RNA–Protein interactions for RNA: ENST00000614678.1

CPNE3-208, Transcript of copine 3, human

TSL 1 (best)

Gene CPNE3, Length 4,201 nt, Biotype retained intron, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CPNE3-208	ENST00000614678	NDUFA2	O43678	99 aa		4.62	□□□□□ -1.67
CPNE3-208	ENST00000614678	KNG1	P01042	644 aa		4.62	□□□□□ -1.67
CPNE3-208	ENST00000614678	CFP	P27918	469 aa		4.62	□□□□□ -1.67
CPNE3-208	ENST00000614678	NPY4R	P50391	375 aa		4.62	□□□□□ -1.67
CPNE3-208	ENST00000614678	MZT1	Q08AG7	82 aa		4.62	□□□□□ -1.67
CPNE3-208	ENST00000614678	RIPK1	Q13546	671 aa		4.62	□□□□□ -1.67
CPNE3-208	ENST00000614678	SSX2	Q16385	188 aa		4.62	□□□□□ -1.67
CPNE3-208	ENST00000614678		Q499Y3	187 aa		4.62	□□□□□ -1.67
CPNE3-208	ENST00000614678	LHFPL2	Q6ZUX7	228 aa		4.62	□□□□□ -1.67
CPNE3-208	ENST00000614678	MRGPRD	Q8TDS7	321 aa		4.62	□□□□□ -1.67
CPNE3-208	ENST00000614678	ZNF418	Q8TF45	676 aa	Predicted RBP	4.62	□□□□□ -1.67
CPNE3-208	ENST00000614678	GCDH	Q92947	438 aa	Predicted RBP	4.62	□□□□□ -1.67
CPNE3-208	ENST00000614678	FOXRED1	Q96CU9	486 aa	Predicted RBP	4.62	□□□□□ -1.67
CPNE3-208	ENST00000614678	KIF25	Q9UIL4	384 aa		4.62	□□□□□ -1.67
CPNE3-208	ENST00000614678	AK6	Q9Y3D8	172 aa	Known RBP	4.62	□□□□□ -1.67
CPNE3-208	ENST00000614678		A0A0A6YYD4	124 aa		4.62	□□□□□ -1.67
CPNE3-208	ENST00000614678	EFCAB10	A6NFE3	127 aa		4.62	□□□□□ -1.67
CPNE3-208	ENST00000614678		H3BUX3	64 aa		4.62	□□□□□ -1.67
CPNE3-208	ENST00000614678	IER3	P46695	156 aa		4.62	□□□□□ -1.67
CPNE3-208	ENST00000614678	KCNJ8	Q15842	424 aa		4.62	□□□□□ -1.67
CPNE3-208	ENST00000614678	C17orf58	Q2M2W7	97 aa		4.62	□□□□□ -1.67
CPNE3-208	ENST00000614678	AWAT1	Q58HT5	328 aa		4.62	□□□□□ -1.67
CPNE3-208	ENST00000614678	GLIPR1L1	Q6UWM5	242 aa		4.62	□□□□□ -1.67
CPNE3-208	ENST00000614678	LRRTM1	Q86UE6	522 aa		4.62	□□□□□ -1.67
CPNE3-208	ENST00000614678	ZDHHC16	Q969W1	377 aa		4.62	□□□□□ -1.67
CPNE3-208	ENST00000614678	MED30	Q96HR3	178 aa		4.62	□□□□□ -1.67
CPNE3-208	ENST00000614678	HDHD3	Q9BSH5	251 aa	Predicted RBP	4.62	□□□□□ -1.67
CPNE3-208	ENST00000614678	CNOT2	Q9NZN8	540 aa	Known RBP	4.62	□□□□□ -1.67
CPNE3-208	ENST00000614678	FBLN5	Q9UBX5	448 aa		4.62	□□□□□ -1.67
CPNE3-208	ENST00000614678	ST3GAL6	Q9Y274	331 aa		4.62	□□□□□ -1.67
CPNE3-208	ENST00000614678	HAX1	O00165	279 aa		4.61	□□□□□ -1.67
CPNE3-208	ENST00000614678	OR7C1	O76099	320 aa	Predicted RBP	4.61	□□□□□ -1.67
CPNE3-208	ENST00000614678	RCC1	P18754	421 aa	Predicted RBP	4.61	□□□□□ -1.67
CPNE3-208	ENST00000614678	EEF1B2	P24534	225 aa	Known RBP	4.61	□□□□□ -1.67
CPNE3-208	ENST00000614678	CDK2	P24941	298 aa		4.61	□□□□□ -1.67
CPNE3-208	ENST00000614678	DYNC1I2	Q13409	638 aa	Known RBP	4.61	□□□□□ -1.67
CPNE3-208	ENST00000614678	CD276	Q5ZPR3	534 aa		4.61	□□□□□ -1.67
CPNE3-208	ENST00000614678	GDPD3	Q7L5L3	318 aa		4.61	□□□□□ -1.67
CPNE3-208	ENST00000614678	CEACAM19	Q7Z692	300 aa		4.61	□□□□□ -1.67
CPNE3-208	ENST00000614678	LYG1	Q8N1E2	194 aa		4.61	□□□□□ -1.67
CPNE3-208	ENST00000614678	PRR18	Q8N4B5	295 aa		4.61	□□□□□ -1.67
CPNE3-208	ENST00000614678	SUCNR1	Q9BXA5	334 aa		4.61	□□□□□ -1.67
CPNE3-208	ENST00000614678	ERGIC3	Q9Y282	383 aa		4.61	□□□□□ -1.67
CPNE3-208	ENST00000614678	UBE2QL1	A1L167	161 aa		4.61	□□□□□ -1.67
CPNE3-208	ENST00000614678	SC5D	O75845	299 aa		4.61	□□□□□ -1.67
CPNE3-208	ENST00000614678	IGHV1-8	P0DP01	117 aa		4.61	□□□□□ -1.67
CPNE3-208	ENST00000614678	HTR2C	P28335	458 aa		4.61	□□□□□ -1.67
CPNE3-208	ENST00000614678	BDKRB2	P30411	391 aa		4.61	□□□□□ -1.67
CPNE3-208	ENST00000614678	UNC119	Q13432	240 aa		4.61	□□□□□ -1.67
CPNE3-208	ENST00000614678	P2RY14	Q15391	338 aa		4.61	□□□□□ -1.67
CPNE3-208	ENST00000614678	CCDC58	Q4VC31	144 aa		4.61	□□□□□ -1.67
CPNE3-208	ENST00000614678	TRAPPC6B	Q86SZ2	158 aa		4.61	□□□□□ -1.67
CPNE3-208	ENST00000614678	SUMF2	Q8NBJ7	301 aa		4.61	□□□□□ -1.67
CPNE3-208	ENST00000614678	OR4K15	Q8NH41	348 aa		4.61	□□□□□ -1.67
CPNE3-208	ENST00000614678	SPSB1	Q96BD6	273 aa		4.61	□□□□□ -1.67
CPNE3-208	ENST00000614678	ZNF286A	Q9HBT8	521 aa		4.61	□□□□□ -1.67
CPNE3-208	ENST00000614678	KPTN	Q9Y664	436 aa		4.61	□□□□□ -1.67
CPNE3-208	ENST00000614678	HSPE1-MOB4	S4R3N1	261 aa		4.61	□□□□□ -1.67
CPNE3-208	ENST00000614678	DEGS1	O15121	323 aa		4.61	□□□□□ -1.67
CPNE3-208	ENST00000614678	SLC31A2	O15432	143 aa		4.61	□□□□□ -1.67
CPNE3-208	ENST00000614678	ZNF728	P0DKX0	622 aa		4.61	□□□□□ -1.67
CPNE3-208	ENST00000614678	PRKACB	P22694	351 aa		4.61	□□□□□ -1.67
CPNE3-208	ENST00000614678	FPR2	P25090	351 aa		4.61	□□□□□ -1.67
CPNE3-208	ENST00000614678	NFYB	P25208	207 aa		4.61	□□□□□ -1.67
CPNE3-208	ENST00000614678	EFNB2	P52799	333 aa		4.61	□□□□□ -1.67
CPNE3-208	ENST00000614678	LINC00205	P59089	165 aa		4.61	□□□□□ -1.67
CPNE3-208	ENST00000614678	RBM39	Q14498	530 aa	Known RBP	4.61	□□□□□ -1.67
CPNE3-208	ENST00000614678	RSU1	Q15404	277 aa		4.61	□□□□□ -1.67
CPNE3-208	ENST00000614678	KRBOX4	Q5JUW0	171 aa		4.61	□□□□□ -1.67
CPNE3-208	ENST00000614678	ATAD3C	Q5T2N8	411 aa		4.61	□□□□□ -1.67
CPNE3-208	ENST00000614678	C10orf99	Q6UWK7	81 aa		4.61	□□□□□ -1.67
CPNE3-208	ENST00000614678	CREB3L1	Q96BA8	519 aa		4.61	□□□□□ -1.67
CPNE3-208	ENST00000614678	SSX3	Q99909	188 aa		4.61	□□□□□ -1.67
CPNE3-208	ENST00000614678	PARP12	Q9H0J9	701 aa	Known RBP	4.61	□□□□□ -1.67
CPNE3-208	ENST00000614678	SLITRK2	Q9H156	845 aa		4.61	□□□□□ -1.67
CPNE3-208	ENST00000614678	METTL8	Q9H825	291 aa	Known RBP	4.61	□□□□□ -1.67
CPNE3-208	ENST00000614678	EXOSC4	Q9NPD3	245 aa	Known RBP	4.61	□□□□□ -1.67
CPNE3-208	ENST00000614678	TMEM138	Q9NPI0	162 aa		4.61	□□□□□ -1.67
CPNE3-208	ENST00000614678	RASL12	Q9NYN1	266 aa		4.61	□□□□□ -1.67
CPNE3-208	ENST00000614678	C1RL	Q9NZP8	487 aa		4.61	□□□□□ -1.67
CPNE3-208	ENST00000614678	RGS10	O43665	173 aa		4.61	□□□□□ -1.67
CPNE3-208	ENST00000614678	ARG1	P05089	322 aa		4.61	□□□□□ -1.67
CPNE3-208	ENST00000614678	PCMT1	P22061	227 aa		4.61	□□□□□ -1.67
CPNE3-208	ENST00000614678	REG1B	P48304	166 aa		4.61	□□□□□ -1.67
CPNE3-208	ENST00000614678	GNG10	P50151	68 aa		4.61	□□□□□ -1.67
CPNE3-208	ENST00000614678	C16orf87	Q6PH81	154 aa		4.61	□□□□□ -1.67
CPNE3-208	ENST00000614678	C1orf122	Q6ZSJ8	110 aa		4.61	□□□□□ -1.67
CPNE3-208	ENST00000614678	MGLL	Q99685	303 aa		4.61	□□□□□ -1.67
CPNE3-208	ENST00000614678	ZMAT3	Q9HA38	289 aa	Known RBP	4.61	□□□□□ -1.67
CPNE3-208	ENST00000614678	ACOT13	Q9NPJ3	140 aa		4.61	□□□□□ -1.67
CPNE3-208	ENST00000614678	CHCHD3	Q9NX63	227 aa	Known RBP	4.61	□□□□□ -1.67
CPNE3-208	ENST00000614678	C17orf98	A8MV24	154 aa		4.6	□□□□□ -1.67
CPNE3-208	ENST00000614678	ZNF736	B4DX44	427 aa	Predicted RBP	4.6	□□□□□ -1.67
CPNE3-208	ENST00000614678	CHRM2	P08172	466 aa		4.6	□□□□□ -1.67
CPNE3-208	ENST00000614678	CCDC159	P0C7I6	412 aa		4.6	□□□□□ -1.67
CPNE3-208	ENST00000614678	CLEC2L	P0C7M8	214 aa		4.6	□□□□□ -1.67
CPNE3-208	ENST00000614678	GLP1R	P43220	463 aa		4.6	□□□□□ -1.67
CPNE3-208	ENST00000614678	P2RX3	P56373	397 aa		4.6	□□□□□ -1.67
CPNE3-208	ENST00000614678	BLCAP	P62952	87 aa		4.6	□□□□□ -1.67
CPNE3-208	ENST00000614678	MOGAT2	Q3SYC2	334 aa		4.6	□□□□□ -1.67

Retrieved 100 of 20,778 RNA–protein pairs in 57 ms