RNA–Protein interactions for RNA: ENST00000597995.1

TRIM28-212, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 702 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-212ENST00000597995 ZNF146Q15072 292 aa10.01□□□□□ -0.81
TRIM28-212ENST00000597995 ZSCAN26Q16670 478 aa10.01□□□□□ -0.81
TRIM28-212ENST00000597995 TMEM95Q3KNT9 176 aa10.01□□□□□ -0.81
TRIM28-212ENST00000597995 TCTEX1D4Q5JR98 221 aa10.01□□□□□ -0.81
TRIM28-212ENST00000597995 LPCAT4Q643R3 524 aa10.01□□□□□ -0.81
TRIM28-212ENST00000597995 XAF1Q6GPH4 301 aa10.01□□□□□ -0.81
TRIM28-212ENST00000597995 LHFPL2Q6ZUX7 228 aa10.01□□□□□ -0.81
TRIM28-212ENST00000597995 FAM58AQ8N1B3 248 aa10.01□□□□□ -0.81
TRIM28-212ENST00000597995 ZNF676Q8N7Q3 588 aa10.01□□□□□ -0.81
TRIM28-212ENST00000597995 TPRX1Q8N7U7 411 aa10.01□□□□□ -0.81
TRIM28-212ENST00000597995 OR13C9Q8NGT0 318 aa10.01□□□□□ -0.81
TRIM28-212ENST00000597995 NDNFQ8TB73 568 aa10.01□□□□□ -0.81
TRIM28-212ENST00000597995 RGP1Q92546 391 aaPredicted RBP10.01□□□□□ -0.81
TRIM28-212ENST00000597995 SPSB1Q96BD6 273 aa10.01□□□□□ -0.81
TRIM28-212ENST00000597995 OPALINQ96PE5 141 aa10.01□□□□□ -0.81
TRIM28-212ENST00000597995 LIN7BQ9HAP6 207 aa10.01□□□□□ -0.81
TRIM28-212ENST00000597995 HMG20AQ9NP66 347 aa10.01□□□□□ -0.81
TRIM28-212ENST00000597995 FGF20Q9NP95 211 aaPredicted RBP10.01□□□□□ -0.81
TRIM28-212ENST00000597995 INPP5EQ9NRR6 644 aa10.01□□□□□ -0.81
TRIM28-212ENST00000597995 RPL36Q9Y3U8 105 aaKnown RBP10.01□□□□□ -0.81
TRIM28-212ENST00000597995 LINC00312Q9Y6C7 94 aa10.01□□□□□ -0.81
TRIM28-212ENST00000597995 KDM4BO94953 1096 aa10□□□□□ -0.81
TRIM28-212ENST00000597995 JUNBP17275 347 aaPredicted RBP10□□□□□ -0.81
TRIM28-212ENST00000597995 HTR1DP28221 377 aa10□□□□□ -0.81
TRIM28-212ENST00000597995 ETV1P50549 477 aa10□□□□□ -0.81
TRIM28-212ENST00000597995 SNU13P55769 128 aaKnown RBP10□□□□□ -0.81
TRIM28-212ENST00000597995 ZP1P60852 638 aa10□□□□□ -0.81
TRIM28-212ENST00000597995 LRRC36Q1X8D7 754 aa10□□□□□ -0.81
TRIM28-212ENST00000597995 DEFB121Q5J5C9 76 aa10□□□□□ -0.81
TRIM28-212ENST00000597995 ZNF691Q5VV52 312 aa10□□□□□ -0.81
TRIM28-212ENST00000597995 Q8IYB0 196 aa10□□□□□ -0.81
TRIM28-212ENST00000597995 OR5D18Q8NGL1 313 aa10□□□□□ -0.81
TRIM28-212ENST00000597995 CNIH3Q8TBE1 160 aa10□□□□□ -0.81
TRIM28-212ENST00000597995 RDH12Q96NR8 316 aa10□□□□□ -0.81
TRIM28-212ENST00000597995 JAM3Q9BX67 310 aa10□□□□□ -0.81
TRIM28-212ENST00000597995 CLEC7AQ9BXN2 247 aa10□□□□□ -0.81
TRIM28-212ENST00000597995 CHST6Q9GZX3 395 aa10□□□□□ -0.81
TRIM28-212ENST00000597995 TMEM133Q9H2Q1 129 aa10□□□□□ -0.81
TRIM28-212ENST00000597995 ZCCHC4Q9H5U6 513 aa10□□□□□ -0.81
TRIM28-212ENST00000597995 SIRT4Q9Y6E7 314 aaPredicted RBP10□□□□□ -0.81
TRIM28-212ENST00000597995 TMEM212A6NML5 194 aa9.99□□□□□ -0.81
TRIM28-212ENST00000597995 MMP23AO75900 390 aa9.99□□□□□ -0.81
TRIM28-212ENST00000597995 PRKACAP17612 351 aa9.99□□□□□ -0.81
TRIM28-212ENST00000597995 PEX2P28328 305 aa9.99□□□□□ -0.81
TRIM28-212ENST00000597995 BRS3P32247 399 aa9.99□□□□□ -0.81
TRIM28-212ENST00000597995 OR3A1P47881 315 aa9.99□□□□□ -0.81
TRIM28-212ENST00000597995 ARHGDIBP52566 201 aa9.99□□□□□ -0.81
TRIM28-212ENST00000597995 ADARB1P78563 741 aaKnown RBP9.99□□□□□ -0.81
TRIM28-212ENST00000597995 EGFEM1PQ0D2K5 195 aa9.99□□□□□ -0.81
TRIM28-212ENST00000597995 EDDM3AQ14507 147 aa9.99□□□□□ -0.81
TRIM28-212ENST00000597995 KLHL22Q53GT1 634 aa9.99□□□□□ -0.81
TRIM28-212ENST00000597995 OR2G6Q5TZ20 316 aa9.99□□□□□ -0.81
TRIM28-212ENST00000597995 ZNF529Q6P280 563 aa9.99□□□□□ -0.81
TRIM28-212ENST00000597995 PARP16Q8N5Y8 322 aa9.99□□□□□ -0.81
TRIM28-212ENST00000597995 OR4X2Q8NGF9 303 aa9.99□□□□□ -0.81
TRIM28-212ENST00000597995 OR5AK2Q8NH90 309 aa9.99□□□□□ -0.81
TRIM28-212ENST00000597995 CAPSLQ8WWF8 208 aa9.99□□□□□ -0.81
TRIM28-212ENST00000597995 MYDGFQ969H8 173 aa9.99□□□□□ -0.81
TRIM28-212ENST00000597995 MRPL48Q96GC5 212 aaKnown RBP9.99□□□□□ -0.81
TRIM28-212ENST00000597995 MYCBPQ99417 103 aaPredicted RBP9.99□□□□□ -0.81
TRIM28-212ENST00000597995 GPR61Q9BZJ8 451 aa9.99□□□□□ -0.81
TRIM28-212ENST00000597995 DPM3Q9P2X0 92 aa9.99□□□□□ -0.81
TRIM28-212ENST00000597995 GSTK1Q9Y2Q3 226 aa9.99□□□□□ -0.81
TRIM28-212ENST00000597995 WI2-2373I1.2A0A1W2PRP0 233 aa9.98□□□□□ -0.81
TRIM28-212ENST00000597995 OR2H2O95918 312 aa9.98□□□□□ -0.81
TRIM28-212ENST00000597995 LALBAP00709 142 aa9.98□□□□□ -0.81
TRIM28-212ENST00000597995 GABRR1P24046 479 aa9.98□□□□□ -0.81
TRIM28-212ENST00000597995 LMO1P25800 156 aa9.98□□□□□ -0.81
TRIM28-212ENST00000597995 ERP29P30040 261 aaKnown RBP9.98□□□□□ -0.81
TRIM28-212ENST00000597995 GBX2P52951 348 aaPredicted RBP9.98□□□□□ -0.81
TRIM28-212ENST00000597995 KRTAP10-11P60412 298 aa9.98□□□□□ -0.81
TRIM28-212ENST00000597995 KISS1Q15726 138 aa9.98□□□□□ -0.81
TRIM28-212ENST00000597995 GRK1Q15835 563 aa9.98□□□□□ -0.81
TRIM28-212ENST00000597995 SPIN3Q5JUX0 258 aa9.98□□□□□ -0.81
TRIM28-212ENST00000597995 OR52W1Q6IF63 320 aa9.98□□□□□ -0.81
TRIM28-212ENST00000597995 LAIR2Q6ISS4 152 aa9.98□□□□□ -0.81
TRIM28-212ENST00000597995 C11orf87Q6NUJ2 197 aa9.98□□□□□ -0.81
TRIM28-212ENST00000597995 Q6P435 159 aa9.98□□□□□ -0.81
TRIM28-212ENST00000597995 RTN4RL2Q86UN3 420 aa9.98□□□□□ -0.81
TRIM28-212ENST00000597995 SERPINA12Q8IW75 414 aa9.98□□□□□ -0.81
TRIM28-212ENST00000597995 ZNF555Q8NEP9 628 aa9.98□□□□□ -0.81
TRIM28-212ENST00000597995 OR51A2Q8NGJ7 313 aa9.98□□□□□ -0.81
TRIM28-212ENST00000597995 OR4P4Q8NGL7 312 aa9.98□□□□□ -0.81
TRIM28-212ENST00000597995 ZNF596Q8TC21 504 aa9.98□□□□□ -0.81
TRIM28-212ENST00000597995 STMN2Q93045 179 aa9.98□□□□□ -0.81
TRIM28-212ENST00000597995 RBM14Q96PK6 669 aaKnown RBP9.98□□□□□ -0.81
TRIM28-212ENST00000597995 COMMD4Q9H0A8 199 aa9.98□□□□□ -0.81
TRIM28-212ENST00000597995 CLEC2DQ9UHP7 191 aa9.98□□□□□ -0.81
TRIM28-212ENST00000597995 UBE2J1Q9Y385 318 aaPredicted RBP9.98□□□□□ -0.81
TRIM28-212ENST00000597995 TENM3Q9P273 2699 aa9.98□□□□□ -0.81
TRIM28-212ENST00000597995 KIAA2026Q5HYC2 2103 aa9.97□□□□□ -0.81
TRIM28-212ENST00000597995 ANKRD65E5RJM6 399 aa9.97□□□□□ -0.81
TRIM28-212ENST00000597995 SIRPB1O00241 398 aa9.97□□□□□ -0.81
TRIM28-212ENST00000597995 MGST3O14880 152 aa9.97□□□□□ -0.81
TRIM28-212ENST00000597995 SULT1B1O43704 296 aa9.97□□□□□ -0.81
TRIM28-212ENST00000597995 OR2F2O95006 317 aa9.97□□□□□ -0.81
TRIM28-212ENST00000597995 CYB5AP00167 134 aa9.97□□□□□ -0.81
TRIM28-212ENST00000597995 LPLP06858 475 aa9.97□□□□□ -0.81
TRIM28-212ENST00000597995 CCDC159P0C7I6 412 aa9.97□□□□□ -0.81
TRIM28-212ENST00000597995 DCKP27707 260 aa9.97□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms