RNA–Protein interactions for RNA: ENST00000578700.5

SS18-210, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 5

Gene SS18, Length 575 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-210ENST00000578700 BTN2A1Q7KYR7 527 aa8.6□□□□□ -1.03
SS18-210ENST00000578700 RNF144BQ7Z419 303 aa8.6□□□□□ -1.03
SS18-210ENST00000578700 C1QL2Q7Z5L3 287 aa8.6□□□□□ -1.03
SS18-210ENST00000578700 MYPOPQ86VE0 399 aaPredicted RBP8.6□□□□□ -1.03
SS18-210ENST00000578700 CADM3Q8N126 398 aa8.6□□□□□ -1.03
SS18-210ENST00000578700 OR8G5Q8NG78 346 aa8.6□□□□□ -1.03
SS18-210ENST00000578700 OR56B4Q8NH76 319 aa8.6□□□□□ -1.03
SS18-210ENST00000578700 DACT3Q96B18 629 aaPredicted RBP8.6□□□□□ -1.03
SS18-210ENST00000578700 Q96M66 194 aa8.6□□□□□ -1.03
SS18-210ENST00000578700 VRK1Q99986 396 aaPredicted RBP8.6□□□□□ -1.03
SS18-210ENST00000578700 NICN1Q9BSH3 213 aa8.6□□□□□ -1.03
SS18-210ENST00000578700 PIMREGQ9BSJ6 248 aa8.6□□□□□ -1.03
SS18-210ENST00000578700 PKIBQ9C010 78 aa8.6□□□□□ -1.03
SS18-210ENST00000578700 POFUT1Q9H488 388 aa8.6□□□□□ -1.03
SS18-210ENST00000578700 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP8.6□□□□□ -1.03
SS18-210ENST00000578700 TMEM100Q9NV29 134 aa8.6□□□□□ -1.03
SS18-210ENST00000578700 NUDT15Q9NV35 164 aa8.6□□□□□ -1.03
SS18-210ENST00000578700 SCP2D1Q9UJQ7 156 aa8.6□□□□□ -1.03
SS18-210ENST00000578700 ST3GAL6Q9Y274 331 aa8.6□□□□□ -1.03
SS18-210ENST00000578700 POLDIP2Q9Y2S7 368 aa8.6□□□□□ -1.03
SS18-210ENST00000578700 IGHV4-61A0A0C4DH41 118 aa8.59□□□□□ -1.03
SS18-210ENST00000578700 PLSCR5A0PG75 271 aa8.59□□□□□ -1.03
SS18-210ENST00000578700 LRP5LA4QPB2 252 aa8.59□□□□□ -1.03
SS18-210ENST00000578700 TMEM210A6NLX4 147 aa8.59□□□□□ -1.03
SS18-210ENST00000578700 J3QT63 122 aa8.59□□□□□ -1.03
SS18-210ENST00000578700 PRAF2O60831 178 aa8.59□□□□□ -1.03
SS18-210ENST00000578700 KITLGP21583 273 aa8.59□□□□□ -1.03
SS18-210ENST00000578700 APOBEC3AP31941 199 aaPredicted RBP8.59□□□□□ -1.03
SS18-210ENST00000578700 CCR6P51684 374 aa8.59□□□□□ -1.03
SS18-210ENST00000578700 IL24Q13007 206 aa8.59□□□□□ -1.03
SS18-210ENST00000578700 ZMYND11Q15326 602 aa8.59□□□□□ -1.03
SS18-210ENST00000578700 RBMS2Q15434 407 aaKnown RBP8.59□□□□□ -1.03
SS18-210ENST00000578700 TATDN3Q17R31 274 aa8.59□□□□□ -1.03
SS18-210ENST00000578700 MBNL2Q5VZF2 373 aaKnown RBP8.59□□□□□ -1.03
SS18-210ENST00000578700 HAGHLQ6PII5 290 aaPredicted RBP8.59□□□□□ -1.03
SS18-210ENST00000578700 FIP1L1Q6UN15 594 aaKnown RBP8.59□□□□□ -1.03
SS18-210ENST00000578700 TMEM17Q86X19 198 aa8.59□□□□□ -1.03
SS18-210ENST00000578700 Q8IYB0 196 aa8.59□□□□□ -1.03
SS18-210ENST00000578700 SLAMF9Q96A28 289 aa8.59□□□□□ -1.03
SS18-210ENST00000578700 MARS2Q96GW9 593 aaKnown RBP8.59□□□□□ -1.03
SS18-210ENST00000578700 ARHGAP5-AS1Q96IT6 56 aa8.59□□□□□ -1.03
SS18-210ENST00000578700 PRRT1Q99946 306 aa8.59□□□□□ -1.03
SS18-210ENST00000578700 PECRQ9BY49 303 aa8.59□□□□□ -1.03
SS18-210ENST00000578700 SPACA1Q9HBV2 294 aa8.59□□□□□ -1.03
SS18-210ENST00000578700 PURGQ9UJV8 347 aaKnown RBP8.59□□□□□ -1.03
SS18-210ENST00000578700 HSF4Q9ULV5 492 aa8.59□□□□□ -1.03
SS18-210ENST00000578700 TRAV6A0A075B6T7 132 aa8.58□□□□□ -1.04
SS18-210ENST00000578700 A0A1W2PP11 408 aa8.58□□□□□ -1.04
SS18-210ENST00000578700 MFNGO00587 321 aa8.58□□□□□ -1.04
SS18-210ENST00000578700 CD3DP04234 171 aa8.58□□□□□ -1.04
SS18-210ENST00000578700 AMY2AP04746 511 aa8.58□□□□□ -1.04
SS18-210ENST00000578700 TRAPPC2P0DI81 140 aa8.58□□□□□ -1.04
SS18-210ENST00000578700 TRAPPC2BP0DI82 140 aa8.58□□□□□ -1.04
SS18-210ENST00000578700 AMY2BP19961 511 aa8.58□□□□□ -1.04
SS18-210ENST00000578700 HLA-DMAP28067 261 aa8.58□□□□□ -1.04
SS18-210ENST00000578700 GLRXP35754 106 aa8.58□□□□□ -1.04
SS18-210ENST00000578700 OR3A3P47888 321 aa8.58□□□□□ -1.04
SS18-210ENST00000578700 RBM11P57052 281 aaKnown RBP8.58□□□□□ -1.04
SS18-210ENST00000578700 KLF3P57682 345 aaPredicted RBP8.58□□□□□ -1.04
SS18-210ENST00000578700 RAB25P57735 213 aa8.58□□□□□ -1.04
SS18-210ENST00000578700 TAS2R46P59540 309 aa8.58□□□□□ -1.04
SS18-210ENST00000578700 ERVS71-1P61550 626 aa8.58□□□□□ -1.04
SS18-210ENST00000578700 PSG7Q13046 419 aa8.58□□□□□ -1.04
SS18-210ENST00000578700 TAF9Q16594 264 aa8.58□□□□□ -1.04
SS18-210ENST00000578700 ELP2Q6IA86 826 aa8.58□□□□□ -1.04
SS18-210ENST00000578700 LINC00596Q86U02 117 aa8.58□□□□□ -1.04
SS18-210ENST00000578700 CALHM1Q8IU99 346 aa8.58□□□□□ -1.04
SS18-210ENST00000578700 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP8.58□□□□□ -1.04
SS18-210ENST00000578700 OR4C16Q8NGL9 310 aa8.58□□□□□ -1.04
SS18-210ENST00000578700 OR13G1Q8NGZ3 307 aa8.58□□□□□ -1.04
SS18-210ENST00000578700 NUDCD2Q8WVJ2 157 aa8.58□□□□□ -1.04
SS18-210ENST00000578700 HPSE2Q8WWQ2 592 aa8.58□□□□□ -1.04
SS18-210ENST00000578700 UPRTQ96BW1 309 aa8.58□□□□□ -1.04
SS18-210ENST00000578700 SLC25A21Q9BQT8 299 aaPredicted RBP8.58□□□□□ -1.04
SS18-210ENST00000578700 OCSTAMPQ9BR26 566 aa8.58□□□□□ -1.04
SS18-210ENST00000578700 GINS4Q9BRT9 223 aa8.58□□□□□ -1.04
SS18-210ENST00000578700 C20orf85Q9H1P6 137 aa8.58□□□□□ -1.04
SS18-210ENST00000578700 GPN1Q9HCN4 374 aaPredicted RBP8.58□□□□□ -1.04
SS18-210ENST00000578700 A0A0A6YYD4 124 aa8.57□□□□□ -1.04
SS18-210ENST00000578700 HMX3A6NHT5 357 aa8.57□□□□□ -1.04
SS18-210ENST00000578700 VWC2LB2RUY7 222 aa8.57□□□□□ -1.04
SS18-210ENST00000578700 PDCD6O75340 191 aa8.57□□□□□ -1.04
SS18-210ENST00000578700 PEX14O75381 377 aa8.57□□□□□ -1.04
SS18-210ENST00000578700 CCNKO75909 580 aa8.57□□□□□ -1.04
SS18-210ENST00000578700 OR7C1O76099 320 aaPredicted RBP8.57□□□□□ -1.04
SS18-210ENST00000578700 NDUFB6O95139 128 aa8.57□□□□□ -1.04
SS18-210ENST00000578700 FUT3P21217 361 aa8.57□□□□□ -1.04
SS18-210ENST00000578700 CALCRP30988 508 aa8.57□□□□□ -1.04
SS18-210ENST00000578700 BTCP35070 178 aa8.57□□□□□ -1.04
SS18-210ENST00000578700 MPV17P39210 176 aa8.57□□□□□ -1.04
SS18-210ENST00000578700 PMELP40967 661 aa8.57□□□□□ -1.04
SS18-210ENST00000578700 FGF12P61328 243 aa8.57□□□□□ -1.04
SS18-210ENST00000578700 MPV17LQ2QL34 196 aa8.57□□□□□ -1.04
SS18-210ENST00000578700 PLAC9Q5JTB6 97 aa8.57□□□□□ -1.04
SS18-210ENST00000578700 ATAD3CQ5T2N8 411 aa8.57□□□□□ -1.04
SS18-210ENST00000578700 CRIP3Q6Q6R5 217 aa8.57□□□□□ -1.04
SS18-210ENST00000578700 BPIFB2Q8N4F0 458 aa8.57□□□□□ -1.04
SS18-210ENST00000578700 OR5H2Q8NGV7 314 aa8.57□□□□□ -1.04
SS18-210ENST00000578700 OR4K15Q8NH41 348 aa8.57□□□□□ -1.04
SS18-210ENST00000578700 CHAC2Q8WUX2 184 aa8.57□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms