RNA–Protein interactions for RNA: ENST00000573474.5

CCDC40-209, Transcript of coiled-coil domain containing 40, humanhuman

TSL 4

Gene CCDC40, Length 554 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-209ENST00000573474 RFX2P48378 723 aa11.48□□□□□ -0.57
CCDC40-209ENST00000573474 CEBPDP49716 269 aaPredicted RBP11.48□□□□□ -0.57
CCDC40-209ENST00000573474 MICBQ29980 383 aa11.48□□□□□ -0.57
CCDC40-209ENST00000573474 SHEQ5VZ18 495 aa11.48□□□□□ -0.57
CCDC40-209ENST00000573474 TEX36Q5VZQ5 186 aa11.48□□□□□ -0.57
CCDC40-209ENST00000573474 SFRP4Q6FHJ7 346 aaPredicted RBP11.48□□□□□ -0.57
CCDC40-209ENST00000573474 TGIF2LYQ8IUE0 185 aa11.48□□□□□ -0.57
CCDC40-209ENST00000573474 CENPSQ8N2Z9 138 aa11.48□□□□□ -0.57
CCDC40-209ENST00000573474 BPIFB2Q8N4F0 458 aa11.48□□□□□ -0.57
CCDC40-209ENST00000573474 CD177Q8N6Q3 437 aa11.48□□□□□ -0.57
CCDC40-209ENST00000573474 OR5T2Q8NGG2 359 aa11.48□□□□□ -0.57
CCDC40-209ENST00000573474 CCL17Q92583 94 aa11.48□□□□□ -0.57
CCDC40-209ENST00000573474 DYRK2Q92630 601 aa11.48□□□□□ -0.57
CCDC40-209ENST00000573474 HDHD3Q9BSH5 251 aaPredicted RBP11.48□□□□□ -0.57
CCDC40-209ENST00000573474 ST6GALNAC5Q9BVH7 336 aa11.48□□□□□ -0.57
CCDC40-209ENST00000573474 C12orf4Q9NQ89 552 aa11.48□□□□□ -0.57
CCDC40-209ENST00000573474 EDARQ9UNE0 448 aa11.48□□□□□ -0.57
CCDC40-209ENST00000573474 PKDREJQ9NTG1 2253 aa11.47□□□□□ -0.57
CCDC40-209ENST00000573474 CHD3Q12873 2000 aaKnown RBP11.47□□□□□ -0.57
CCDC40-209ENST00000573474 IGKV1D-17A0A075B6S4 117 aa11.47□□□□□ -0.57
CCDC40-209ENST00000573474 IGHV3OR15-7A0A075B7D8 119 aa11.47□□□□□ -0.57
CCDC40-209ENST00000573474 FAM240BA0A1B0GVZ2 78 aa11.47□□□□□ -0.57
CCDC40-209ENST00000573474 A1L4Q6 167 aa11.47□□□□□ -0.57
CCDC40-209ENST00000573474 OOEPA6NGQ2 149 aa11.47□□□□□ -0.57
CCDC40-209ENST00000573474 POM121CA8CG34 1229 aa11.47□□□□□ -0.57
CCDC40-209ENST00000573474 VGLL3A8MV65 326 aa11.47□□□□□ -0.57
CCDC40-209ENST00000573474 H7C1Q1 480 aa11.47□□□□□ -0.57
CCDC40-209ENST00000573474 HSPB6O14558 160 aa11.47□□□□□ -0.57
CCDC40-209ENST00000573474 MT-ND4P03905 459 aa11.47□□□□□ -0.57
CCDC40-209ENST00000573474 CD74P04233 296 aa11.47□□□□□ -0.57
CCDC40-209ENST00000573474 CD3DP04234 171 aa11.47□□□□□ -0.57
CCDC40-209ENST00000573474 FCER2P06734 321 aa11.47□□□□□ -0.57
CCDC40-209ENST00000573474 FCGR3AP08637 254 aa11.47□□□□□ -0.57
CCDC40-209ENST00000573474 AMY2BP19961 511 aa11.47□□□□□ -0.57
CCDC40-209ENST00000573474 TBPP20226 339 aa11.47□□□□□ -0.57
CCDC40-209ENST00000573474 HLA-DMAP28067 261 aa11.47□□□□□ -0.57
CCDC40-209ENST00000573474 GABRA2P47869 451 aa11.47□□□□□ -0.57
CCDC40-209ENST00000573474 KCNJ3P48549 501 aa11.47□□□□□ -0.57
CCDC40-209ENST00000573474 MRPS11P82912 194 aaKnown RBP11.47□□□□□ -0.57
CCDC40-209ENST00000573474 COL10A1Q03692 680 aa11.47□□□□□ -0.57
CCDC40-209ENST00000573474 HFEQ30201 348 aa11.47□□□□□ -0.57
CCDC40-209ENST00000573474 FAM201AQ5SY85 155 aa11.47□□□□□ -0.57
CCDC40-209ENST00000573474 STEAP1BQ6NZ63 245 aa11.47□□□□□ -0.57
CCDC40-209ENST00000573474 C20orf204Q6ZNR8 217 aa11.47□□□□□ -0.57
CCDC40-209ENST00000573474 NRARPQ7Z6K4 114 aa11.47□□□□□ -0.57
CCDC40-209ENST00000573474 BEST4Q8NFU0 473 aa11.47□□□□□ -0.57
CCDC40-209ENST00000573474 OR4S1Q8NGB4 309 aa11.47□□□□□ -0.57
CCDC40-209ENST00000573474 ANGPTL6Q8NI99 470 aa11.47□□□□□ -0.57
CCDC40-209ENST00000573474 CLEC4MQ9H2X3 399 aaPredicted RBP11.47□□□□□ -0.57
CCDC40-209ENST00000573474 CHMP1AQ9HD42 196 aaPredicted RBP11.47□□□□□ -0.57
CCDC40-209ENST00000573474 DLL4Q9NR61 685 aa11.47□□□□□ -0.57
CCDC40-209ENST00000573474 ZNF701Q9NV72 531 aaPredicted RBP11.47□□□□□ -0.57
CCDC40-209ENST00000573474 DCAF16Q9NXF7 216 aa11.47□□□□□ -0.57
CCDC40-209ENST00000573474 ZNF230Q9UIE0 474 aaPredicted RBP11.47□□□□□ -0.57
CCDC40-209ENST00000573474 ZNF222Q9UK12 451 aa11.47□□□□□ -0.57
CCDC40-209ENST00000573474 ARFGEF3Q5TH69 2177 aa11.46□□□□□ -0.57
CCDC40-209ENST00000573474 PPIAL4EA0A075B759 164 aa11.46□□□□□ -0.57
CCDC40-209ENST00000573474 TRBV6-6A0A0A6YYG2 114 aa11.46□□□□□ -0.57
CCDC40-209ENST00000573474 TRAV38-1A0A0B4J264 116 aa11.46□□□□□ -0.57
CCDC40-209ENST00000573474 TMEM82A0PJX8 343 aa11.46□□□□□ -0.57
CCDC40-209ENST00000573474 PPIAL4DF5H284 164 aa11.46□□□□□ -0.57
CCDC40-209ENST00000573474 PSPNO60542 156 aa11.46□□□□□ -0.57
CCDC40-209ENST00000573474 RAB3DO95716 219 aa11.46□□□□□ -0.57
CCDC40-209ENST00000573474 NAPSAO96009 420 aa11.46□□□□□ -0.57
CCDC40-209ENST00000573474 PPIAL4FP0DN26 164 aa11.46□□□□□ -0.57
CCDC40-209ENST00000573474 MEF2DQ14814 521 aa11.46□□□□□ -0.57
CCDC40-209ENST00000573474 SRSF7Q16629 238 aaKnown RBP eCLIP11.46□□□□□ -0.57
CCDC40-209ENST00000573474 ACTBL2Q562R1 376 aa11.46□□□□□ -0.57
CCDC40-209ENST00000573474 STUMQ69YW2 141 aa11.46□□□□□ -0.57
CCDC40-209ENST00000573474 OR52W1Q6IF63 320 aa11.46□□□□□ -0.57
CCDC40-209ENST00000573474 DEFB108BQ8NET1 73 aa11.46□□□□□ -0.57
CCDC40-209ENST00000573474 OR4C16Q8NGL9 310 aa11.46□□□□□ -0.57
CCDC40-209ENST00000573474 OR4K15Q8NH41 348 aa11.46□□□□□ -0.57
CCDC40-209ENST00000573474 PPP1R35Q8TAP8 253 aa11.46□□□□□ -0.57
CCDC40-209ENST00000573474 ENKURQ8TC29 256 aa11.46□□□□□ -0.57
CCDC40-209ENST00000573474 SNAPC3Q92966 411 aa11.46□□□□□ -0.57
CCDC40-209ENST00000573474 SDSLQ96GA7 329 aa11.46□□□□□ -0.57
CCDC40-209ENST00000573474 SNX22Q96L94 193 aa11.46□□□□□ -0.57
CCDC40-209ENST00000573474 PPA2Q9H2U2 334 aa11.46□□□□□ -0.57
CCDC40-209ENST00000573474 PLEKHF2Q9H8W4 249 aa11.46□□□□□ -0.57
CCDC40-209ENST00000573474 TMEM165Q9HC07 324 aa11.46□□□□□ -0.57
CCDC40-209ENST00000573474 METRNQ9UJH8 293 aa11.46□□□□□ -0.57
CCDC40-209ENST00000573474 PPIAL4AQ9Y536 164 aa11.46□□□□□ -0.57
CCDC40-209ENST00000573474 CACNA1DQ01668 2161 aa11.45□□□□□ -0.58
CCDC40-209ENST00000573474 SSX4O60224 188 aa11.45□□□□□ -0.58
CCDC40-209ENST00000573474 ZNF737O75373 536 aa11.45□□□□□ -0.58
CCDC40-209ENST00000573474 ZNF205O95201 554 aa11.45□□□□□ -0.58
CCDC40-209ENST00000573474 TFF1P04155 84 aa11.45□□□□□ -0.58
CCDC40-209ENST00000573474 SPNP16150 400 aa11.45□□□□□ -0.58
CCDC40-209ENST00000573474 COL8A2P25067 703 aa11.45□□□□□ -0.58
CCDC40-209ENST00000573474 SLC6A1P30531 599 aa11.45□□□□□ -0.58
CCDC40-209ENST00000573474 BTCP35070 178 aa11.45□□□□□ -0.58
CCDC40-209ENST00000573474 OR3A1P47881 315 aa11.45□□□□□ -0.58
CCDC40-209ENST00000573474 TAS2R46P59540 309 aa11.45□□□□□ -0.58
CCDC40-209ENST00000573474 RNASE10Q5GAN6 216 aaKnown RBP11.45□□□□□ -0.58
CCDC40-209ENST00000573474 ATPAF1Q5TC12 328 aaPredicted RBP11.45□□□□□ -0.58
CCDC40-209ENST00000573474 CCBE1Q6UXH8 406 aaPredicted RBP11.45□□□□□ -0.58
CCDC40-209ENST00000573474 ZNF497Q6ZNH5 498 aa11.45□□□□□ -0.58
CCDC40-209ENST00000573474 Q6ZNX1 250 aa11.45□□□□□ -0.58
CCDC40-209ENST00000573474 C17orf107Q6ZR85 190 aa11.45□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 50.7 ms