RNA–Protein interactions for RNA: ENST00000593074.5

CLIP3-206, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 2 BASIC

Gene CLIP3, Length 2,080 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-206ENST00000593074 GGNBP1Q5YKI7 109 aa16.81■□□□□ 0.28
CLIP3-206ENST00000593074 OR2A2Q6IF42 318 aa16.81■□□□□ 0.28
CLIP3-206ENST00000593074 SNIP1Q8TAD8 396 aaKnown RBP16.81■□□□□ 0.28
CLIP3-206ENST00000593074 MRPL24Q96A35 216 aaKnown RBP16.81■□□□□ 0.28
CLIP3-206ENST00000593074 C1QTNF6Q9BXI9 259 aa16.81■□□□□ 0.28
CLIP3-206ENST00000593074 GSKIPQ9P0R6 139 aa16.81■□□□□ 0.28
CLIP3-206ENST00000593074 A8MXK9 166 aa16.8■□□□□ 0.28
CLIP3-206ENST00000593074 J3QT63 122 aa16.8■□□□□ 0.28
CLIP3-206ENST00000593074 IFNA21P01568 189 aa16.8■□□□□ 0.28
CLIP3-206ENST00000593074 FGF2P09038 288 aa16.8■□□□□ 0.28
CLIP3-206ENST00000593074 IL32P24001 234 aa16.8■□□□□ 0.28
CLIP3-206ENST00000593074 PPP1CBP62140 327 aa16.8■□□□□ 0.28
CLIP3-206ENST00000593074 ACSF3Q4G176 576 aaPredicted RBP16.8■□□□□ 0.28
CLIP3-206ENST00000593074 INO80CQ6PI98 192 aaPredicted RBP16.8■□□□□ 0.28
CLIP3-206ENST00000593074 HSD17B13Q7Z5P4 300 aaPredicted RBP16.8■□□□□ 0.28
CLIP3-206ENST00000593074 EIF4E3Q8N5X7 224 aaKnown RBP16.8■□□□□ 0.28
CLIP3-206ENST00000593074 LRRC20Q8TCA0 184 aa16.8■□□□□ 0.28
CLIP3-206ENST00000593074 SHARPINQ9H0F6 387 aa16.8■□□□□ 0.28
CLIP3-206ENST00000593074 RHOFQ9HBH0 211 aa16.8■□□□□ 0.28
CLIP3-206ENST00000593074 CDH20Q9HBT6 801 aa16.8■□□□□ 0.28
CLIP3-206ENST00000593074 SESN1Q9Y6P5 492 aa16.8■□□□□ 0.28
CLIP3-206ENST00000593074 ASPMQ8IZT6 3477 aa16.79■□□□□ 0.28
CLIP3-206ENST00000593074 CACNA1GO43497 2377 aa16.79■□□□□ 0.28
CLIP3-206ENST00000593074 A0A1B0GW55 424 aa16.79■□□□□ 0.28
CLIP3-206ENST00000593074 A0A1W2PR80 420 aa16.79■□□□□ 0.28
CLIP3-206ENST00000593074 DUX4L2P0CJ85 424 aa16.79■□□□□ 0.28
CLIP3-206ENST00000593074 DUX4L3P0CJ86 424 aa16.79■□□□□ 0.28
CLIP3-206ENST00000593074 DUX4L4P0CJ87 422 aa16.79■□□□□ 0.28
CLIP3-206ENST00000593074 DUX4L5P0CJ88 424 aa16.79■□□□□ 0.28
CLIP3-206ENST00000593074 DUX4L6P0CJ89 424 aa16.79■□□□□ 0.28
CLIP3-206ENST00000593074 DUX4L7P0CJ90 424 aa16.79■□□□□ 0.28
CLIP3-206ENST00000593074 HOXB1P14653 301 aaPredicted RBP16.79■□□□□ 0.28
CLIP3-206ENST00000593074 ZP3P21754 424 aa16.79■□□□□ 0.28
CLIP3-206ENST00000593074 NUP62P37198 522 aaPredicted RBP16.79■□□□□ 0.28
CLIP3-206ENST00000593074 PHLDA2Q53GA4 152 aa16.79■□□□□ 0.28
CLIP3-206ENST00000593074 PAN3Q58A45 887 aaKnown RBP16.79■□□□□ 0.28
CLIP3-206ENST00000593074 UNQ6126/PRO20091Q6UXV3 157 aa16.79■□□□□ 0.28
CLIP3-206ENST00000593074 Q6ZS92 163 aa16.79■□□□□ 0.28
CLIP3-206ENST00000593074 ZNF488Q96MN9 340 aa16.79■□□□□ 0.28
CLIP3-206ENST00000593074 SYT3Q9BQG1 590 aa16.79■□□□□ 0.28
CLIP3-206ENST00000593074 RTL8AQ9BWD3 113 aa16.79■□□□□ 0.28
CLIP3-206ENST00000593074 IFT22Q9H7X7 185 aa16.79■□□□□ 0.28
CLIP3-206ENST00000593074 BARX1Q9HBU1 254 aaPredicted RBP16.79■□□□□ 0.28
CLIP3-206ENST00000593074 CYTL1Q9NRR1 136 aa16.79■□□□□ 0.28
CLIP3-206ENST00000593074 DUX4Q9UBX2 424 aa16.79■□□□□ 0.28
CLIP3-206ENST00000593074 SHANK1Q9Y566 2161 aa16.79■□□□□ 0.28
CLIP3-206ENST00000593074 S100A10P60903 97 aa16.79■□□□□ 0.28
CLIP3-206ENST00000593074 ZNF585AQ6P3V2 769 aa16.79■□□□□ 0.28
CLIP3-206ENST00000593074 FAM58AQ8N1B3 248 aa16.79■□□□□ 0.28
CLIP3-206ENST00000593074 CCDC71LQ8N9Z2 235 aa16.79■□□□□ 0.28
CLIP3-206ENST00000593074 SUMF2Q8NBJ7 301 aa16.79■□□□□ 0.28
CLIP3-206ENST00000593074 C1orf162Q8NEQ5 155 aaPredicted RBP16.79■□□□□ 0.28
CLIP3-206ENST00000593074 OR5T2Q8NGG2 359 aa16.79■□□□□ 0.28
CLIP3-206ENST00000593074 OR2J1Q9GZK6 312 aa16.79■□□□□ 0.28
CLIP3-206ENST00000593074 GVINP1Q7Z2Y8 2422 aa16.78■□□□□ 0.28
CLIP3-206ENST00000593074 ZFHX4Q86UP3 3567 aa16.78■□□□□ 0.28
CLIP3-206ENST00000593074 TRBV6-6A0A0A6YYG2 114 aa16.78■□□□□ 0.28
CLIP3-206ENST00000593074 KIR2DS1A0A191URI9 304 aa16.78■□□□□ 0.28
CLIP3-206ENST00000593074 CRYZL1O95825 349 aa16.78■□□□□ 0.28
CLIP3-206ENST00000593074 GLAP06280 429 aa16.78■□□□□ 0.28
CLIP3-206ENST00000593074 TPT1P13693 172 aaKnown RBP16.78■□□□□ 0.28
CLIP3-206ENST00000593074 DUSP1P28562 367 aa16.78■□□□□ 0.28
CLIP3-206ENST00000593074 EIF2S3P41091 472 aaKnown RBP16.78■□□□□ 0.28
CLIP3-206ENST00000593074 KIR2DS4P43632 304 aa16.78■□□□□ 0.28
CLIP3-206ENST00000593074 KIR2DS1Q14954 304 aa16.78■□□□□ 0.28
CLIP3-206ENST00000593074 FAM76BQ5HYJ3 339 aa16.78■□□□□ 0.28
CLIP3-206ENST00000593074 VWA1Q6PCB0 445 aa16.78■□□□□ 0.28
CLIP3-206ENST00000593074 LIAT1Q6ZQX7 453 aa16.78■□□□□ 0.28
CLIP3-206ENST00000593074 FAM219AQ8IW50 185 aa16.78■□□□□ 0.28
CLIP3-206ENST00000593074 CNTNAP3BQ96NU0 1288 aa16.78■□□□□ 0.28
CLIP3-206ENST00000593074 CNTNAP3Q9BZ76 1288 aa16.78■□□□□ 0.28
CLIP3-206ENST00000593074 RIMS4Q9H426 269 aaPredicted RBP16.78■□□□□ 0.28
CLIP3-206ENST00000593074 HSPB6O14558 160 aa16.77■□□□□ 0.28
CLIP3-206ENST00000593074 RAC2P15153 192 aa16.77■□□□□ 0.28
CLIP3-206ENST00000593074 HERPUD1Q15011 391 aa16.77■□□□□ 0.28
CLIP3-206ENST00000593074 TSC22D1Q15714 1073 aa16.77■□□□□ 0.28
CLIP3-206ENST00000593074 SP6Q3SY56 376 aa16.77■□□□□ 0.28
CLIP3-206ENST00000593074 WDR86Q86TI4 376 aa16.77■□□□□ 0.28
CLIP3-206ENST00000593074 BVESQ8NE79 360 aa16.77■□□□□ 0.28
CLIP3-206ENST00000593074 OR11L1Q8NGX0 322 aa16.77■□□□□ 0.28
CLIP3-206ENST00000593074 GLYATL2Q8WU03 294 aa16.77■□□□□ 0.28
CLIP3-206ENST00000593074 MSI2Q96DH6 328 aaKnown RBP16.77■□□□□ 0.28
CLIP3-206ENST00000593074 C18orf12Q96KH6 178 aa16.77■□□□□ 0.28
CLIP3-206ENST00000593074 ATP23Q9Y6H3 246 aa16.77■□□□□ 0.28
CLIP3-206ENST00000593074 TRAV24A0A0B4J272 114 aa16.77■□□□□ 0.27
CLIP3-206ENST00000593074 LRP5LA4QPB2 252 aa16.77■□□□□ 0.27
CLIP3-206ENST00000593074 TRDCB7Z8K6 153 aa16.77■□□□□ 0.27
CLIP3-206ENST00000593074 DEDDO75618 318 aa16.77■□□□□ 0.27
CLIP3-206ENST00000593074 RHBDL1O75783 438 aa16.77■□□□□ 0.27
CLIP3-206ENST00000593074 TK1P04183 234 aa16.77■□□□□ 0.27
CLIP3-206ENST00000593074 SPINK2P20155 84 aa16.77■□□□□ 0.27
CLIP3-206ENST00000593074 FAM185AQ8N0U4 392 aa16.77■□□□□ 0.27
CLIP3-206ENST00000593074 C17orf78Q8N4C9 275 aa16.77■□□□□ 0.27
CLIP3-206ENST00000593074 NEK7Q8TDX7 302 aa16.77■□□□□ 0.27
CLIP3-206ENST00000593074 CCDC120Q96HB5 630 aa16.77■□□□□ 0.27
CLIP3-206ENST00000593074 SLC5A7Q9GZV3 580 aa16.77■□□□□ 0.27
CLIP3-206ENST00000593074 DNTTIP1Q9H147 329 aa16.77■□□□□ 0.27
CLIP3-206ENST00000593074 PLSCR4Q9NRQ2 329 aa16.77■□□□□ 0.27
CLIP3-206ENST00000593074 NUP50Q9UKX7 468 aa16.77■□□□□ 0.27
CLIP3-206ENST00000593074 IQCF6A8MYZ5 107 aa16.76■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 66.7 ms