RNA–Protein interactions for RNA: ENST00000641009.1

LINC00339-211, long intergenic non-protein coding RNA 339, humanhuman

Gene LINC00339, Length 1,450 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-211ENST00000641009 ZP1P60852 638 aa11.16□□□□□ -0.62
LINC00339-211ENST00000641009 IL18R1Q13478 541 aa11.16□□□□□ -0.62
LINC00339-211ENST00000641009 ATXN7L3Q14CW9 347 aaPredicted RBP11.16□□□□□ -0.62
LINC00339-211ENST00000641009 CDK5R1Q15078 307 aa11.16□□□□□ -0.62
LINC00339-211ENST00000641009 KRBOX4Q5JUW0 171 aa11.16□□□□□ -0.62
LINC00339-211ENST00000641009 SAMD5Q5TGI4 173 aa11.16□□□□□ -0.62
LINC00339-211ENST00000641009 LPCAT4Q643R3 524 aa11.16□□□□□ -0.62
LINC00339-211ENST00000641009 OR52W1Q6IF63 320 aa11.16□□□□□ -0.62
LINC00339-211ENST00000641009 SERPINA12Q8IW75 414 aa11.16□□□□□ -0.62
LINC00339-211ENST00000641009 OR5AK2Q8NH90 309 aa11.16□□□□□ -0.62
LINC00339-211ENST00000641009 RHOXF1Q8NHV9 184 aa11.16□□□□□ -0.62
LINC00339-211ENST00000641009 CORO2AQ92828 525 aa11.16□□□□□ -0.62
LINC00339-211ENST00000641009 C9orf16Q9BUW7 83 aa11.16□□□□□ -0.62
LINC00339-211ENST00000641009 MMP28Q9H239 520 aa11.16□□□□□ -0.62
LINC00339-211ENST00000641009 RHOFQ9HBH0 211 aa11.16□□□□□ -0.62
LINC00339-211ENST00000641009 ZNF286AQ9HBT8 521 aa11.16□□□□□ -0.62
LINC00339-211ENST00000641009 TAS2R3Q9NYW6 316 aa11.16□□□□□ -0.62
LINC00339-211ENST00000641009 DPM3Q9P2X0 92 aa11.16□□□□□ -0.62
LINC00339-211ENST00000641009 FUOMA2VDF0 154 aa11.15□□□□□ -0.62
LINC00339-211ENST00000641009 TMEM212A6NML5 194 aa11.15□□□□□ -0.62
LINC00339-211ENST00000641009 ADARB2-AS1A8MUL3 147 aa11.15□□□□□ -0.62
LINC00339-211ENST00000641009 HSPB6O14558 160 aa11.15□□□□□ -0.62
LINC00339-211ENST00000641009 IGLV1-47P01700 117 aa11.15□□□□□ -0.62
LINC00339-211ENST00000641009 PRB2P02812 416 aaPredicted RBP11.15□□□□□ -0.62
LINC00339-211ENST00000641009 CSN2P05814 226 aa11.15□□□□□ -0.62
LINC00339-211ENST00000641009 PTGFRP43088 359 aa11.15□□□□□ -0.62
LINC00339-211ENST00000641009 VDAC2P45880 294 aaPredicted RBP11.15□□□□□ -0.62
LINC00339-211ENST00000641009 BDH1Q02338 343 aa11.15□□□□□ -0.62
LINC00339-211ENST00000641009 FBLN7Q53RD9 439 aa11.15□□□□□ -0.62
LINC00339-211ENST00000641009 UTF1Q5T230 341 aa11.15□□□□□ -0.62
LINC00339-211ENST00000641009 CCDC121Q6ZUS5 278 aa11.15□□□□□ -0.62
LINC00339-211ENST00000641009 RTN4RL2Q86UN3 420 aa11.15□□□□□ -0.62
LINC00339-211ENST00000641009 PARP16Q8N5Y8 322 aa11.15□□□□□ -0.62
LINC00339-211ENST00000641009 CHST4Q8NCG5 386 aa11.15□□□□□ -0.62
LINC00339-211ENST00000641009 OR52I1Q8NGK6 324 aa11.15□□□□□ -0.62
LINC00339-211ENST00000641009 OR5D14Q8NGL3 314 aa11.15□□□□□ -0.62
LINC00339-211ENST00000641009 TSEN15Q8WW01 171 aaKnown RBP11.15□□□□□ -0.62
LINC00339-211ENST00000641009 Q96MT0 163 aa11.15□□□□□ -0.62
LINC00339-211ENST00000641009 NR1H4Q96RI1 486 aaPredicted RBP11.15□□□□□ -0.62
LINC00339-211ENST00000641009 MYCBPQ99417 103 aaPredicted RBP11.15□□□□□ -0.62
LINC00339-211ENST00000641009 PPIL3Q9H2H8 161 aaKnown RBP11.15□□□□□ -0.62
LINC00339-211ENST00000641009 DHDHQ9UQ10 334 aa11.15□□□□□ -0.62
LINC00339-211ENST00000641009 LOC100130705A0A1B0GUX0 176 aa11.14□□□□□ -0.63
LINC00339-211ENST00000641009 DEGS1O15121 323 aa11.14□□□□□ -0.63
LINC00339-211ENST00000641009 MPZL2O60487 215 aa11.14□□□□□ -0.63
LINC00339-211ENST00000641009 ALX3O95076 343 aa11.14□□□□□ -0.63
LINC00339-211ENST00000641009 GTF2A1P52655 376 aaPredicted RBP11.14□□□□□ -0.63
LINC00339-211ENST00000641009 EMX1Q04741 257 aaPredicted RBP11.14□□□□□ -0.63
LINC00339-211ENST00000641009 RAB40BQ12829 278 aa11.14□□□□□ -0.63
LINC00339-211ENST00000641009 ZNF691Q5VV52 312 aa11.14□□□□□ -0.63
LINC00339-211ENST00000641009 NDUFA11Q86Y39 141 aa11.14□□□□□ -0.63
LINC00339-211ENST00000641009 OR4D6Q8NGJ1 314 aa11.14□□□□□ -0.63
LINC00339-211ENST00000641009 ZNF596Q8TC21 504 aa11.14□□□□□ -0.63
LINC00339-211ENST00000641009 APH1BQ8WW43 257 aa11.14□□□□□ -0.63
LINC00339-211ENST00000641009 R3HDM4Q96D70 268 aa11.14□□□□□ -0.63
LINC00339-211ENST00000641009 OCSTAMPQ9BR26 566 aa11.14□□□□□ -0.63
LINC00339-211ENST00000641009 INPP5EQ9NRR6 644 aa11.14□□□□□ -0.63
LINC00339-211ENST00000641009 H0YJX3 145 aa11.13□□□□□ -0.63
LINC00339-211ENST00000641009 CCDC159P0C7I6 412 aa11.13□□□□□ -0.63
LINC00339-211ENST00000641009 NFYBP25208 207 aa11.13□□□□□ -0.63
LINC00339-211ENST00000641009 CD34P28906 385 aa11.13□□□□□ -0.63
LINC00339-211ENST00000641009 SOX2P48431 317 aa11.13□□□□□ -0.63
LINC00339-211ENST00000641009 MTNR1BP49286 362 aa11.13□□□□□ -0.63
LINC00339-211ENST00000641009 GBX2P52951 348 aaPredicted RBP11.13□□□□□ -0.63
LINC00339-211ENST00000641009 ZSCAN26Q16670 478 aa11.13□□□□□ -0.63
LINC00339-211ENST00000641009 C17orf58Q2M2W7 97 aa11.13□□□□□ -0.63
LINC00339-211ENST00000641009 OXLD1Q5BKU9 147 aa11.13□□□□□ -0.63
LINC00339-211ENST00000641009 KPRPQ5T749 579 aaPredicted RBP11.13□□□□□ -0.63
LINC00339-211ENST00000641009 SATL1Q86VE3 508 aa11.13□□□□□ -0.63
LINC00339-211ENST00000641009 OR51A2Q8NGJ7 313 aa11.13□□□□□ -0.63
LINC00339-211ENST00000641009 RGP1Q92546 391 aaPredicted RBP11.13□□□□□ -0.63
LINC00339-211ENST00000641009 STMN2Q93045 179 aa11.13□□□□□ -0.63
LINC00339-211ENST00000641009 S100A14Q9HCY8 104 aa11.13□□□□□ -0.63
LINC00339-211ENST00000641009 MRPS18AQ9NVS2 196 aaKnown RBP11.13□□□□□ -0.63
LINC00339-211ENST00000641009 FAM118AQ9NWS6 357 aa11.13□□□□□ -0.63
LINC00339-211ENST00000641009 A0A1W2PRX2 142 aa11.12□□□□□ -0.63
LINC00339-211ENST00000641009 ZNF729A6NN14 1252 aaPredicted RBP11.12□□□□□ -0.63
LINC00339-211ENST00000641009 LEUTXA8MZ59 168 aa11.12□□□□□ -0.63
LINC00339-211ENST00000641009 BUB1B-PAK6H3BSN5 160 aa11.12□□□□□ -0.63
LINC00339-211ENST00000641009 H3BUI4 141 aa11.12□□□□□ -0.63
LINC00339-211ENST00000641009 GABRPO00591 440 aa11.12□□□□□ -0.63
LINC00339-211ENST00000641009 TOR1AO14656 332 aa11.12□□□□□ -0.63
LINC00339-211ENST00000641009 ALDOBP05062 364 aa11.12□□□□□ -0.63
LINC00339-211ENST00000641009 LIMS3P0CW19 117 aa11.12□□□□□ -0.63
LINC00339-211ENST00000641009 LIMS4P0CW20 117 aa11.12□□□□□ -0.63
LINC00339-211ENST00000641009 BRS3P32247 399 aa11.12□□□□□ -0.63
LINC00339-211ENST00000641009 MRPL28Q13084 256 aaKnown RBP11.12□□□□□ -0.63
LINC00339-211ENST00000641009 RBM39Q14498 530 aaKnown RBP11.12□□□□□ -0.63
LINC00339-211ENST00000641009 SMN1Q16637 294 aaKnown RBP11.12□□□□□ -0.63
LINC00339-211ENST00000641009 HLA-DRB5Q30154 266 aa11.12□□□□□ -0.63
LINC00339-211ENST00000641009 TPTE2P1Q5T6R2 138 aa11.12□□□□□ -0.63
LINC00339-211ENST00000641009 XAF1Q6GPH4 301 aa11.12□□□□□ -0.63
LINC00339-211ENST00000641009 C16orf82Q7Z2V1 217 aa11.12□□□□□ -0.63
LINC00339-211ENST00000641009 PQLC1Q8N2U9 271 aa11.12□□□□□ -0.63
LINC00339-211ENST00000641009 OR5AU1Q8NGC0 362 aa11.12□□□□□ -0.63
LINC00339-211ENST00000641009 OR51T1Q8NGJ9 327 aa11.12□□□□□ -0.63
LINC00339-211ENST00000641009 OR10K1Q8NGX5 313 aa11.12□□□□□ -0.63
LINC00339-211ENST00000641009 GPER1Q99527 375 aa11.12□□□□□ -0.63
LINC00339-211ENST00000641009 SLC25A33Q9BSK2 321 aa11.12□□□□□ -0.63
LINC00339-211ENST00000641009 FAM192AQ9GZU8 254 aa11.12□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms