RNA–Protein interactions for RNA: ENST00000636355.1

CLN3-248, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 975 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-248ENST00000636355 DPCDQ9BVM2 203 aaPredicted RBP8.94□□□□□ -0.98
CLN3-248ENST00000636355 TINAGL1Q9GZM7 467 aaPredicted RBP8.94□□□□□ -0.98
CLN3-248ENST00000636355 PPA2Q9H2U2 334 aa8.94□□□□□ -0.98
CLN3-248ENST00000636355 GHITMQ9H3K2 345 aa8.94□□□□□ -0.98
CLN3-248ENST00000636355 NECAP2Q9NVZ3 263 aa8.94□□□□□ -0.98
CLN3-248ENST00000636355 FZR1Q9UM11 496 aa8.94□□□□□ -0.98
CLN3-248ENST00000636355 ATP23Q9Y6H3 246 aa8.94□□□□□ -0.98
CLN3-248ENST00000636355 SPTBN1Q01082 2364 aaKnown RBP8.94□□□□□ -0.98
CLN3-248ENST00000636355 CFAP46Q8IYW2 2715 aa8.93□□□□□ -0.98
CLN3-248ENST00000636355 TRAV6A0A075B6T7 132 aa8.93□□□□□ -0.98
CLN3-248ENST00000636355 TRAV24A0A0B4J272 114 aa8.93□□□□□ -0.98
CLN3-248ENST00000636355 TMEM82A0PJX8 343 aa8.93□□□□□ -0.98
CLN3-248ENST00000636355 NKX2-6A6NCS4 301 aa8.93□□□□□ -0.98
CLN3-248ENST00000636355 C17orf100A8MU93 164 aa8.93□□□□□ -0.98
CLN3-248ENST00000636355 B9A039 149 aa8.93□□□□□ -0.98
CLN3-248ENST00000636355 J3QKU1 62 aa8.93□□□□□ -0.98
CLN3-248ENST00000636355 ARPC1BO15143 372 aaKnown RBP8.93□□□□□ -0.98
CLN3-248ENST00000636355 CREBL2O60519 120 aaPredicted RBP8.93□□□□□ -0.98
CLN3-248ENST00000636355 OR2H2O95918 312 aa8.93□□□□□ -0.98
CLN3-248ENST00000636355 HAND1O96004 215 aa8.93□□□□□ -0.98
CLN3-248ENST00000636355 IGHV1-46P01743 117 aa8.93□□□□□ -0.98
CLN3-248ENST00000636355 GRPP07492 148 aa8.93□□□□□ -0.98
CLN3-248ENST00000636355 GLRA1P23415 457 aa8.93□□□□□ -0.98
CLN3-248ENST00000636355 FPR2P25090 351 aa8.93□□□□□ -0.98
CLN3-248ENST00000636355 APOBEC3AP31941 199 aaPredicted RBP8.93□□□□□ -0.98
CLN3-248ENST00000636355 SERPINF1P36955 418 aa8.93□□□□□ -0.98
CLN3-248ENST00000636355 TNFAIP6P98066 277 aaPredicted RBP8.93□□□□□ -0.98
CLN3-248ENST00000636355 OR52W1Q6IF63 320 aa8.93□□□□□ -0.98
CLN3-248ENST00000636355 ZNF880Q6PDB4 577 aa8.93□□□□□ -0.98
CLN3-248ENST00000636355 VHLLQ6RSH7 139 aa8.93□□□□□ -0.98
CLN3-248ENST00000636355 GLDNQ6ZMI3 551 aaPredicted RBP8.93□□□□□ -0.98
CLN3-248ENST00000636355 PEG10Q86TG7 708 aaKnown RBP8.93□□□□□ -0.98
CLN3-248ENST00000636355 GLCCI1Q86VQ1 547 aa8.93□□□□□ -0.98
CLN3-248ENST00000636355 LRP11Q86VZ4 500 aa8.93□□□□□ -0.98
CLN3-248ENST00000636355 SUMF2Q8NBJ7 301 aa8.93□□□□□ -0.98
CLN3-248ENST00000636355 OR11L1Q8NGX0 322 aa8.93□□□□□ -0.98
CLN3-248ENST00000636355 LILRB1Q8NHL6 650 aaPredicted RBP8.93□□□□□ -0.98
CLN3-248ENST00000636355 TERB2Q8NHR7 220 aa8.93□□□□□ -0.98
CLN3-248ENST00000636355 NEK7Q8TDX7 302 aa8.93□□□□□ -0.98
CLN3-248ENST00000636355 ITLN2Q8WWU7 325 aaPredicted RBP8.93□□□□□ -0.98
CLN3-248ENST00000636355 ASB13Q8WXK3 278 aa8.93□□□□□ -0.98
CLN3-248ENST00000636355 SLC6A7Q99884 636 aa8.93□□□□□ -0.98
CLN3-248ENST00000636355 EGLN1Q9GZT9 426 aa8.93□□□□□ -0.98
CLN3-248ENST00000636355 MS4A5Q9H3V2 200 aa8.93□□□□□ -0.98
CLN3-248ENST00000636355 DECR2Q9NUI1 292 aa8.93□□□□□ -0.98
CLN3-248ENST00000636355 ETAA1Q9NY74 926 aa8.93□□□□□ -0.98
CLN3-248ENST00000636355 EHFQ9NZC4 300 aa8.93□□□□□ -0.98
CLN3-248ENST00000636355 GCN1Q92616 2671 aaKnown RBP8.93□□□□□ -0.98
CLN3-248ENST00000636355 ARFGEF3Q5TH69 2177 aa8.92□□□□□ -0.98
CLN3-248ENST00000636355 hCG_1807616A0A1W2PRN6 198 aa8.92□□□□□ -0.98
CLN3-248ENST00000636355 UBE2QL1A1L167 161 aa8.92□□□□□ -0.98
CLN3-248ENST00000636355 NPIPB11E5RHQ5 1161 aa8.92□□□□□ -0.98
CLN3-248ENST00000636355 SLC33A1O00400 549 aaPredicted RBP8.92□□□□□ -0.98
CLN3-248ENST00000636355 DEGS1O15121 323 aa8.92□□□□□ -0.98
CLN3-248ENST00000636355 ZNF44P15621 663 aa8.92□□□□□ -0.98
CLN3-248ENST00000636355 GLP1RP43220 463 aa8.92□□□□□ -0.98
CLN3-248ENST00000636355 PAN3Q58A45 887 aaKnown RBP8.92□□□□□ -0.98
CLN3-248ENST00000636355 PRAMEF6Q5VXH4 476 aa8.92□□□□□ -0.98
CLN3-248ENST00000636355 ZNF626Q68DY1 528 aa8.92□□□□□ -0.98
CLN3-248ENST00000636355 TRAT1Q6PIZ9 186 aa8.92□□□□□ -0.98
CLN3-248ENST00000636355 RTN4RL2Q86UN3 420 aa8.92□□□□□ -0.98
CLN3-248ENST00000636355 C1orf87Q8N0U7 546 aa8.92□□□□□ -0.98
CLN3-248ENST00000636355 OR13C8Q8NGS7 320 aa8.92□□□□□ -0.98
CLN3-248ENST00000636355 PPP1R35Q8TAP8 253 aa8.92□□□□□ -0.98
CLN3-248ENST00000636355 FAM222BQ8WU58 562 aa8.92□□□□□ -0.98
CLN3-248ENST00000636355 FAM216AQ8WUB2 273 aa8.92□□□□□ -0.98
CLN3-248ENST00000636355 LRRC29Q8WV35 223 aa8.92□□□□□ -0.98
CLN3-248ENST00000636355 ZNF488Q96MN9 340 aa8.92□□□□□ -0.98
CLN3-248ENST00000636355 CABLES2Q9BTV7 478 aa8.92□□□□□ -0.98
CLN3-248ENST00000636355 ST6GALNAC5Q9BVH7 336 aa8.92□□□□□ -0.98
CLN3-248ENST00000636355 OR51J1Q9H342 316 aa8.92□□□□□ -0.98
CLN3-248ENST00000636355 CHMP1AQ9HD42 196 aaPredicted RBP8.92□□□□□ -0.98
CLN3-248ENST00000636355 Q9N2K0 584 aa8.92□□□□□ -0.98
CLN3-248ENST00000636355 C1orf123Q9NWV4 160 aa8.92□□□□□ -0.98
CLN3-248ENST00000636355 IL36RNQ9UBH0 155 aa8.92□□□□□ -0.98
CLN3-248ENST00000636355 DOPEY1Q5JWR5 2465 aa8.92□□□□□ -0.98
CLN3-248ENST00000636355 CACNA1DQ01668 2161 aa8.92□□□□□ -0.98
CLN3-248ENST00000636355 A0A0A6YYJ9 748 aa8.91□□□□□ -0.98
CLN3-248ENST00000636355 TMEM30CPA0ZSE6 113 aa8.91□□□□□ -0.98
CLN3-248ENST00000636355 LRRC30A6NM36 301 aa8.91□□□□□ -0.98
CLN3-248ENST00000636355 DEFB108AA8MXU0 73 aa8.91□□□□□ -0.98
CLN3-248ENST00000636355 PYCARD-AS1I3L0S3 204 aa8.91□□□□□ -0.98
CLN3-248ENST00000636355 CCNKO75909 580 aa8.91□□□□□ -0.98
CLN3-248ENST00000636355 C1QL1O75973 258 aa8.91□□□□□ -0.98
CLN3-248ENST00000636355 FSTL3O95633 263 aa8.91□□□□□ -0.98
CLN3-248ENST00000636355 LHBP01229 141 aa8.91□□□□□ -0.98
CLN3-248ENST00000636355 HNRNPCP07910 306 aaKnown RBP eCLIP8.91□□□□□ -0.98
CLN3-248ENST00000636355 OR5H8P0DN80 308 aa8.91□□□□□ -0.98
CLN3-248ENST00000636355 MUC1P15941 1255 aaPredicted RBP8.91□□□□□ -0.98
CLN3-248ENST00000636355 GNLYP22749 145 aa8.91□□□□□ -0.98
CLN3-248ENST00000636355 PPOXP50336 477 aa8.91□□□□□ -0.98
CLN3-248ENST00000636355 TSPAN5P62079 268 aa8.91□□□□□ -0.98
CLN3-248ENST00000636355 MPPED2Q15777 294 aa8.91□□□□□ -0.98
CLN3-248ENST00000636355 ZNF672Q499Z4 452 aaPredicted RBP8.91□□□□□ -0.98
CLN3-248ENST00000636355 SCGB2B2Q4G0G5 96 aa8.91□□□□□ -0.98
CLN3-248ENST00000636355 ATPAF1Q5TC12 328 aaPredicted RBP8.91□□□□□ -0.98
CLN3-248ENST00000636355 ZNF497Q6ZNH5 498 aa8.91□□□□□ -0.98
CLN3-248ENST00000636355 TCTE3Q8IZS6 198 aa8.91□□□□□ -0.98
CLN3-248ENST00000636355 TMEM185AQ8NFB2 350 aa8.91□□□□□ -0.98
CLN3-248ENST00000636355 OR4A4PQ8NGN8 299 aa8.91□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 66.5 ms