted RBP15.23■□□□□ 0.03
SPTLC1-201ENST00000262554 SCAND2PQ9GZW5 306 aaPredicted RBP15.23■□□□□ 0.03
SPTLC1-201ENST00000262554 PTPDC1A2A3K4 754 aa15.23■□□□□ 0.03
SPTLC1-201ENST00000262554 RPS6KA4O75676 772 aa15.23■□□□□ 0.03
SPTLC1-201ENST00000262554 CCT2P78371 535 aaKnown RBP15.23■□□□□ 0.03
SPTLC1-201ENST00000262554 TRDNQ13061 729 aa15.23■□□□□ 0.03
SPTLC1-201ENST00000262554 TRIM44Q96DX7 344 aaPredicted RBP15.23■□□□□ 0.03
SPTLC1-201ENST00000262554 NYXQ9GZU5 481 aa15.23■□□□□ 0.03
SPTLC1-201ENST00000262554 ZSCAN16Q9H4T2 348 aaPredicted RBP15.23■□□□□ 0.03
SPTLC1-201ENST00000262554 NARFQ9UHQ1 456 aa15.23■□□□□ 0.03
SPTLC1-201ENST00000262554 MYH15Q9Y2K3 1946 aa15.22■□□□□ 0.03
SPTLC1-201ENST00000262554 BCAMP50895 628 aa15.22■□□□□ 0.03
SPTLC1-201ENST00000262554 TPRNQ4KMQ1 711 aa15.22■□□□□ 0.03
SPTLC1-201ENST00000262554 NAA16Q6N069 864 aaPredicted RBP15.22■□□□□ 0.03
SPTLC1-201ENST00000262554 BICDL1Q6ZP65 573 aa15.22■□□□□ 0.03
SPTLC1-201ENST00000262554 PTF1AQ7RTS3 328 aa15.22■□□□□ 0.03
SPTLC1-201ENST00000262554 MAGEB6Q8N7X4 407 aa15.22■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 79.3 ms