RNA–Protein interactions for RNA: ENST00000635973.1

CLN3-243, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,084 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-243ENST00000635973 PCGF1Q9BSM1 259 aa14.93□□□□□ -0.02
CLN3-243ENST00000635973 ZMAT3Q9HA38 289 aaKnown RBP14.93□□□□□ -0.02
CLN3-243ENST00000635973 SEBOXQ9HB31 216 aaPredicted RBP14.93□□□□□ -0.02
CLN3-243ENST00000635973 ST3GAL6Q9Y274 331 aa14.93□□□□□ -0.02
CLN3-243ENST00000635973 TMEM82A0PJX8 343 aa14.92□□□□□ -0.02
CLN3-243ENST00000635973 CRTAPO75718 401 aaPredicted RBP14.92□□□□□ -0.02
CLN3-243ENST00000635973 TOX4O94842 621 aa14.92□□□□□ -0.02
CLN3-243ENST00000635973 UBBP0CG47 229 aa14.92□□□□□ -0.02
CLN3-243ENST00000635973 HTR2CP28335 458 aa14.92□□□□□ -0.02
CLN3-243ENST00000635973 RBM11P57052 281 aaKnown RBP14.92□□□□□ -0.02
CLN3-243ENST00000635973 ARF6P62330 175 aa14.92□□□□□ -0.02
CLN3-243ENST00000635973 FOXL1Q12952 345 aa14.92□□□□□ -0.02
CLN3-243ENST00000635973 LY6G5BQ8NDX9 201 aa14.92□□□□□ -0.02
CLN3-243ENST00000635973 OR51T1Q8NGJ9 327 aa14.92□□□□□ -0.02
CLN3-243ENST00000635973 OR6M1Q8NGM8 313 aa14.92□□□□□ -0.02
CLN3-243ENST00000635973 CST11Q9H112 138 aa14.92□□□□□ -0.02
CLN3-243ENST00000635973 PPA2Q9H2U2 334 aa14.92□□□□□ -0.02
CLN3-243ENST00000635973 C19orf12Q9NSK7 152 aa14.92□□□□□ -0.02
CLN3-243ENST00000635973 GHRLQ9UBU3 117 aa14.92□□□□□ -0.02
CLN3-243ENST00000635973 TRAV1-2A0A0B4J238 106 aa14.91□□□□□ -0.02
CLN3-243ENST00000635973 LOC100506127A0A0U1RQW1 187 aa14.91□□□□□ -0.02
CLN3-243ENST00000635973 A0A1W2PP11 408 aa14.91□□□□□ -0.02
CLN3-243ENST00000635973 A0A1W2PPH5 198 aa14.91□□□□□ -0.02
CLN3-243ENST00000635973 HSPB6O14558 160 aa14.91□□□□□ -0.02
CLN3-243ENST00000635973 PSPNO60542 156 aa14.91□□□□□ -0.02
CLN3-243ENST00000635973 OR7C1O76099 320 aaPredicted RBP14.91□□□□□ -0.02
CLN3-243ENST00000635973 PRTN3P24158 256 aa14.91□□□□□ -0.02
CLN3-243ENST00000635973 OR3A1P47881 315 aa14.91□□□□□ -0.02
CLN3-243ENST00000635973 PSMD7P51665 324 aa14.91□□□□□ -0.02
CLN3-243ENST00000635973 BLMHQ13867 455 aa14.91□□□□□ -0.02
CLN3-243ENST00000635973 RAB11BQ15907 218 aa14.91□□□□□ -0.02
CLN3-243ENST00000635973 PAN3Q58A45 887 aaKnown RBP14.91□□□□□ -0.02
CLN3-243ENST00000635973 AWAT1Q58HT5 328 aa14.91□□□□□ -0.02
CLN3-243ENST00000635973 KLF17Q5JT82 389 aaPredicted RBP14.91□□□□□ -0.02
CLN3-243ENST00000635973 Q6P435 159 aa14.91□□□□□ -0.02
CLN3-243ENST00000635973 C17orf107Q6ZR85 190 aa14.91□□□□□ -0.02
CLN3-243ENST00000635973 LINC00596Q86U02 117 aa14.91□□□□□ -0.02
CLN3-243ENST00000635973 LYPD6Q86Y78 171 aa14.91□□□□□ -0.02
CLN3-243ENST00000635973 BCL6BQ8N143 479 aaPredicted RBP14.91□□□□□ -0.02
CLN3-243ENST00000635973 Q8NFD4 153 aa14.91□□□□□ -0.02
CLN3-243ENST00000635973 OR4S1Q8NGB4 309 aa14.91□□□□□ -0.02
CLN3-243ENST00000635973 SGMS2Q8NHU3 365 aa14.91□□□□□ -0.02
CLN3-243ENST00000635973 C8orf46Q8TAG6 207 aa14.91□□□□□ -0.02
CLN3-243ENST00000635973 FAM46BQ96A09 425 aa14.91□□□□□ -0.02
CLN3-243ENST00000635973 WDFY2Q96P53 400 aa14.91□□□□□ -0.02
CLN3-243ENST00000635973 DUX5Q96PT3 197 aa14.91□□□□□ -0.02
CLN3-243ENST00000635973 CHCHD6Q9BRQ6 235 aa14.91□□□□□ -0.02
CLN3-243ENST00000635973 OR51E2Q9H255 320 aa14.91□□□□□ -0.02
CLN3-243ENST00000635973 BANF2Q9H503 90 aa14.91□□□□□ -0.02
CLN3-243ENST00000635973 TXNL4BQ9NX01 149 aaKnown RBP14.91□□□□□ -0.02
CLN3-243ENST00000635973 IGHV3OR16-10A0A075B7F0 116 aa14.9□□□□□ -0.02
CLN3-243ENST00000635973 TRAV40A0A0B4J280 105 aa14.9□□□□□ -0.02
CLN3-243ENST00000635973 DNAJC9-AS1A6NH13 148 aa14.9□□□□□ -0.02
CLN3-243ENST00000635973 SLC33A1O00400 549 aaPredicted RBP14.9□□□□□ -0.02
CLN3-243ENST00000635973 MGST3O14880 152 aa14.9□□□□□ -0.02
CLN3-243ENST00000635973 GADD45AP24522 165 aa14.9□□□□□ -0.02
CLN3-243ENST00000635973 P2RY14Q15391 338 aa14.9□□□□□ -0.02
CLN3-243ENST00000635973 TIMM50Q3ZCQ8 353 aa14.9□□□□□ -0.02
CLN3-243ENST00000635973 NHLRC3Q5JS37 347 aa14.9□□□□□ -0.02
CLN3-243ENST00000635973 C1orf100Q5SVJ3 147 aa14.9□□□□□ -0.02
CLN3-243ENST00000635973 SLC25A28Q96A46 364 aa14.9□□□□□ -0.02
CLN3-243ENST00000635973 MRPS24Q96EL2 167 aaKnown RBP14.9□□□□□ -0.02
CLN3-243ENST00000635973 SELENOIQ9C0D9 397 aa14.9□□□□□ -0.02
CLN3-243ENST00000635973 KPTNQ9Y664 436 aa14.9□□□□□ -0.02
CLN3-243ENST00000635973 V9GY05 133 aa14.9□□□□□ -0.02
CLN3-243ENST00000635973 A0A0G2JK05 382 aa14.89□□□□□ -0.03
CLN3-243ENST00000635973 FUOMA2VDF0 154 aa14.89□□□□□ -0.03
CLN3-243ENST00000635973 SLC17A2O00624 439 aa14.89□□□□□ -0.03
CLN3-243ENST00000635973 GEMIN2O14893 280 aaKnown RBP14.89□□□□□ -0.03
CLN3-243ENST00000635973 SLC22A1O15245 554 aa14.89□□□□□ -0.03
CLN3-243ENST00000635973 MPIG6BO95866 241 aa14.89□□□□□ -0.03
CLN3-243ENST00000635973 SMIM18P0DKX4 95 aa14.89□□□□□ -0.03
CLN3-243ENST00000635973 MGMTP16455 207 aa14.89□□□□□ -0.03
CLN3-243ENST00000635973 RAB3BP20337 219 aa14.89□□□□□ -0.03
CLN3-243ENST00000635973 LMO1P25800 156 aa14.89□□□□□ -0.03
CLN3-243ENST00000635973 FGF9P31371 208 aaPredicted RBP14.89□□□□□ -0.03
CLN3-243ENST00000635973 RANBP1P43487 201 aa14.89□□□□□ -0.03
CLN3-243ENST00000635973 ATXN7L3Q14CW9 347 aaPredicted RBP14.89□□□□□ -0.03
CLN3-243ENST00000635973 TAF9Q16594 264 aa14.89□□□□□ -0.03
CLN3-243ENST00000635973 MPV17LQ2QL34 196 aa14.89□□□□□ -0.03
CLN3-243ENST00000635973 ATAD3CQ5T2N8 411 aa14.89□□□□□ -0.03
CLN3-243ENST00000635973 KIR3DL3Q8N743 410 aa14.89□□□□□ -0.03
CLN3-243ENST00000635973 TPRX1Q8N7U7 411 aa14.89□□□□□ -0.03
CLN3-243ENST00000635973 NEK7Q8TDX7 302 aa14.89□□□□□ -0.03
CLN3-243ENST00000635973 UPRTQ96BW1 309 aa14.89□□□□□ -0.03
CLN3-243ENST00000635973 DMRTB1Q96MA1 342 aa14.89□□□□□ -0.03
CLN3-243ENST00000635973 KCTD7Q96MP8 289 aa14.89□□□□□ -0.03
CLN3-243ENST00000635973 GFI1Q99684 422 aa14.89□□□□□ -0.03
CLN3-243ENST00000635973 ING3Q9NXR8 418 aa14.89□□□□□ -0.03
CLN3-243ENST00000635973 TENM1Q9UKZ4 2725 aa14.89□□□□□ -0.03
CLN3-243ENST00000635973 hADV38S2A0JD32 116 aa14.88□□□□□ -0.03
CLN3-243ENST00000635973 TRIM64CA6NLI5 447 aa14.88□□□□□ -0.03
CLN3-243ENST00000635973 M0R1W7 72 aa14.88□□□□□ -0.03
CLN3-243ENST00000635973 BPNT1O95861 308 aa14.88□□□□□ -0.03
CLN3-243ENST00000635973 IGHV4-38-2P0DP08 117 aa14.88□□□□□ -0.03
CLN3-243ENST00000635973 HKR1P10072 659 aa14.88□□□□□ -0.03
CLN3-243ENST00000635973 ARSBP15848 533 aa14.88□□□□□ -0.03
CLN3-243ENST00000635973 JUNBP17275 347 aaPredicted RBP14.88□□□□□ -0.03
CLN3-243ENST00000635973 OR10A3P58181 314 aa14.88□□□□□ -0.03
CLN3-243ENST00000635973 TRAPPC6BQ86SZ2 158 aa14.88□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 52.7 ms