RNA–Protein interactions for RNA: ENST00000637050.1

CLN3-254, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-254ENST00000637050 ZNF735P0CB33 412 aa15.48■□□□□ 0.07
CLN3-254ENST00000637050 HRH1P35367 487 aa15.48■□□□□ 0.07
CLN3-254ENST00000637050 SNRPD2P62316 118 aaKnown RBP15.48■□□□□ 0.07
CLN3-254ENST00000637050 MICBQ29980 383 aa15.48■□□□□ 0.07
CLN3-254ENST00000637050 ACTBL2Q562R1 376 aa15.48■□□□□ 0.07
CLN3-254ENST00000637050 RNASE10Q5GAN6 216 aaKnown RBP15.48■□□□□ 0.07
CLN3-254ENST00000637050 SHEQ5VZ18 495 aa15.48■□□□□ 0.07
CLN3-254ENST00000637050 BPIFB2Q8N4F0 458 aa15.48■□□□□ 0.07
CLN3-254ENST00000637050 NEK7Q8TDX7 302 aa15.48■□□□□ 0.07
CLN3-254ENST00000637050 UPRTQ96BW1 309 aa15.48■□□□□ 0.07
CLN3-254ENST00000637050 SAP30LQ9HAJ7 183 aa15.48■□□□□ 0.07
CLN3-254ENST00000637050 OR14J1Q9UGF5 321 aa15.48■□□□□ 0.07
CLN3-254ENST00000637050 ICE1Q9Y2F5 2266 aa15.48■□□□□ 0.07
CLN3-254ENST00000637050 FAM221AA4D161 298 aa15.48■□□□□ 0.07
CLN3-254ENST00000637050 RFPL4AA6NLU0 287 aa15.48■□□□□ 0.07
CLN3-254ENST00000637050 RFPL4AL1F8VTS6 287 aa15.48■□□□□ 0.07
CLN3-254ENST00000637050 IFNL4K9M1U5 179 aa15.48■□□□□ 0.07
CLN3-254ENST00000637050 AMY2BP19961 511 aa15.48■□□□□ 0.07
CLN3-254ENST00000637050 ZNF782Q6ZMW2 699 aaPredicted RBP15.48■□□□□ 0.07
CLN3-254ENST00000637050 MEX3BQ6ZN04 569 aaKnown RBP15.48■□□□□ 0.07
CLN3-254ENST00000637050 Q6ZPA2 131 aa15.48■□□□□ 0.07
CLN3-254ENST00000637050 OR51S1Q8NGJ8 323 aa15.48■□□□□ 0.07
CLN3-254ENST00000637050 MAFIPQ8WZ33 124 aa15.48■□□□□ 0.07
CLN3-254ENST00000637050 CREB3L1Q96BA8 519 aa15.48■□□□□ 0.07
CLN3-254ENST00000637050 WIPI2Q9Y4P8 454 aa15.48■□□□□ 0.07
CLN3-254ENST00000637050 NUBP2Q9Y5Y2 271 aa15.48■□□□□ 0.07
CLN3-254ENST00000637050 IGKV1D-8A0A087WSZ0 117 aa15.47■□□□□ 0.07
CLN3-254ENST00000637050 A0A1W2PPR1 153 aa15.47■□□□□ 0.07
CLN3-254ENST00000637050 A6NNC1 897 aa15.47■□□□□ 0.07
CLN3-254ENST00000637050 AMY2AP04746 511 aa15.47■□□□□ 0.07
CLN3-254ENST00000637050 PSG2P11465 335 aa15.47■□□□□ 0.07
CLN3-254ENST00000637050 CEBPDP49716 269 aaPredicted RBP15.47■□□□□ 0.07
CLN3-254ENST00000637050 PPOXP50336 477 aa15.47■□□□□ 0.07
CLN3-254ENST00000637050 TAS2R46P59540 309 aa15.47■□□□□ 0.07
CLN3-254ENST00000637050 SRSF1Q07955 248 aaKnown RBP eCLIP15.47■□□□□ 0.07
CLN3-254ENST00000637050 PAN3Q58A45 887 aaKnown RBP15.47■□□□□ 0.07
CLN3-254ENST00000637050 VAX1Q5SQQ9 334 aa15.47■□□□□ 0.07
CLN3-254ENST00000637050 BTN2A1Q7KYR7 527 aa15.47■□□□□ 0.07
CLN3-254ENST00000637050 BOLLQ8N9W6 283 aaKnown RBP15.47■□□□□ 0.07
CLN3-254ENST00000637050 HPS1Q92902 700 aa15.47■□□□□ 0.07
CLN3-254ENST00000637050 SLC6A7Q99884 636 aa15.47■□□□□ 0.07
CLN3-254ENST00000637050 RIMS4Q9H426 269 aaPredicted RBP15.47■□□□□ 0.07
CLN3-254ENST00000637050 CBLN4Q9NTU7 201 aa15.47■□□□□ 0.07
CLN3-254ENST00000637050 TREM2Q9NZC2 230 aa15.47■□□□□ 0.07
CLN3-254ENST00000637050 FBXO9Q9UK97 447 aaPredicted RBP15.47■□□□□ 0.07
CLN3-254ENST00000637050 OR2AT4A6NND4 320 aa15.46■□□□□ 0.07
CLN3-254ENST00000637050 CYB5R3P00387 301 aaPredicted RBP15.46■□□□□ 0.07
CLN3-254ENST00000637050 PMP2P02689 132 aa15.46■□□□□ 0.07
CLN3-254ENST00000637050 MDH2P40926 338 aaKnown RBP15.46■□□□□ 0.07
CLN3-254ENST00000637050 SRSF7Q16629 238 aaKnown RBP eCLIP15.46■□□□□ 0.07
CLN3-254ENST00000637050 TGIF2LYQ8IUE0 185 aa15.46■□□□□ 0.07
CLN3-254ENST00000637050 CD177Q8N6Q3 437 aa15.46■□□□□ 0.07
CLN3-254ENST00000637050 OR5AP2Q8NGF4 316 aa15.46■□□□□ 0.07
CLN3-254ENST00000637050 NUDT15Q9NV35 164 aa15.46■□□□□ 0.07
CLN3-254ENST00000637050 SLC2A8Q9NY64 477 aa15.46■□□□□ 0.07
CLN3-254ENST00000637050 DNAJB11Q9UBS4 358 aa15.46■□□□□ 0.07
CLN3-254ENST00000637050 ANXA10Q9UJ72 324 aa15.46■□□□□ 0.07
CLN3-254ENST00000637050 SPTBN1Q01082 2364 aaKnown RBP15.46■□□□□ 0.07
CLN3-254ENST00000637050 IGKV1D-17A0A075B6S4 117 aa15.45■□□□□ 0.06
CLN3-254ENST00000637050 TRBV6-6A0A0A6YYG2 114 aa15.45■□□□□ 0.06
CLN3-254ENST00000637050 DISC1C4P0D8 188 aa15.45■□□□□ 0.06
CLN3-254ENST00000637050 PSPNO60542 156 aa15.45■□□□□ 0.06
CLN3-254ENST00000637050 NDUFB6O95139 128 aa15.45■□□□□ 0.06
CLN3-254ENST00000637050 GOSR1O95249 250 aa15.45■□□□□ 0.06
CLN3-254ENST00000637050 CD8AP01732 235 aa15.45■□□□□ 0.06
CLN3-254ENST00000637050 IRF2P14316 349 aa15.45■□□□□ 0.06
CLN3-254ENST00000637050 PRDX2P32119 198 aa15.45■□□□□ 0.06
CLN3-254ENST00000637050 AGAP6Q5VW22 663 aa15.45■□□□□ 0.06
CLN3-254ENST00000637050 RSBN1Q5VWQ0 802 aaPredicted RBP15.45■□□□□ 0.06
CLN3-254ENST00000637050 C11orf71Q6IPW1 123 aa15.45■□□□□ 0.06
CLN3-254ENST00000637050 Q6ZS49 121 aa15.45■□□□□ 0.06
CLN3-254ENST00000637050 OR5T2Q8NGG2 359 aa15.45■□□□□ 0.06
CLN3-254ENST00000637050 OR5H2Q8NGV7 314 aa15.45■□□□□ 0.06
CLN3-254ENST00000637050 CHMP1AQ9HD42 196 aaPredicted RBP15.45■□□□□ 0.06
CLN3-254ENST00000637050 ZNF462Q96JM2 2506 aa15.45■□□□□ 0.06
CLN3-254ENST00000637050 ROS1P08922 2347 aa15.45■□□□□ 0.06
CLN3-254ENST00000637050 LRRC30A6NM36 301 aa15.44■□□□□ 0.06
CLN3-254ENST00000637050 POM121CA8CG34 1229 aa15.44■□□□□ 0.06
CLN3-254ENST00000637050 INMT-MINDY4F8WBC2 141 aa15.44■□□□□ 0.06
CLN3-254ENST00000637050 DANCRP0C864 163 aa15.44■□□□□ 0.06
CLN3-254ENST00000637050 CD80P33681 288 aa15.44■□□□□ 0.06
CLN3-254ENST00000637050 BTG1P62324 171 aa15.44■□□□□ 0.06
CLN3-254ENST00000637050 COL10A1Q03692 680 aa15.44■□□□□ 0.06
CLN3-254ENST00000637050 ZMYND11Q15326 602 aa15.44■□□□□ 0.06
CLN3-254ENST00000637050 RBMS2Q15434 407 aaKnown RBP15.44■□□□□ 0.06
CLN3-254ENST00000637050 CHRFAM7AQ494W8 412 aa15.44■□□□□ 0.06
CLN3-254ENST00000637050 FAM201AQ5SY85 155 aa15.44■□□□□ 0.06
CLN3-254ENST00000637050 DTX2Q86UW9 622 aa15.44■□□□□ 0.06
CLN3-254ENST00000637050 GAPTQ8N292 157 aa15.44■□□□□ 0.06
CLN3-254ENST00000637050 PLPPR1Q8TBJ4 325 aa15.44■□□□□ 0.06
CLN3-254ENST00000637050 MRPL30Q8TCC3 161 aaKnown RBP15.44■□□□□ 0.06
CLN3-254ENST00000637050 PPA2Q9H2U2 334 aa15.44■□□□□ 0.06
CLN3-254ENST00000637050 ZNF286AQ9HBT8 521 aa15.44■□□□□ 0.06
CLN3-254ENST00000637050 Q9N2K0 584 aa15.44■□□□□ 0.06
CLN3-254ENST00000637050 ZNF222Q9UK12 451 aa15.44■□□□□ 0.06
CLN3-254ENST00000637050 CACNA1DQ01668 2161 aa15.44■□□□□ 0.06
CLN3-254ENST00000637050 ARFGEF3Q5TH69 2177 aa15.44■□□□□ 0.06
CLN3-254ENST00000637050 IGHV3OR15-7A0A075B7D8 119 aa15.44■□□□□ 0.06
CLN3-254ENST00000637050 TFF1P04155 84 aa15.44■□□□□ 0.06
CLN3-254ENST00000637050 CSN2P05814 226 aa15.44■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms