RNA–Protein interactions for RNA: ENST00000580642.2

SS18-215, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-215ENST00000580642 ACTBL2Q562R1 376 aa12.8□□□□□ -0.36
SS18-215ENST00000580642 PAN3Q58A45 887 aaKnown RBP12.8□□□□□ -0.36
SS18-215ENST00000580642 TRAPPC6BQ86SZ2 158 aa12.8□□□□□ -0.36
SS18-215ENST00000580642 MUC20Q8N307 709 aaPredicted RBP12.8□□□□□ -0.36
SS18-215ENST00000580642 TMEM229BQ8NBD8 167 aa12.8□□□□□ -0.36
SS18-215ENST00000580642 TIMD4Q96H15 378 aa12.8□□□□□ -0.36
SS18-215ENST00000580642 MED30Q96HR3 178 aa12.8□□□□□ -0.36
SS18-215ENST00000580642 CCL19Q99731 98 aa12.8□□□□□ -0.36
SS18-215ENST00000580642 ZNF665Q9H7R5 613 aa12.8□□□□□ -0.36
SS18-215ENST00000580642 CHODLQ9H9P2 273 aa12.8□□□□□ -0.36
SS18-215ENST00000580642 ZMAT3Q9HA38 289 aaKnown RBP12.8□□□□□ -0.36
SS18-215ENST00000580642 ZNF701Q9NV72 531 aaPredicted RBP12.8□□□□□ -0.36
SS18-215ENST00000580642 KAAG1Q9UBP8 84 aa12.8□□□□□ -0.36
SS18-215ENST00000580642 AK3Q9UIJ7 227 aa12.8□□□□□ -0.36
SS18-215ENST00000580642 MEIOCA2RUB1 952 aa12.79□□□□□ -0.36
SS18-215ENST00000580642 FUOMA2VDF0 154 aa12.79□□□□□ -0.36
SS18-215ENST00000580642 NAP1L6A6NFF2 107 aa12.79□□□□□ -0.36
SS18-215ENST00000580642 NKX6-3A6NJ46 265 aa12.79□□□□□ -0.36
SS18-215ENST00000580642 NAPSAO96009 420 aa12.79□□□□□ -0.36
SS18-215ENST00000580642 DAOP14920 347 aa12.79□□□□□ -0.36
SS18-215ENST00000580642 DUSP1P28562 367 aa12.79□□□□□ -0.36
SS18-215ENST00000580642 SNU13P55769 128 aaKnown RBP12.79□□□□□ -0.36
SS18-215ENST00000580642 TAS2R19P59542 299 aa12.79□□□□□ -0.36
SS18-215ENST00000580642 BTG1P62324 171 aa12.79□□□□□ -0.36
SS18-215ENST00000580642 ZNF788Q6ZQV5 615 aa12.79□□□□□ -0.36
SS18-215ENST00000580642 MOB1BQ7L9L4 216 aa12.79□□□□□ -0.36
SS18-215ENST00000580642 ZNF554Q86TJ5 538 aa12.79□□□□□ -0.36
SS18-215ENST00000580642 HOGA1Q86XE5 327 aa12.79□□□□□ -0.36
SS18-215ENST00000580642 BATF2Q8N1L9 274 aa12.79□□□□□ -0.36
SS18-215ENST00000580642 RAB1CQ92928 201 aa12.79□□□□□ -0.36
SS18-215ENST00000580642 COX4I2Q96KJ9 171 aa12.79□□□□□ -0.36
SS18-215ENST00000580642 IFT46Q9NQC8 304 aa12.79□□□□□ -0.36
SS18-215ENST00000580642 ETAA1Q9NY74 926 aa12.79□□□□□ -0.36
SS18-215ENST00000580642 KLK11Q9UBX7 282 aa12.79□□□□□ -0.36
SS18-215ENST00000580642 OR14J1Q9UGF5 321 aa12.79□□□□□ -0.36
SS18-215ENST00000580642 COL12A1Q99715 3063 aa12.78□□□□□ -0.36
SS18-215ENST00000580642 K7N7A8 449 aa12.78□□□□□ -0.36
SS18-215ENST00000580642 TNFRSF13BO14836 293 aaPredicted RBP12.78□□□□□ -0.36
SS18-215ENST00000580642 MGST3O14880 152 aa12.78□□□□□ -0.36
SS18-215ENST00000580642 SIGLEC5O15389 551 aa12.78□□□□□ -0.36
SS18-215ENST00000580642 SSX5O60225 188 aa12.78□□□□□ -0.36
SS18-215ENST00000580642 ZNF737O75373 536 aa12.78□□□□□ -0.36
SS18-215ENST00000580642 ERP29P30040 261 aaKnown RBP12.78□□□□□ -0.36
SS18-215ENST00000580642 CD80P33681 288 aa12.78□□□□□ -0.36
SS18-215ENST00000580642 IFITM3Q01628 133 aa12.78□□□□□ -0.36
SS18-215ENST00000580642 COL10A1Q03692 680 aa12.78□□□□□ -0.36
SS18-215ENST00000580642 MADCAM1Q13477 382 aa12.78□□□□□ -0.36
SS18-215ENST00000580642 KLF9Q13886 244 aaPredicted RBP12.78□□□□□ -0.36
SS18-215ENST00000580642 TMEM155Q4W5P6 130 aa12.78□□□□□ -0.36
SS18-215ENST00000580642 ZNF57Q68EA5 555 aaPredicted RBP12.78□□□□□ -0.36
SS18-215ENST00000580642 SLC35E4Q6ICL7 350 aa12.78□□□□□ -0.36
SS18-215ENST00000580642 MZT2BQ6NZ67 158 aa12.78□□□□□ -0.36
SS18-215ENST00000580642 DCDC5Q6ZRR9 648 aa12.78□□□□□ -0.36
SS18-215ENST00000580642 SLC36A1Q7Z2H8 476 aa12.78□□□□□ -0.36
SS18-215ENST00000580642 CD177Q8N6Q3 437 aa12.78□□□□□ -0.36
SS18-215ENST00000580642 BOLLQ8N9W6 283 aaKnown RBP12.78□□□□□ -0.36
SS18-215ENST00000580642 MINDY2Q8NBR6 621 aa12.78□□□□□ -0.36
SS18-215ENST00000580642 NEK7Q8TDX7 302 aa12.78□□□□□ -0.36
SS18-215ENST00000580642 NUDCD2Q8WVJ2 157 aa12.78□□□□□ -0.36
SS18-215ENST00000580642 TMEM165Q9HC07 324 aa12.78□□□□□ -0.36
SS18-215ENST00000580642 KIR2DS1A0A191URI9 304 aa12.77□□□□□ -0.37
SS18-215ENST00000580642 TMEM30CPA0ZSE6 113 aa12.77□□□□□ -0.37
SS18-215ENST00000580642 C3orf80F5H4A9 247 aa12.77□□□□□ -0.37
SS18-215ENST00000580642 SIRPB1O00241 398 aa12.77□□□□□ -0.37
SS18-215ENST00000580642 GPR37O15354 613 aa12.77□□□□□ -0.37
SS18-215ENST00000580642 LANCL1O43813 399 aa12.77□□□□□ -0.37
SS18-215ENST00000580642 DIRAS3O95661 229 aa12.77□□□□□ -0.37
SS18-215ENST00000580642 PTTG1O95997 202 aa12.77□□□□□ -0.37
SS18-215ENST00000580642 CD74P04233 296 aa12.77□□□□□ -0.37
SS18-215ENST00000580642 FCGR3AP08637 254 aa12.77□□□□□ -0.37
SS18-215ENST00000580642 AKAIN1P0CW23 69 aa12.77□□□□□ -0.37
SS18-215ENST00000580642 PTHLHP12272 177 aa12.77□□□□□ -0.37
SS18-215ENST00000580642 COL8A2P25067 703 aa12.77□□□□□ -0.37
SS18-215ENST00000580642 KIR2DS4P43632 304 aa12.77□□□□□ -0.37
SS18-215ENST00000580642 TAS2R46P59540 309 aa12.77□□□□□ -0.37
SS18-215ENST00000580642 GMFBP60983 142 aa12.77□□□□□ -0.37
SS18-215ENST00000580642 IL13RA1P78552 427 aa12.77□□□□□ -0.37
SS18-215ENST00000580642 GUCA2AQ02747 115 aa12.77□□□□□ -0.37
SS18-215ENST00000580642 MEF2DQ14814 521 aa12.77□□□□□ -0.37
SS18-215ENST00000580642 KIR2DS1Q14954 304 aa12.77□□□□□ -0.37
SS18-215ENST00000580642 RGS21Q2M5E4 152 aa12.77□□□□□ -0.37
SS18-215ENST00000580642 C11orf91Q3C1V1 193 aa12.77□□□□□ -0.37
SS18-215ENST00000580642 OLFML2AQ68BL7 652 aa12.77□□□□□ -0.37
SS18-215ENST00000580642 ZNF880Q6PDB4 577 aa12.77□□□□□ -0.37
SS18-215ENST00000580642 TRAT1Q6PIZ9 186 aa12.77□□□□□ -0.37
SS18-215ENST00000580642 ZNF497Q6ZNH5 498 aa12.77□□□□□ -0.37
SS18-215ENST00000580642 C17orf107Q6ZR85 190 aa12.77□□□□□ -0.37
SS18-215ENST00000580642 OPN4Q9UHM6 478 aa12.77□□□□□ -0.37
SS18-215ENST00000580642 CACNG2Q9Y698 323 aa12.77□□□□□ -0.37
SS18-215ENST00000580642 TMEM82A0PJX8 343 aa12.76□□□□□ -0.37
SS18-215ENST00000580642 UBE2QL1A1L167 161 aa12.76□□□□□ -0.37
SS18-215ENST00000580642 ZNF736B4DX44 427 aaPredicted RBP12.76□□□□□ -0.37
SS18-215ENST00000580642 PSPNO60542 156 aa12.76□□□□□ -0.37
SS18-215ENST00000580642 IGHV2-70P01814 119 aa12.76□□□□□ -0.37
SS18-215ENST00000580642 MT-ND4P03905 459 aa12.76□□□□□ -0.37
SS18-215ENST00000580642 TK1P04183 234 aa12.76□□□□□ -0.37
SS18-215ENST00000580642 GABRA2P47869 451 aa12.76□□□□□ -0.37
SS18-215ENST00000580642 OR3A1P47881 315 aa12.76□□□□□ -0.37
SS18-215ENST00000580642 PDCD1Q15116 288 aa12.76□□□□□ -0.37
SS18-215ENST00000580642 SFRP4Q6FHJ7 346 aaPredicted RBP12.76□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms