RNA–Protein interactions for RNA: ENST00000261058.2

CCDC54-201, Transcript of coiled-coil domain containing 54, humanhuman

APPRIS P1 BASIC

Gene CCDC54, Length 1,444 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC54-201ENST00000261058 MAP3K10Q02779 954 aa7.44□□□□□ -1.22
CCDC54-201ENST00000261058 TAF1CQ15572 869 aaPredicted RBP7.44□□□□□ -1.22
CCDC54-201ENST00000261058 ZNF417Q8TAU3 575 aa7.44□□□□□ -1.22
CCDC54-201ENST00000261058 NUDT8Q8WV74 236 aa7.44□□□□□ -1.22
CCDC54-201ENST00000261058 ZNF587Q96SQ5 575 aaPredicted RBP7.44□□□□□ -1.22
CCDC54-201ENST00000261058 JPH1Q9HDC5 661 aaPredicted RBP7.44□□□□□ -1.22
CCDC54-201ENST00000261058 NID1P14543 1247 aa7.43□□□□□ -1.22
CCDC54-201ENST00000261058 DTHD1Q6ZMT9 781 aa7.43□□□□□ -1.22
CCDC54-201ENST00000261058 METTL16Q86W50 562 aaKnown RBP7.43□□□□□ -1.22
CCDC54-201ENST00000261058 TMEM87AQ8NBN3 555 aa7.43□□□□□ -1.22
CCDC54-201ENST00000261058 CLEC4MQ9H2X3 399 aaPredicted RBP7.43□□□□□ -1.22
CCDC54-201ENST00000261058 B3GALT4O96024 378 aa7.42□□□□□ -1.22
CCDC54-201ENST00000261058 EPHA1P21709 976 aa7.42□□□□□ -1.22
CCDC54-201ENST00000261058 FAAP100Q0VG06 881 aa7.42□□□□□ -1.22
CCDC54-201ENST00000261058 C8orf86Q6ZUL3 223 aa7.42□□□□□ -1.22
CCDC54-201ENST00000261058 ASAP3Q8TDY4 903 aa7.42□□□□□ -1.22
CCDC54-201ENST00000261058 NOC4LQ9BVI4 516 aaKnown RBP7.42□□□□□ -1.22
CCDC54-201ENST00000261058 TM4SF5O14894 197 aa7.41□□□□□ -1.22
CCDC54-201ENST00000261058 CDC27P30260 824 aa7.41□□□□□ -1.22
CCDC54-201ENST00000261058 HDLBPQ00341 1268 aaKnown RBP7.41□□□□□ -1.22
CCDC54-201ENST00000261058 KCNMA1Q12791 1236 aa7.41□□□□□ -1.22
CCDC54-201ENST00000261058 LACRTQ9GZZ8 138 aa7.41□□□□□ -1.22
CCDC54-201ENST00000261058 ESRRAP11474 423 aaPredicted RBP7.4□□□□□ -1.22
CCDC54-201ENST00000261058 ZNF423Q2M1K9 1284 aa7.4□□□□□ -1.22
CCDC54-201ENST00000261058 MSL1Q68DK7 614 aa7.4□□□□□ -1.22
CCDC54-201ENST00000261058 GDF6Q6KF10 455 aaPredicted RBP7.4□□□□□ -1.22
CCDC54-201ENST00000261058 ERMP1Q7Z2K6 904 aa7.4□□□□□ -1.22
CCDC54-201ENST00000261058 NECAB3Q96P71 396 aaPredicted RBP7.4□□□□□ -1.22
CCDC54-201ENST00000261058 SOX17Q9H6I2 414 aaPredicted RBP7.4□□□□□ -1.22
CCDC54-201ENST00000261058 SEC31BQ9NQW1 1179 aa7.4□□□□□ -1.22
CCDC54-201ENST00000261058 SH2B1Q9NRF2 756 aaPredicted RBP7.4□□□□□ -1.22
CCDC54-201ENST00000261058 H3BRJ5 948 aa7.39□□□□□ -1.23
CCDC54-201ENST00000261058 ENC1O14682 589 aa7.39□□□□□ -1.23
CCDC54-201ENST00000261058 ZNF76P36508 570 aa7.39□□□□□ -1.23
CCDC54-201ENST00000261058 PCDH1Q08174 1060 aa7.39□□□□□ -1.23
CCDC54-201ENST00000261058 LINC00114Q6XXX2 140 aa7.39□□□□□ -1.23
CCDC54-201ENST00000261058 SV2BQ7L1I2 683 aa7.39□□□□□ -1.23
CCDC54-201ENST00000261058 SVOPQ8N4V2 548 aa7.39□□□□□ -1.23
CCDC54-201ENST00000261058 IL22RA1Q8N6P7 574 aa7.39□□□□□ -1.23
CCDC54-201ENST00000261058 WNT8BQ93098 351 aa7.39□□□□□ -1.23
CCDC54-201ENST00000261058 ENAMQ9NRM1 1142 aa7.39□□□□□ -1.23
CCDC54-201ENST00000261058 AKAP2Q9Y2D5 859 aa7.39□□□□□ -1.23
CCDC54-201ENST00000261058 PPME1Q9Y570 386 aa7.39□□□□□ -1.23
CCDC54-201ENST00000261058 RNF225M0QZC1 329 aaPredicted RBP7.38□□□□□ -1.23
CCDC54-201ENST00000261058 RAD51AP2Q09MP3 1159 aa7.38□□□□□ -1.23
CCDC54-201ENST00000261058 RNF34Q969K3 372 aa7.38□□□□□ -1.23
CCDC54-201ENST00000261058 CEP44Q9C0F1 390 aa7.38□□□□□ -1.23
CCDC54-201ENST00000261058 TTF2Q9UNY4 1162 aaKnown RBP7.38□□□□□ -1.23
CCDC54-201ENST00000261058 SOX1O00570 391 aaPredicted RBP7.37□□□□□ -1.23
CCDC54-201ENST00000261058 AMPD1P23109 780 aa7.37□□□□□ -1.23
CCDC54-201ENST00000261058 NRSN2Q9GZP1 204 aa7.37□□□□□ -1.23
CCDC54-201ENST00000261058 FBXO24O75426 580 aa7.36□□□□□ -1.23
CCDC54-201ENST00000261058 SNRPNP63162 240 aaKnown RBP7.36□□□□□ -1.23
CCDC54-201ENST00000261058 PIP4K2BP78356 416 aa7.36□□□□□ -1.23
CCDC54-201ENST00000261058 IKBKEQ14164 716 aa7.36□□□□□ -1.23
CCDC54-201ENST00000261058 WFDC8Q8IUA0 241 aa7.36□□□□□ -1.23
CCDC54-201ENST00000261058 TRIM11Q96F44 468 aa7.36□□□□□ -1.23
CCDC54-201ENST00000261058 RSRP1Q9BUV0 290 aa7.36□□□□□ -1.23
CCDC54-201ENST00000261058 SRA1Q9HD15 236 aaKnown RBP7.36□□□□□ -1.23
CCDC54-201ENST00000261058 TMEM39AQ9NV64 488 aa7.36□□□□□ -1.23
CCDC54-201ENST00000261058 CELA3AP09093 270 aa7.35□□□□□ -1.23
CCDC54-201ENST00000261058 CABP4P57796 275 aa7.35□□□□□ -1.23
CCDC54-201ENST00000261058 SETDB1Q15047 1291 aa7.35□□□□□ -1.23
CCDC54-201ENST00000261058 CCDC85BQ15834 202 aaPredicted RBP7.35□□□□□ -1.23
CCDC54-201ENST00000261058 TPTE2Q6XPS3 522 aa7.35□□□□□ -1.23
CCDC54-201ENST00000261058 HS2ST1Q7LGA3 356 aa7.35□□□□□ -1.23
CCDC54-201ENST00000261058 MAP4K3Q8IVH8 894 aa7.35□□□□□ -1.23
CCDC54-201ENST00000261058 DTWD1Q8N5C7 304 aa7.35□□□□□ -1.23
CCDC54-201ENST00000261058 NEDD1Q8NHV4 660 aa7.35□□□□□ -1.23
CCDC54-201ENST00000261058 OSGEPQ9NPF4 335 aa7.35□□□□□ -1.23
CCDC54-201ENST00000261058 PAGE1O75459 146 aa7.35□□□□□ -1.23
CCDC54-201ENST00000261058 NT5DC4Q86YG4 428 aa7.35□□□□□ -1.23
CCDC54-201ENST00000261058 TRIM56Q9BRZ2 755 aaKnown RBP7.35□□□□□ -1.23
CCDC54-201ENST00000261058 FAM177BA6PVY3 158 aa7.34□□□□□ -1.23
CCDC54-201ENST00000261058 LINC01387J3KSC0 135 aa7.34□□□□□ -1.23
CCDC54-201ENST00000261058 FSCN2O14926 492 aa7.34□□□□□ -1.23
CCDC54-201ENST00000261058 EIF4EBP3O60516 100 aaPredicted RBP7.34□□□□□ -1.23
CCDC54-201ENST00000261058 DEAF1O75398 565 aaPredicted RBP7.34□□□□□ -1.23
CCDC54-201ENST00000261058 RLBP1P12271 317 aa7.34□□□□□ -1.23
CCDC54-201ENST00000261058 RANGAP1P46060 587 aaPredicted RBP7.34□□□□□ -1.23
CCDC54-201ENST00000261058 HGSNATQ68CP4 663 aa7.34□□□□□ -1.23
CCDC54-201ENST00000261058 GNB5O14775 395 aa7.33□□□□□ -1.24
CCDC54-201ENST00000261058 BMP6P22004 513 aa7.33□□□□□ -1.24
CCDC54-201ENST00000261058 RPS26P62854 115 aaKnown RBP7.33□□□□□ -1.24
CCDC54-201ENST00000261058 PPP2R3AQ06190 1150 aa7.33□□□□□ -1.24
CCDC54-201ENST00000261058 TXNDC11Q6PKC3 985 aa7.33□□□□□ -1.24
CCDC54-201ENST00000261058 DMRTC2Q8IXT2 367 aaPredicted RBP7.33□□□□□ -1.24
CCDC54-201ENST00000261058 TMEM151AQ8N4L1 468 aa7.33□□□□□ -1.24
CCDC54-201ENST00000261058 KLHL23Q8NBE8 558 aa7.33□□□□□ -1.24
CCDC54-201ENST00000261058 GALNT11Q8NCW6 608 aa7.33□□□□□ -1.24
CCDC54-201ENST00000261058 RHOVQ96L33 236 aa7.33□□□□□ -1.24
CCDC54-201ENST00000261058 TGIF2Q9GZN2 237 aa7.33□□□□□ -1.24
CCDC54-201ENST00000261058 KCNQ5Q9NR82 932 aa7.33□□□□□ -1.24
CCDC54-201ENST00000261058 GPN3Q9UHW5 284 aaPredicted RBP7.33□□□□□ -1.24
CCDC54-201ENST00000261058 GGT7Q9UJ14 662 aa7.33□□□□□ -1.24
CCDC54-201ENST00000261058 DDX41Q9UJV9 622 aaKnown RBP7.33□□□□□ -1.24
CCDC54-201ENST00000261058 NME2P22392 152 aa7.32□□□□□ -1.24
CCDC54-201ENST00000261058 GSK3AP49840 483 aa7.32□□□□□ -1.24
CCDC54-201ENST00000261058 LIG3P49916 1009 aa7.32□□□□□ -1.24
CCDC54-201ENST00000261058 RACK1P63244 317 aaKnown RBP7.32□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 10.9 ms