RNA–Protein interactions for RNA: ENST00000600733.5

SHKBP1-225, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5 BASIC

Gene SHKBP1, Length 2,284 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-225ENST00000600733 SMCO4Q9NRQ5 59 aa17.4■□□□□ 0.38
SHKBP1-225ENST00000600733 C19orf12Q9NSK7 152 aa17.4■□□□□ 0.38
SHKBP1-225ENST00000600733 TMEM265A0A087WTH1 108 aa17.39■□□□□ 0.37
SHKBP1-225ENST00000600733 ZNF98A6NK75 572 aa17.39■□□□□ 0.37
SHKBP1-225ENST00000600733 MRPL33O75394 65 aaKnown RBP17.39■□□□□ 0.37
SHKBP1-225ENST00000600733 CER1O95813 267 aa17.39■□□□□ 0.37
SHKBP1-225ENST00000600733 HAAOP46952 286 aa17.39■□□□□ 0.37
SHKBP1-225ENST00000600733 GPM6AP51674 278 aa17.39■□□□□ 0.37
SHKBP1-225ENST00000600733 ARF1P84077 181 aaKnown RBP17.39■□□□□ 0.37
SHKBP1-225ENST00000600733 DCAF12Q5T6F0 453 aa17.39■□□□□ 0.37
SHKBP1-225ENST00000600733 SHEQ5VZ18 495 aa17.39■□□□□ 0.37
SHKBP1-225ENST00000600733 COLCA1Q6ZS62 124 aa17.39■□□□□ 0.37
SHKBP1-225ENST00000600733 RPS10P5Q9NQ39 176 aa17.39■□□□□ 0.37
SHKBP1-225ENST00000600733 RFNGQ9Y644 331 aa17.39■□□□□ 0.37
SHKBP1-225ENST00000600733 AHCTF1Q8WYP5 2266 aa17.39■□□□□ 0.37
SHKBP1-225ENST00000600733 RPL36A-HNRNPH2H7BZ11 118 aa17.38■□□□□ 0.37
SHKBP1-225ENST00000600733 HLA-HP01893 362 aa17.38■□□□□ 0.37
SHKBP1-225ENST00000600733 FOXG1P55316 489 aaPredicted RBP17.38■□□□□ 0.37
SHKBP1-225ENST00000600733 EWSR1Q01844 656 aaKnown RBP eCLIP17.38■□□□□ 0.37
SHKBP1-225ENST00000600733 GNMTQ14749 295 aa17.38■□□□□ 0.37
SHKBP1-225ENST00000600733 SPIN3Q5JUX0 258 aa17.38■□□□□ 0.37
SHKBP1-225ENST00000600733 PSMF1Q92530 271 aa17.38■□□□□ 0.37
SHKBP1-225ENST00000600733 BOD1Q96IK1 185 aa17.38■□□□□ 0.37
SHKBP1-225ENST00000600733 TMEM222Q9H0R3 208 aa17.38■□□□□ 0.37
SHKBP1-225ENST00000600733 ZNF407Q9C0G0 2248 aa17.38■□□□□ 0.37
SHKBP1-225ENST00000600733 PQLC2LA1A4F0 135 aa17.38■□□□□ 0.37
SHKBP1-225ENST00000600733 FAM24AA6NFZ4 105 aa17.38■□□□□ 0.37
SHKBP1-225ENST00000600733 CELA3AP09093 270 aa17.38■□□□□ 0.37
SHKBP1-225ENST00000600733 SCTP09683 121 aa17.38■□□□□ 0.37
SHKBP1-225ENST00000600733 PRDX4Q13162 271 aa17.38■□□□□ 0.37
SHKBP1-225ENST00000600733 TBC1D26Q86UD7 250 aa17.38■□□□□ 0.37
SHKBP1-225ENST00000600733 C20orf24Q9BUV8 137 aa17.38■□□□□ 0.37
SHKBP1-225ENST00000600733 PRO3102Q9H379 93 aa17.38■□□□□ 0.37
SHKBP1-225ENST00000600733 UCP2P55851 309 aa17.37■□□□□ 0.37
SHKBP1-225ENST00000600733 CLINT1Q14677 625 aa17.37■□□□□ 0.37
SHKBP1-225ENST00000600733 AWAT1Q58HT5 328 aa17.37■□□□□ 0.37
SHKBP1-225ENST00000600733 TMEM182Q6ZP80 229 aaPredicted RBP17.37■□□□□ 0.37
SHKBP1-225ENST00000600733 DPPA2Q7Z7J5 298 aa17.37■□□□□ 0.37
SHKBP1-225ENST00000600733 UBALD2Q8IYN6 164 aa17.37■□□□□ 0.37
SHKBP1-225ENST00000600733 SPACA1Q9HBV2 294 aa17.37■□□□□ 0.37
SHKBP1-225ENST00000600733 PLSCR2Q9NRY7 297 aa17.37■□□□□ 0.37
SHKBP1-225ENST00000600733 LRFN1Q9P244 771 aa17.37■□□□□ 0.37
SHKBP1-225ENST00000600733 ZDBF2Q9HCK1 2354 aa17.37■□□□□ 0.37
SHKBP1-225ENST00000600733 C5orf49A4QMS7 147 aa17.37■□□□□ 0.37
SHKBP1-225ENST00000600733 ZNF503-AS2A6NEH8 195 aa17.37■□□□□ 0.37
SHKBP1-225ENST00000600733 TRDCB7Z8K6 153 aa17.37■□□□□ 0.37
SHKBP1-225ENST00000600733 SERPINA7P05543 415 aa17.37■□□□□ 0.37
SHKBP1-225ENST00000600733 SNRNP70P08621 437 aaKnown RBP17.37■□□□□ 0.37
SHKBP1-225ENST00000600733 SPINK2P20155 84 aa17.37■□□□□ 0.37
SHKBP1-225ENST00000600733 POLR2GP62487 172 aaKnown RBP eCLIP17.37■□□□□ 0.37
SHKBP1-225ENST00000600733 PEAR1Q5VY43 1037 aaPredicted RBP17.37■□□□□ 0.37
SHKBP1-225ENST00000600733 ZNF818PQ6ZRF7 136 aa17.37■□□□□ 0.37
SHKBP1-225ENST00000600733 TMEM45BQ96B21 275 aa17.37■□□□□ 0.37
SHKBP1-225ENST00000600733 IP6K3Q96PC2 410 aa17.37■□□□□ 0.37
SHKBP1-225ENST00000600733 REPIN1Q9BWE0 567 aaKnown RBP17.37■□□□□ 0.37
SHKBP1-225ENST00000600733 UBE2J1Q9Y385 318 aaPredicted RBP17.37■□□□□ 0.37
SHKBP1-225ENST00000600733 B4E171 279 aa17.36■□□□□ 0.37
SHKBP1-225ENST00000600733 OMGP23515 440 aa17.36■□□□□ 0.37
SHKBP1-225ENST00000600733 PMELP40967 661 aa17.36■□□□□ 0.37
SHKBP1-225ENST00000600733 TSPAN7P41732 249 aa17.36■□□□□ 0.37
SHKBP1-225ENST00000600733 HERPUD1Q15011 391 aa17.36■□□□□ 0.37
SHKBP1-225ENST00000600733 TGIF1Q15583 401 aa17.36■□□□□ 0.37
SHKBP1-225ENST00000600733 TSC22D1Q15714 1073 aa17.36■□□□□ 0.37
SHKBP1-225ENST00000600733 OR2C3Q8N628 320 aa17.36■□□□□ 0.37
SHKBP1-225ENST00000600733 Q8NFD4 153 aa17.36■□□□□ 0.37
SHKBP1-225ENST00000600733 C12orf57Q99622 126 aa17.36■□□□□ 0.37
SHKBP1-225ENST00000600733 PRRG4Q9BZD6 226 aa17.36■□□□□ 0.37
SHKBP1-225ENST00000600733 MAGT1Q9H0U3 335 aa17.36■□□□□ 0.37
SHKBP1-225ENST00000600733 Q9N2K0 584 aa17.36■□□□□ 0.37
SHKBP1-225ENST00000600733 MRPS18CQ9Y3D5 142 aaKnown RBP17.36■□□□□ 0.37
SHKBP1-225ENST00000600733 FBXO7Q9Y3I1 522 aa17.36■□□□□ 0.37
SHKBP1-225ENST00000600733 IGKV1D-13A0A0B4J2D9 117 aa17.36■□□□□ 0.37
SHKBP1-225ENST00000600733 IGKV1-13P0DP09 117 aa17.36■□□□□ 0.37
SHKBP1-225ENST00000600733 DAOP14920 347 aa17.36■□□□□ 0.37
SHKBP1-225ENST00000600733 PPP1CCP36873 323 aaKnown RBP17.36■□□□□ 0.37
SHKBP1-225ENST00000600733 HABP2Q14520 560 aaPredicted RBP17.36■□□□□ 0.37
SHKBP1-225ENST00000600733 SSPNQ14714 243 aa17.36■□□□□ 0.37
SHKBP1-225ENST00000600733 C6orf15Q6UXA7 325 aaPredicted RBP17.36■□□□□ 0.37
SHKBP1-225ENST00000600733 ZNF695Q8IW36 515 aa17.36■□□□□ 0.37
SHKBP1-225ENST00000600733 TUSC5Q8IXB3 177 aa17.36■□□□□ 0.37
SHKBP1-225ENST00000600733 GAPTQ8N292 157 aa17.36■□□□□ 0.37
SHKBP1-225ENST00000600733 COMMD1Q8N668 190 aa17.36■□□□□ 0.37
SHKBP1-225ENST00000600733 FAM213BQ8TBF2 198 aa17.36■□□□□ 0.37
SHKBP1-225ENST00000600733 HES7Q9BYE0 225 aa17.36■□□□□ 0.37
SHKBP1-225ENST00000600733 C11orf1Q9H5F2 150 aa17.36■□□□□ 0.37
SHKBP1-225ENST00000600733 RNF122Q9H9V4 155 aa17.36■□□□□ 0.37
SHKBP1-225ENST00000600733 CALHM2Q9HA72 323 aa17.36■□□□□ 0.37
SHKBP1-225ENST00000600733 PRDM6Q9NQX0 595 aa17.36■□□□□ 0.37
SHKBP1-225ENST00000600733 LOXL2Q9Y4K0 774 aa17.36■□□□□ 0.37
SHKBP1-225ENST00000600733 DOCK7Q96N67 2140 aa17.35■□□□□ 0.37
SHKBP1-225ENST00000600733 DNAJC13O75165 2243 aa17.35■□□□□ 0.37
SHKBP1-225ENST00000600733 IGSF23A1L1A6 192 aa17.35■□□□□ 0.37
SHKBP1-225ENST00000600733 CDS2O95674 445 aa17.35■□□□□ 0.37
SHKBP1-225ENST00000600733 TK1P04183 234 aa17.35■□□□□ 0.37
SHKBP1-225ENST00000600733 NKX2-1P43699 371 aaPredicted RBP17.35■□□□□ 0.37
SHKBP1-225ENST00000600733 HMGN3Q15651 99 aa17.35■□□□□ 0.37
SHKBP1-225ENST00000600733 C15orf54Q8N8G6 183 aa17.35■□□□□ 0.37
SHKBP1-225ENST00000600733 TMEM105Q8N8V8 129 aa17.35■□□□□ 0.37
SHKBP1-225ENST00000600733 ISOC2Q96AB3 205 aa17.35■□□□□ 0.37
SHKBP1-225ENST00000600733 THOC3Q96J01 351 aaKnown RBP17.35■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms