RNA–Protein interactions for RNA: ENST00000580751.5

SS18-216, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 547 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-216ENST00000580751 WNT2P09544 360 aa12.93□□□□□ -0.34
SS18-216ENST00000580751 SERPINA2P20848 420 aa12.93□□□□□ -0.34
SS18-216ENST00000580751 EFNB2P52799 333 aa12.93□□□□□ -0.34
SS18-216ENST00000580751 SPIN3Q5JUX0 258 aa12.93□□□□□ -0.34
SS18-216ENST00000580751 ATPAF1Q5TC12 328 aaPredicted RBP12.93□□□□□ -0.34
SS18-216ENST00000580751 HACD4Q5VWC8 232 aa12.93□□□□□ -0.34
SS18-216ENST00000580751 CYB5R2Q6BCY4 276 aa12.93□□□□□ -0.34
SS18-216ENST00000580751 LINC01356Q8N9X3 169 aa12.93□□□□□ -0.34
SS18-216ENST00000580751 ANGPTL6Q8NI99 470 aa12.93□□□□□ -0.34
SS18-216ENST00000580751 EMG1Q92979 244 aaKnown RBP12.93□□□□□ -0.34
SS18-216ENST00000580751 SELENOIQ9C0D9 397 aa12.93□□□□□ -0.34
SS18-216ENST00000580751 IFT22Q9H7X7 185 aa12.93□□□□□ -0.34
SS18-216ENST00000580751 HSF4Q9ULV5 492 aa12.93□□□□□ -0.34
SS18-216ENST00000580751 NSD1Q96L73 2696 aaPredicted RBP12.93□□□□□ -0.34
SS18-216ENST00000580751 FAM157AC9JC47 383 aa12.92□□□□□ -0.34
SS18-216ENST00000580751 SULT1C2O00338 296 aa12.92□□□□□ -0.34
SS18-216ENST00000580751 TNFRSF13BO14836 293 aaPredicted RBP12.92□□□□□ -0.34
SS18-216ENST00000580751 FOXH1O75593 365 aa12.92□□□□□ -0.34
SS18-216ENST00000580751 MSMBP08118 114 aa12.92□□□□□ -0.34
SS18-216ENST00000580751 MELTFP08582 738 aa12.92□□□□□ -0.34
SS18-216ENST00000580751 GSTP1P09211 210 aaKnown RBP12.92□□□□□ -0.34
SS18-216ENST00000580751 PSG2P11465 335 aa12.92□□□□□ -0.34
SS18-216ENST00000580751 BCL3P20749 454 aa12.92□□□□□ -0.34
SS18-216ENST00000580751 CDK2P24941 298 aa12.92□□□□□ -0.34
SS18-216ENST00000580751 NPBWR2P48146 333 aa12.92□□□□□ -0.34
SS18-216ENST00000580751 NPY4RP50391 375 aa12.92□□□□□ -0.34
SS18-216ENST00000580751 RBM11P57052 281 aaKnown RBP12.92□□□□□ -0.34
SS18-216ENST00000580751 IL18Q14116 193 aa12.92□□□□□ -0.34
SS18-216ENST00000580751 OR10K2Q6IF99 312 aa12.92□□□□□ -0.34
SS18-216ENST00000580751 LYPD2Q6UXB3 125 aa12.92□□□□□ -0.34
SS18-216ENST00000580751 FAM58AQ8N1B3 248 aa12.92□□□□□ -0.34
SS18-216ENST00000580751 BATF2Q8N1L9 274 aa12.92□□□□□ -0.34
SS18-216ENST00000580751 OR5T2Q8NGG2 359 aa12.92□□□□□ -0.34
SS18-216ENST00000580751 OR10R2Q8NGX6 335 aa12.92□□□□□ -0.34
SS18-216ENST00000580751 MSI2Q96DH6 328 aaKnown RBP12.92□□□□□ -0.34
SS18-216ENST00000580751 MED30Q96HR3 178 aa12.92□□□□□ -0.34
SS18-216ENST00000580751 NKX3-1Q99801 234 aaPredicted RBP12.92□□□□□ -0.34
SS18-216ENST00000580751 SSBP3Q9BWW4 388 aaPredicted RBP12.92□□□□□ -0.34
SS18-216ENST00000580751 SRRQ9GZT4 340 aa12.92□□□□□ -0.34
SS18-216ENST00000580751 SCPEP1Q9HB40 452 aa12.92□□□□□ -0.34
SS18-216ENST00000580751 RBFOX1Q9NWB1 397 aaKnown RBP12.92□□□□□ -0.34
SS18-216ENST00000580751 CLN8Q9UBY8 286 aa12.92□□□□□ -0.34
SS18-216ENST00000580751 GLS2Q9UI32 602 aa12.92□□□□□ -0.34
SS18-216ENST00000580751 ZNF222Q9UK12 451 aa12.92□□□□□ -0.34
SS18-216ENST00000580751 ST3GAL6Q9Y274 331 aa12.92□□□□□ -0.34
SS18-216ENST00000580751 HIVEP2P31629 2446 aa12.91□□□□□ -0.34
SS18-216ENST00000580751 YLPM1P49750 1951 aaKnown RBP12.91□□□□□ -0.34
SS18-216ENST00000580751 IGKV1D-17A0A075B6S4 117 aa12.91□□□□□ -0.34
SS18-216ENST00000580751 RFPL4AA6NLU0 287 aa12.91□□□□□ -0.34
SS18-216ENST00000580751 FOXI3A8MTJ6 420 aaPredicted RBP12.91□□□□□ -0.34
SS18-216ENST00000580751 A8MXK9 166 aa12.91□□□□□ -0.34
SS18-216ENST00000580751 RFPL4AL1F8VTS6 287 aa12.91□□□□□ -0.34
SS18-216ENST00000580751 F8VVB4 439 aa12.91□□□□□ -0.34
SS18-216ENST00000580751 F8VWA3 439 aa12.91□□□□□ -0.34
SS18-216ENST00000580751 GSTZ1O43708 216 aaPredicted RBP12.91□□□□□ -0.34
SS18-216ENST00000580751 CD5LO43866 347 aa12.91□□□□□ -0.34
SS18-216ENST00000580751 HLA-DQB1P01920 261 aa12.91□□□□□ -0.34
SS18-216ENST00000580751 ZNF16P17020 682 aaPredicted RBP12.91□□□□□ -0.34
SS18-216ENST00000580751 GABRA2P47869 451 aa12.91□□□□□ -0.34
SS18-216ENST00000580751 TAS2R20P59543 309 aa12.91□□□□□ -0.34
SS18-216ENST00000580751 GNB2P62879 340 aa12.91□□□□□ -0.34
SS18-216ENST00000580751 IL13RA1P78552 427 aa12.91□□□□□ -0.34
SS18-216ENST00000580751 KRTAP1-1Q07627 177 aa12.91□□□□□ -0.34
SS18-216ENST00000580751 ZNF146Q15072 292 aa12.91□□□□□ -0.34
SS18-216ENST00000580751 ZNF79Q15937 498 aa12.91□□□□□ -0.34
SS18-216ENST00000580751 PNLIPRP3Q17RR3 467 aa12.91□□□□□ -0.34
SS18-216ENST00000580751 CLEC9AQ6UXN8 241 aa12.91□□□□□ -0.34
SS18-216ENST00000580751 ZNF788Q6ZQV5 615 aa12.91□□□□□ -0.34
SS18-216ENST00000580751 RAB3CQ96E17 227 aa12.91□□□□□ -0.34
SS18-216ENST00000580751 SDSLQ96GA7 329 aa12.91□□□□□ -0.34
SS18-216ENST00000580751 CCL13Q99616 98 aa12.91□□□□□ -0.34
SS18-216ENST00000580751 BANF2Q9H503 90 aa12.91□□□□□ -0.34
SS18-216ENST00000580751 CTSZQ9UBR2 303 aa12.91□□□□□ -0.34
SS18-216ENST00000580751 MALRD1Q5VYJ5 2156 aa12.91□□□□□ -0.34
SS18-216ENST00000580751 A0A1W2PP11 408 aa12.9□□□□□ -0.34
SS18-216ENST00000580751 POM121CA8CG34 1229 aa12.9□□□□□ -0.34
SS18-216ENST00000580751 SERPINE3A8MV23 424 aa12.9□□□□□ -0.34
SS18-216ENST00000580751 SIGLEC5O15389 551 aa12.9□□□□□ -0.34
SS18-216ENST00000580751 NDUFB3O43676 98 aa12.9□□□□□ -0.34
SS18-216ENST00000580751 TGFAP01135 160 aa12.9□□□□□ -0.34
SS18-216ENST00000580751 PRKACAP17612 351 aa12.9□□□□□ -0.34
SS18-216ENST00000580751 PRDX2P32119 198 aa12.9□□□□□ -0.34
SS18-216ENST00000580751 VEGFCP49767 419 aa12.9□□□□□ -0.34
SS18-216ENST00000580751 SEC61A1P61619 476 aaKnown RBP12.9□□□□□ -0.34
SS18-216ENST00000580751 SSBP1Q04837 148 aaKnown RBP12.9□□□□□ -0.34
SS18-216ENST00000580751 PLA2G7Q13093 441 aa12.9□□□□□ -0.34
SS18-216ENST00000580751 DCTN2Q13561 401 aaKnown RBP12.9□□□□□ -0.34
SS18-216ENST00000580751 C11orf91Q3C1V1 193 aa12.9□□□□□ -0.34
SS18-216ENST00000580751 LRRC10Q5BKY1 277 aa12.9□□□□□ -0.34
SS18-216ENST00000580751 WDR25Q64LD2 544 aaPredicted RBP12.9□□□□□ -0.34
SS18-216ENST00000580751 GLCCI1Q86VQ1 547 aa12.9□□□□□ -0.34
SS18-216ENST00000580751 FAM216BQ8N7L0 139 aa12.9□□□□□ -0.34
SS18-216ENST00000580751 OR10K1Q8NGX5 313 aa12.9□□□□□ -0.34
SS18-216ENST00000580751 DEDD2Q8WXF8 326 aa12.9□□□□□ -0.34
SS18-216ENST00000580751 GAFA1Q96PS6 74 aa12.9□□□□□ -0.34
SS18-216ENST00000580751 KCNK15Q9H427 330 aa12.9□□□□□ -0.34
SS18-216ENST00000580751 AUNIPQ9H7T9 357 aa12.9□□□□□ -0.34
SS18-216ENST00000580751 LPAR2Q9HBW0 351 aa12.9□□□□□ -0.34
SS18-216ENST00000580751 OR14J1Q9UGF5 321 aa12.9□□□□□ -0.34
SS18-216ENST00000580751 SONP18583 2426 aaKnown RBP12.89□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms