RNA–Protein interactions for RNA: ENST00000625916.1

SCN1A-208, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 4

Gene SCN1A, Length 560 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-208ENST00000625916 OR2W3Q7Z3T1 314 aa0.43□□□□□ -2.34
SCN1A-208ENST00000625916 GALNT10Q86SR1 603 aa0.43□□□□□ -2.34
SCN1A-208ENST00000625916 SETD3Q86TU7 594 aaPredicted RBP0.43□□□□□ -2.34
SCN1A-208ENST00000625916 NIT1Q86X76 327 aa0.43□□□□□ -2.34
SCN1A-208ENST00000625916 OFCC1Q8IZS5 231 aa0.43□□□□□ -2.34
SCN1A-208ENST00000625916 SLC25A45Q8N413 288 aa0.43□□□□□ -2.34
SCN1A-208ENST00000625916 OR10P1Q8NGE3 313 aa0.43□□□□□ -2.34
SCN1A-208ENST00000625916 NDNFQ8TB73 568 aa0.43□□□□□ -2.34
SCN1A-208ENST00000625916 PIH1D2Q8WWB5 315 aa0.43□□□□□ -2.34
SCN1A-208ENST00000625916 CMBLQ96DG6 245 aa0.43□□□□□ -2.34
SCN1A-208ENST00000625916 ADTRPQ96IZ2 230 aa0.43□□□□□ -2.34
SCN1A-208ENST00000625916 CAPZA3Q96KX2 299 aa0.43□□□□□ -2.34
SCN1A-208ENST00000625916 C20orf144Q9BQM9 153 aa0.43□□□□□ -2.34
SCN1A-208ENST00000625916 ANP32EQ9BTT0 268 aa0.43□□□□□ -2.34
SCN1A-208ENST00000625916 TSSK6Q9BXA6 273 aa0.43□□□□□ -2.34
SCN1A-208ENST00000625916 SLC38A1Q9H2H9 487 aa0.43□□□□□ -2.34
SCN1A-208ENST00000625916 PRORYQ9H606 182 aa0.43□□□□□ -2.34
SCN1A-208ENST00000625916 KCNIP2Q9NS61 270 aa0.43□□□□□ -2.34
SCN1A-208ENST00000625916 AHSPQ9NZD4 102 aa0.43□□□□□ -2.34
SCN1A-208ENST00000625916 SLC22A14Q9Y267 594 aa0.43□□□□□ -2.34
SCN1A-208ENST00000625916 PHLDA3Q9Y5J5 127 aa0.43□□□□□ -2.34
SCN1A-208ENST00000625916 RGS12O14924 1447 aa0.43□□□□□ -2.34
SCN1A-208ENST00000625916 CEP170Q5SW79 1584 aa0.43□□□□□ -2.34
SCN1A-208ENST00000625916 CR1P17927 2039 aa0.43□□□□□ -2.34
SCN1A-208ENST00000625916 NUP205Q92621 2012 aa0.42□□□□□ -2.34
SCN1A-208ENST00000625916 CRB1P82279 1406 aa0.42□□□□□ -2.34
SCN1A-208ENST00000625916 TRGV2A0A075B6R0 118 aa0.42□□□□□ -2.34
SCN1A-208ENST00000625916 IGHV1-45A0A0A0MS14 117 aa0.42□□□□□ -2.34
SCN1A-208ENST00000625916 TRAV25A0A0B4J276 109 aa0.42□□□□□ -2.34
SCN1A-208ENST00000625916 LOC102725191A0A1B0GVB3 256 aa0.42□□□□□ -2.34
SCN1A-208ENST00000625916 A0A1W2PRF3 423 aa0.42□□□□□ -2.34
SCN1A-208ENST00000625916 A0A1W2PRM7 423 aa0.42□□□□□ -2.34
SCN1A-208ENST00000625916 SLC25A20O43772 301 aa0.42□□□□□ -2.34
SCN1A-208ENST00000625916 KLK1P06870 262 aa0.42□□□□□ -2.34
SCN1A-208ENST00000625916 OR8G3PP0DMU2 310 aa0.42□□□□□ -2.34
SCN1A-208ENST00000625916 ZNF7P17097 686 aaPredicted RBP0.42□□□□□ -2.34
SCN1A-208ENST00000625916 RPS5P46782 204 aaKnown RBP0.42□□□□□ -2.34
SCN1A-208ENST00000625916 TAS2R60P59551 318 aa0.42□□□□□ -2.34
SCN1A-208ENST00000625916 SLC35B1P78383 322 aa0.42□□□□□ -2.34
SCN1A-208ENST00000625916 Q499Y3 187 aa0.42□□□□□ -2.34
SCN1A-208ENST00000625916 PLCXD3Q63HM9 321 aa0.42□□□□□ -2.34
SCN1A-208ENST00000625916 GLYATQ6IB77 296 aa0.42□□□□□ -2.34
SCN1A-208ENST00000625916 LAIR2Q6ISS4 152 aa0.42□□□□□ -2.34
SCN1A-208ENST00000625916 VN1R4Q7Z5H5 301 aa0.42□□□□□ -2.34
SCN1A-208ENST00000625916 MARCH3Q86UD3 253 aa0.42□□□□□ -2.34
SCN1A-208ENST00000625916 CYP4Z1Q86W10 505 aa0.42□□□□□ -2.34
SCN1A-208ENST00000625916 NELFCDQ8IXH7 590 aa0.42□□□□□ -2.34
SCN1A-208ENST00000625916 C10orf126Q8N4M7 172 aa0.42□□□□□ -2.34
SCN1A-208ENST00000625916 OR11G2Q8NGC1 345 aa0.42□□□□□ -2.34
SCN1A-208ENST00000625916 OR4X1Q8NH49 305 aa0.42□□□□□ -2.34
SCN1A-208ENST00000625916 NAT6Q93015 286 aa0.42□□□□□ -2.34
SCN1A-208ENST00000625916 CPB2Q96IY4 423 aa0.42□□□□□ -2.34
SCN1A-208ENST00000625916 OLFM3Q96PB7 478 aa0.42□□□□□ -2.34
SCN1A-208ENST00000625916 NAA38Q9BRA0 125 aaKnown RBP0.42□□□□□ -2.34
SCN1A-208ENST00000625916 SHCBP1LQ9BZQ2 653 aa0.42□□□□□ -2.34
SCN1A-208ENST00000625916 BCL2L14Q9BZR8 327 aa0.42□□□□□ -2.34
SCN1A-208ENST00000625916 EXO5Q9H790 373 aa0.42□□□□□ -2.34
SCN1A-208ENST00000625916 ZMAT5Q9UDW3 170 aaKnown RBP0.42□□□□□ -2.34
SCN1A-208ENST00000625916 ANXA10Q9UJ72 324 aa0.42□□□□□ -2.34
SCN1A-208ENST00000625916 RPUSD1Q9UJJ7 312 aaKnown RBP0.42□□□□□ -2.34
SCN1A-208ENST00000625916 FBXL3Q9UKT7 428 aa0.42□□□□□ -2.34
SCN1A-208ENST00000625916 LINC00588Q9Y4M8 146 aa0.42□□□□□ -2.34
SCN1A-208ENST00000625916 MACF1Q9UPN3 7388 aaKnown RBP0.42□□□□□ -2.34
SCN1A-208ENST00000625916 POLR3AO14802 1390 aaPredicted RBP0.42□□□□□ -2.34
SCN1A-208ENST00000625916 A8MWP6 167 aa0.41□□□□□ -2.34
SCN1A-208ENST00000625916 M0R1B8 84 aa0.41□□□□□ -2.34
SCN1A-208ENST00000625916 CASQ2O14958 399 aaPredicted RBP0.41□□□□□ -2.34
SCN1A-208ENST00000625916 CECR9P0C854 216 aa0.41□□□□□ -2.34
SCN1A-208ENST00000625916 PSMD4P55036 377 aaKnown RBP0.41□□□□□ -2.34
SCN1A-208ENST00000625916 RAB25P57735 213 aa0.41□□□□□ -2.34
SCN1A-208ENST00000625916 RPL31P62899 125 aaKnown RBP0.41□□□□□ -2.34
SCN1A-208ENST00000625916 LCN2P80188 198 aa0.41□□□□□ -2.34
SCN1A-208ENST00000625916 IFFO1Q0D2I5 559 aa0.41□□□□□ -2.34
SCN1A-208ENST00000625916 APOFQ13790 326 aa0.41□□□□□ -2.34
SCN1A-208ENST00000625916 GOLGA7BQ2TAP0 167 aa0.41□□□□□ -2.34
SCN1A-208ENST00000625916 CEACAM21Q3KPI0 293 aa0.41□□□□□ -2.34
SCN1A-208ENST00000625916 NXNL2Q5VZ03 156 aa0.41□□□□□ -2.34
SCN1A-208ENST00000625916 ULK3Q6PHR2 472 aa0.41□□□□□ -2.34
SCN1A-208ENST00000625916 Q6ZRN7 208 aaPredicted RBP0.41□□□□□ -2.34
SCN1A-208ENST00000625916 SLC35D2Q76EJ3 337 aa0.41□□□□□ -2.34
SCN1A-208ENST00000625916 KATNAL2Q8IYT4 538 aa0.41□□□□□ -2.34
SCN1A-208ENST00000625916 COMMD1Q8N668 190 aa0.41□□□□□ -2.34
SCN1A-208ENST00000625916 OR51A7Q8NH64 312 aa0.41□□□□□ -2.34
SCN1A-208ENST00000625916 WDR55Q9H6Y2 383 aaPredicted RBP0.41□□□□□ -2.34
SCN1A-208ENST00000625916 DDIT4Q9NX09 232 aa0.41□□□□□ -2.34
SCN1A-208ENST00000625916 RBM12B-AS1Q9P1G2 102 aa0.41□□□□□ -2.34
SCN1A-208ENST00000625916 NRCAMQ92823 1304 aa0.4□□□□□ -2.34
SCN1A-208ENST00000625916 MUC21A0A0G2JKD1 596 aa0.4□□□□□ -2.35
SCN1A-208ENST00000625916 A0A0G2JQZ4 141 aa0.4□□□□□ -2.35
SCN1A-208ENST00000625916 MUC21A0A140T8X8 626 aa0.4□□□□□ -2.35
SCN1A-208ENST00000625916 IGSF23A1L1A6 192 aa0.4□□□□□ -2.35
SCN1A-208ENST00000625916 ARGFXA6NJG6 315 aa0.4□□□□□ -2.35
SCN1A-208ENST00000625916 ZNF99A8MXY4 864 aaPredicted RBP0.4□□□□□ -2.35
SCN1A-208ENST00000625916 SUPT3HB4E1H0 165 aa0.4□□□□□ -2.35
SCN1A-208ENST00000625916 GATCO43716 136 aaKnown RBP0.4□□□□□ -2.35
SCN1A-208ENST00000625916 XKP51811 444 aa0.4□□□□□ -2.35
SCN1A-208ENST00000625916 BEX3Q00994 111 aa0.4□□□□□ -2.35
SCN1A-208ENST00000625916 PRB3Q04118 309 aaPredicted RBP0.4□□□□□ -2.35
SCN1A-208ENST00000625916 DOC2AQ14183 400 aa0.4□□□□□ -2.35
SCN1A-208ENST00000625916 WDR43Q15061 677 aaKnown RBP eCLIP0.4□□□□□ -2.35
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms