RNA–Protein interactions for RNA: ENST00000572290.1

NUP88-204, Transcript of nucleoporin 88, humanhuman

TSL 5

Gene NUP88, Length 615 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-204ENST00000572290 NR1H4Q96RI1 486 aaPredicted RBP16.38■□□□□ 0.21
NUP88-204ENST00000572290 NKX3-1Q99801 234 aaPredicted RBP16.38■□□□□ 0.21
NUP88-204ENST00000572290 MEGF9Q9H1U4 602 aa16.38■□□□□ 0.21
NUP88-204ENST00000572290 PPA2Q9H2U2 334 aa16.38■□□□□ 0.21
NUP88-204ENST00000572290 SCN3BQ9NY72 215 aa16.38■□□□□ 0.21
NUP88-204ENST00000572290 CKLFQ9UBR5 152 aa16.38■□□□□ 0.21
NUP88-204ENST00000572290 UBE2J1Q9Y385 318 aaPredicted RBP16.38■□□□□ 0.21
NUP88-204ENST00000572290 PTGES3LE9PB15 166 aa16.37■□□□□ 0.21
NUP88-204ENST00000572290 SLC33A1O00400 549 aaPredicted RBP16.37■□□□□ 0.21
NUP88-204ENST00000572290 GPX5O75715 221 aa16.37■□□□□ 0.21
NUP88-204ENST00000572290 CD1AP06126 327 aa16.37■□□□□ 0.21
NUP88-204ENST00000572290 CELP19835 753 aa16.37■□□□□ 0.21
NUP88-204ENST00000572290 OR3A4PP47883 348 aa16.37■□□□□ 0.21
NUP88-204ENST00000572290 AESQ08117 197 aa16.37■□□□□ 0.21
NUP88-204ENST00000572290 IL13RA2Q14627 380 aa16.37■□□□□ 0.21
NUP88-204ENST00000572290 RNLSQ5VYX0 342 aa16.37■□□□□ 0.21
NUP88-204ENST00000572290 Q8NFD4 153 aa16.37■□□□□ 0.21
NUP88-204ENST00000572290 OR10K1Q8NGX5 313 aa16.37■□□□□ 0.21
NUP88-204ENST00000572290 MYDGFQ969H8 173 aa16.37■□□□□ 0.21
NUP88-204ENST00000572290 SSX3Q99909 188 aa16.37■□□□□ 0.21
NUP88-204ENST00000572290 VCX3BQ9H321 246 aa16.37■□□□□ 0.21
NUP88-204ENST00000572290 ING4Q9UNL4 249 aa16.37■□□□□ 0.21
NUP88-204ENST00000572290 SESN1Q9Y6P5 492 aa16.37■□□□□ 0.21
NUP88-204ENST00000572290 TRGV10A0A0A0MS01 117 aa16.36■□□□□ 0.21
NUP88-204ENST00000572290 TRBV5-7A0A0A0MS05 114 aa16.36■□□□□ 0.21
NUP88-204ENST00000572290 H3BUX3 64 aa16.36■□□□□ 0.21
NUP88-204ENST00000572290 HTR3BO95264 441 aa16.36■□□□□ 0.21
NUP88-204ENST00000572290 ARG1P05089 322 aa16.36■□□□□ 0.21
NUP88-204ENST00000572290 CSN2P05814 226 aa16.36■□□□□ 0.21
NUP88-204ENST00000572290 GLIPR1P48060 266 aa16.36■□□□□ 0.21
NUP88-204ENST00000572290 DOC2BQ14184 412 aa16.36■□□□□ 0.21
NUP88-204ENST00000572290 OR11H6Q8NGC7 330 aa16.36■□□□□ 0.21
NUP88-204ENST00000572290 OR51T1Q8NGJ9 327 aa16.36■□□□□ 0.21
NUP88-204ENST00000572290 OR14A2Q96R54 314 aa16.36■□□□□ 0.21
NUP88-204ENST00000572290 S100A13Q99584 98 aa16.36■□□□□ 0.21
NUP88-204ENST00000572290 MND1Q9BWT6 205 aa16.36■□□□□ 0.21
NUP88-204ENST00000572290 METTL9Q9H1A3 318 aa16.36■□□□□ 0.21
NUP88-204ENST00000572290 TBL2Q9Y4P3 447 aaKnown RBP16.36■□□□□ 0.21
NUP88-204ENST00000572290 TRAV8-7A0A075B6U6 113 aa16.35■□□□□ 0.21
NUP88-204ENST00000572290 A0A1W2PPK0 400 aa16.35■□□□□ 0.21
NUP88-204ENST00000572290 FAM90A8PA6NJQ4 464 aa16.35■□□□□ 0.21
NUP88-204ENST00000572290 ODF3BA8MYP8 253 aa16.35■□□□□ 0.21
NUP88-204ENST00000572290 H0YHG0 523 aa16.35■□□□□ 0.21
NUP88-204ENST00000572290 CLPXO76031 633 aa16.35■□□□□ 0.21
NUP88-204ENST00000572290 CDRT1O95170 752 aa16.35■□□□□ 0.21
NUP88-204ENST00000572290 FSTP19883 344 aa16.35■□□□□ 0.21
NUP88-204ENST00000572290 PAX6P26367 422 aa16.35■□□□□ 0.21
NUP88-204ENST00000572290 TGFBR2P37173 567 aa16.35■□□□□ 0.21
NUP88-204ENST00000572290 BDH1Q02338 343 aa16.35■□□□□ 0.21
NUP88-204ENST00000572290 DYNC1I2Q13409 638 aaKnown RBP16.35■□□□□ 0.21
NUP88-204ENST00000572290 AANATQ16613 207 aa16.35■□□□□ 0.21
NUP88-204ENST00000572290 LRRC75BQ2VPJ9 315 aa16.35■□□□□ 0.21
NUP88-204ENST00000572290 KRBOX4Q5JUW0 171 aa16.35■□□□□ 0.21
NUP88-204ENST00000572290 ZNF626Q68DY1 528 aa16.35■□□□□ 0.21
NUP88-204ENST00000572290 DHRS7BQ6IAN0 325 aaPredicted RBP16.35■□□□□ 0.21
NUP88-204ENST00000572290 LHFPL4Q7Z7J7 247 aa16.35■□□□□ 0.21
NUP88-204ENST00000572290 CORO2AQ92828 525 aa16.35■□□□□ 0.21
NUP88-204ENST00000572290 COQ2Q96H96 371 aa16.35■□□□□ 0.21
NUP88-204ENST00000572290 ZNF184Q99676 751 aaPredicted RBP16.35■□□□□ 0.21
NUP88-204ENST00000572290 CDCA4Q9BXL8 241 aa16.35■□□□□ 0.21
NUP88-204ENST00000572290 GAL3ST2Q9H3Q3 398 aa16.35■□□□□ 0.21
NUP88-204ENST00000572290 ING3Q9NXR8 418 aa16.35■□□□□ 0.21
NUP88-204ENST00000572290 TAS2R3Q9NYW6 316 aa16.35■□□□□ 0.21
NUP88-204ENST00000572290 IL36GQ9NZH8 169 aa16.35■□□□□ 0.21
NUP88-204ENST00000572290 ODAMA1E959 279 aa16.34■□□□□ 0.21
NUP88-204ENST00000572290 CLPSL1A2RUU4 121 aa16.34■□□□□ 0.21
NUP88-204ENST00000572290 CSTBP04080 98 aaKnown RBP16.34■□□□□ 0.21
NUP88-204ENST00000572290 MYF6P23409 242 aa16.34■□□□□ 0.21
NUP88-204ENST00000572290 ATXN7L3Q14CW9 347 aaPredicted RBP16.34■□□□□ 0.21
NUP88-204ENST00000572290 PIGYQ3MUY2 71 aa16.34■□□□□ 0.21
NUP88-204ENST00000572290 PAN3Q58A45 887 aaKnown RBP16.34■□□□□ 0.21
NUP88-204ENST00000572290 OLFML2AQ68BL7 652 aa16.34■□□□□ 0.21
NUP88-204ENST00000572290 SGMS2Q8NHU3 365 aa16.34■□□□□ 0.21
NUP88-204ENST00000572290 THRSPQ92748 146 aa16.34■□□□□ 0.21
NUP88-204ENST00000572290 FOXRED1Q96CU9 486 aaPredicted RBP16.34■□□□□ 0.21
NUP88-204ENST00000572290 DERL3Q96Q80 235 aa16.34■□□□□ 0.21
NUP88-204ENST00000572290 ANKRD60Q9BZ19 345 aa16.34■□□□□ 0.21
NUP88-204ENST00000572290 SLITRK2Q9H156 845 aa16.34■□□□□ 0.21
NUP88-204ENST00000572290 TMEM133Q9H2Q1 129 aa16.34■□□□□ 0.21
NUP88-204ENST00000572290 PAK1IP1Q9NWT1 392 aaPredicted RBP16.34■□□□□ 0.21
NUP88-204ENST00000572290 FOXJ3Q9UPW0 622 aa16.34■□□□□ 0.21
NUP88-204ENST00000572290 TPRKBQ9Y3C4 175 aa16.34■□□□□ 0.21
NUP88-204ENST00000572290 TENM1Q9UKZ4 2725 aa16.33■□□□□ 0.21
NUP88-204ENST00000572290 TRAV24A0A0B4J272 114 aa16.33■□□□□ 0.2
NUP88-204ENST00000572290 MAGEA13PA6NCF6 341 aa16.33■□□□□ 0.2
NUP88-204ENST00000572290 HSPB6O14558 160 aa16.33■□□□□ 0.2
NUP88-204ENST00000572290 ZNF780AO75290 641 aaPredicted RBP16.33■□□□□ 0.2
NUP88-204ENST00000572290 OSR2Q8N2R0 312 aa16.33■□□□□ 0.2
NUP88-204ENST00000572290 SGCDQ92629 289 aa16.33■□□□□ 0.2
NUP88-204ENST00000572290 MALSU1Q96EH3 234 aa16.33■□□□□ 0.2
NUP88-204ENST00000572290 PCDHB16Q9NRJ7 776 aa16.33■□□□□ 0.2
NUP88-204ENST00000572290 ST3GAL6Q9Y274 331 aa16.33■□□□□ 0.2
NUP88-204ENST00000572290 IGHV2-26A0A0B4J1V2 119 aa16.32■□□□□ 0.2
NUP88-204ENST00000572290 MMP23AO75900 390 aa16.32■□□□□ 0.2
NUP88-204ENST00000572290 CDK2P24941 298 aa16.32■□□□□ 0.2
NUP88-204ENST00000572290 MAPK3P27361 379 aaPredicted RBP16.32■□□□□ 0.2
NUP88-204ENST00000572290 SLC35A2P78381 396 aa16.32■□□□□ 0.2
NUP88-204ENST00000572290 SPHARQ15513 63 aa16.32■□□□□ 0.2
NUP88-204ENST00000572290 LY6EQ16553 131 aa16.32■□□□□ 0.2
NUP88-204ENST00000572290 NHLRC3Q5JS37 347 aa16.32■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 47.6 ms