RNA–Protein interactions for RNA: ENST00000613444.4

USP39-220, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,161 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-220ENST00000613444 MICBQ29980 383 aa11.98□□□□□ -0.49
USP39-220ENST00000613444 PLET1Q6UQ28 207 aa11.98□□□□□ -0.49
USP39-220ENST00000613444 FAM90A1Q86YD7 464 aa11.98□□□□□ -0.49
USP39-220ENST00000613444 BEST4Q8NFU0 473 aa11.98□□□□□ -0.49
USP39-220ENST00000613444 DPAGT1Q9H3H5 408 aa11.98□□□□□ -0.49
USP39-220ENST00000613444 C12orf4Q9NQ89 552 aa11.98□□□□□ -0.49
USP39-220ENST00000613444 FAIMQ9NVQ4 179 aa11.98□□□□□ -0.49
USP39-220ENST00000613444 TREM2Q9NZC2 230 aa11.98□□□□□ -0.49
USP39-220ENST00000613444 RNF7Q9UBF6 113 aa11.98□□□□□ -0.49
USP39-220ENST00000613444 OR14J1Q9UGF5 321 aa11.98□□□□□ -0.49
USP39-220ENST00000613444 PPP1R3CQ9UQK1 317 aa11.98□□□□□ -0.49
USP39-220ENST00000613444 KLF2Q9Y5W3 355 aaPredicted RBP11.98□□□□□ -0.49
USP39-220ENST00000613444 KIAA2026Q5HYC2 2103 aa11.97□□□□□ -0.49
USP39-220ENST00000613444 RFPL4AA6NLU0 287 aa11.97□□□□□ -0.49
USP39-220ENST00000613444 RFPL4AL1F8VTS6 287 aa11.97□□□□□ -0.49
USP39-220ENST00000613444 PSPNO60542 156 aa11.97□□□□□ -0.49
USP39-220ENST00000613444 CD8AP01732 235 aa11.97□□□□□ -0.49
USP39-220ENST00000613444 DANCRP0C864 163 aa11.97□□□□□ -0.49
USP39-220ENST00000613444 PSG2P11465 335 aa11.97□□□□□ -0.49
USP39-220ENST00000613444 TBPP20226 339 aa11.97□□□□□ -0.49
USP39-220ENST00000613444 FAM201AQ5SY85 155 aa11.97□□□□□ -0.49
USP39-220ENST00000613444 SHEQ5VZ18 495 aa11.97□□□□□ -0.49
USP39-220ENST00000613444 C11orf71Q6IPW1 123 aa11.97□□□□□ -0.49
USP39-220ENST00000613444 FIP1L1Q6UN15 594 aaKnown RBP11.97□□□□□ -0.49
USP39-220ENST00000613444 CD177Q8N6Q3 437 aa11.97□□□□□ -0.49
USP39-220ENST00000613444 OR4K15Q8NH41 348 aa11.97□□□□□ -0.49
USP39-220ENST00000613444 SLC6A7Q99884 636 aa11.97□□□□□ -0.49
USP39-220ENST00000613444 CHST6Q9GZX3 395 aa11.97□□□□□ -0.49
USP39-220ENST00000613444 SAP30LQ9HAJ7 183 aa11.97□□□□□ -0.49
USP39-220ENST00000613444 SEBOXQ9HB31 216 aaPredicted RBP11.97□□□□□ -0.49
USP39-220ENST00000613444 ZNF701Q9NV72 531 aaPredicted RBP11.97□□□□□ -0.49
USP39-220ENST00000613444 NPTNQ9Y639 398 aa11.97□□□□□ -0.49
USP39-220ENST00000613444 IGKV1D-17A0A075B6S4 117 aa11.96□□□□□ -0.49
USP39-220ENST00000613444 A0A0B4J293 547 aa11.96□□□□□ -0.49
USP39-220ENST00000613444 IFNL4K9M1U5 179 aa11.96□□□□□ -0.49
USP39-220ENST00000613444 CYB5R3P00387 301 aaPredicted RBP11.96□□□□□ -0.49
USP39-220ENST00000613444 MEX3BQ6ZN04 569 aaKnown RBP11.96□□□□□ -0.49
USP39-220ENST00000613444 GAPTQ8N292 157 aa11.96□□□□□ -0.49
USP39-220ENST00000613444 OR5T2Q8NGG2 359 aa11.96□□□□□ -0.49
USP39-220ENST00000613444 OR51S1Q8NGJ8 323 aa11.96□□□□□ -0.49
USP39-220ENST00000613444 EGLN1Q9GZT9 426 aa11.96□□□□□ -0.49
USP39-220ENST00000613444 COPZ2Q9P299 210 aa11.96□□□□□ -0.49
USP39-220ENST00000613444 METRNQ9UJH8 293 aa11.96□□□□□ -0.49
USP39-220ENST00000613444 ZNF222Q9UK12 451 aa11.96□□□□□ -0.49
USP39-220ENST00000613444 A6NNC1 897 aa11.96□□□□□ -0.5
USP39-220ENST00000613444 PMP2P02689 132 aa11.96□□□□□ -0.5
USP39-220ENST00000613444 SOD3P08294 240 aa11.96□□□□□ -0.5
USP39-220ENST00000613444 SNRPD2P62316 118 aaKnown RBP11.96□□□□□ -0.5
USP39-220ENST00000613444 PAN3Q58A45 887 aaKnown RBP11.96□□□□□ -0.5
USP39-220ENST00000613444 RNASE10Q5GAN6 216 aaKnown RBP11.96□□□□□ -0.5
USP39-220ENST00000613444 VAX1Q5SQQ9 334 aa11.96□□□□□ -0.5
USP39-220ENST00000613444 C20orf204Q6ZNR8 217 aa11.96□□□□□ -0.5
USP39-220ENST00000613444 PLPPR1Q8TBJ4 325 aa11.96□□□□□ -0.5
USP39-220ENST00000613444 CREB3L1Q96BA8 519 aa11.96□□□□□ -0.5
USP39-220ENST00000613444 DECR2Q9NUI1 292 aa11.96□□□□□ -0.5
USP39-220ENST00000613444 NUDT15Q9NV35 164 aa11.96□□□□□ -0.5
USP39-220ENST00000613444 EDARQ9UNE0 448 aa11.96□□□□□ -0.5
USP39-220ENST00000613444 WIPI2Q9Y4P8 454 aa11.96□□□□□ -0.5
USP39-220ENST00000613444 DSCAML1Q8TD84 2053 aa11.96□□□□□ -0.5
USP39-220ENST00000613444 IGHV3OR15-7A0A075B7D8 119 aa11.95□□□□□ -0.5
USP39-220ENST00000613444 TMEM82A0PJX8 343 aa11.95□□□□□ -0.5
USP39-220ENST00000613444 OR2AT4A6NND4 320 aa11.95□□□□□ -0.5
USP39-220ENST00000613444 HPXP02790 462 aa11.95□□□□□ -0.5
USP39-220ENST00000613444 AMY2AP04746 511 aa11.95□□□□□ -0.5
USP39-220ENST00000613444 AMY2BP19961 511 aa11.95□□□□□ -0.5
USP39-220ENST00000613444 CD80P33681 288 aa11.95□□□□□ -0.5
USP39-220ENST00000613444 PPOXP50336 477 aa11.95□□□□□ -0.5
USP39-220ENST00000613444 RBM39Q14498 530 aaKnown RBP11.95□□□□□ -0.5
USP39-220ENST00000613444 MEF2DQ14814 521 aa11.95□□□□□ -0.5
USP39-220ENST00000613444 ZNF782Q6ZMW2 699 aaPredicted RBP11.95□□□□□ -0.5
USP39-220ENST00000613444 C17orf107Q6ZR85 190 aa11.95□□□□□ -0.5
USP39-220ENST00000613444 Q6ZS49 121 aa11.95□□□□□ -0.5
USP39-220ENST00000613444 BTN2A1Q7KYR7 527 aa11.95□□□□□ -0.5
USP39-220ENST00000613444 DTX2Q86UW9 622 aa11.95□□□□□ -0.5
USP39-220ENST00000613444 BOLLQ8N9W6 283 aaKnown RBP11.95□□□□□ -0.5
USP39-220ENST00000613444 OR5AP2Q8NGF4 316 aa11.95□□□□□ -0.5
USP39-220ENST00000613444 MRPL30Q8TCC3 161 aaKnown RBP11.95□□□□□ -0.5
USP39-220ENST00000613444 MRGPRFQ96AM1 343 aa11.95□□□□□ -0.5
USP39-220ENST00000613444 PPA2Q9H2U2 334 aa11.95□□□□□ -0.5
USP39-220ENST00000613444 TMEM165Q9HC07 324 aa11.95□□□□□ -0.5
USP39-220ENST00000613444 CBLN4Q9NTU7 201 aa11.95□□□□□ -0.5
USP39-220ENST00000613444 SLC2A8Q9NY64 477 aa11.95□□□□□ -0.5
USP39-220ENST00000613444 ETAA1Q9NY74 926 aa11.95□□□□□ -0.5
USP39-220ENST00000613444 NUBP2Q9Y5Y2 271 aa11.95□□□□□ -0.5
USP39-220ENST00000613444 TRBV6-6A0A0A6YYG2 114 aa11.95□□□□□ -0.5
USP39-220ENST00000613444 ZNF737O75373 536 aa11.95□□□□□ -0.5
USP39-220ENST00000613444 NDUFB6O95139 128 aa11.95□□□□□ -0.5
USP39-220ENST00000613444 PRDX2P32119 198 aa11.95□□□□□ -0.5
USP39-220ENST00000613444 MRPS15P82914 257 aaKnown RBP11.95□□□□□ -0.5
USP39-220ENST00000613444 COL10A1Q03692 680 aa11.95□□□□□ -0.5
USP39-220ENST00000613444 SRSF7Q16629 238 aaKnown RBP eCLIP11.95□□□□□ -0.5
USP39-220ENST00000613444 ZNF880Q6PDB4 577 aa11.95□□□□□ -0.5
USP39-220ENST00000613444 OR11L1Q8NGX0 322 aa11.95□□□□□ -0.5
USP39-220ENST00000613444 ANGPTL6Q8NI99 470 aa11.95□□□□□ -0.5
USP39-220ENST00000613444 NEK7Q8TDX7 302 aa11.95□□□□□ -0.5
USP39-220ENST00000613444 SHARPINQ9H0F6 387 aa11.95□□□□□ -0.5
USP39-220ENST00000613444 Q9N2K0 584 aa11.95□□□□□ -0.5
USP39-220ENST00000613444 GLS2Q9UI32 602 aa11.95□□□□□ -0.5
USP39-220ENST00000613444 ANXA10Q9UJ72 324 aa11.95□□□□□ -0.5
USP39-220ENST00000613444 TRAV6A0A075B6T7 132 aa11.94□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms