RNA–Protein interactions for RNA: ENST00000570062.1

VPS39-213, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 842 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-213ENST00000570062 NPTNQ9Y639 398 aa6.77□□□□□ -1.33
VPS39-213ENST00000570062 ALG5Q9Y673 324 aa6.77□□□□□ -1.33
VPS39-213ENST00000570062 ATP23Q9Y6H3 246 aa6.77□□□□□ -1.33
VPS39-213ENST00000570062 ACACAQ13085 2346 aa6.77□□□□□ -1.33
VPS39-213ENST00000570062 PTPN13Q12923 2485 aa6.76□□□□□ -1.33
VPS39-213ENST00000570062 TMEM82A0PJX8 343 aa6.76□□□□□ -1.33
VPS39-213ENST00000570062 WIPF3A6NGB9 483 aa6.76□□□□□ -1.33
VPS39-213ENST00000570062 A6NLC8 198 aa6.76□□□□□ -1.33
VPS39-213ENST00000570062 ABCD4O14678 606 aa6.76□□□□□ -1.33
VPS39-213ENST00000570062 CDIPTO14735 213 aa6.76□□□□□ -1.33
VPS39-213ENST00000570062 ARPC1BO15143 372 aaKnown RBP6.76□□□□□ -1.33
VPS39-213ENST00000570062 SSNA1O43805 119 aa6.76□□□□□ -1.33
VPS39-213ENST00000570062 SSX4O60224 188 aa6.76□□□□□ -1.33
VPS39-213ENST00000570062 RLN1P04808 185 aa6.76□□□□□ -1.33
VPS39-213ENST00000570062 CD55P08174 381 aa6.76□□□□□ -1.33
VPS39-213ENST00000570062 FCGR3AP08637 254 aa6.76□□□□□ -1.33
VPS39-213ENST00000570062 ZNF735P0CB33 412 aa6.76□□□□□ -1.33
VPS39-213ENST00000570062 GSTT2P0CG29 244 aa6.76□□□□□ -1.33
VPS39-213ENST00000570062 PTHLHP12272 177 aa6.76□□□□□ -1.33
VPS39-213ENST00000570062 LMO1P25800 156 aa6.76□□□□□ -1.33
VPS39-213ENST00000570062 S100GP29377 79 aa6.76□□□□□ -1.33
VPS39-213ENST00000570062 NPBWR2P48146 333 aa6.76□□□□□ -1.33
VPS39-213ENST00000570062 ZNF81P51508 661 aa6.76□□□□□ -1.33
VPS39-213ENST00000570062 PAX5Q02548 391 aa6.76□□□□□ -1.33
VPS39-213ENST00000570062 C11orf91Q3C1V1 193 aa6.76□□□□□ -1.33
VPS39-213ENST00000570062 PIGYQ3MUY2 71 aa6.76□□□□□ -1.33
VPS39-213ENST00000570062 SCGB2B2Q4G0G5 96 aa6.76□□□□□ -1.33
VPS39-213ENST00000570062 NCMAPQ5T1S8 102 aa6.76□□□□□ -1.33
VPS39-213ENST00000570062 SIGIRRQ6IA17 410 aa6.76□□□□□ -1.33
VPS39-213ENST00000570062 LIN54Q6MZP7 749 aa6.76□□□□□ -1.33
VPS39-213ENST00000570062 RNF144BQ7Z419 303 aa6.76□□□□□ -1.33
VPS39-213ENST00000570062 PEG10Q86TG7 708 aaKnown RBP6.76□□□□□ -1.33
VPS39-213ENST00000570062 KRTAP19-1Q8IUB9 90 aa6.76□□□□□ -1.33
VPS39-213ENST00000570062 TCTE3Q8IZS6 198 aa6.76□□□□□ -1.33
VPS39-213ENST00000570062 C1orf87Q8N0U7 546 aa6.76□□□□□ -1.33
VPS39-213ENST00000570062 SPICQ8N5J4 248 aa6.76□□□□□ -1.33
VPS39-213ENST00000570062 OR2Z1Q8NG97 314 aa6.76□□□□□ -1.33
VPS39-213ENST00000570062 FAM216AQ8WUB2 273 aa6.76□□□□□ -1.33
VPS39-213ENST00000570062 GIMAP1Q8WWP7 306 aa6.76□□□□□ -1.33
VPS39-213ENST00000570062 NKX3-1Q99801 234 aaPredicted RBP6.76□□□□□ -1.33
VPS39-213ENST00000570062 VRK1Q99986 396 aaPredicted RBP6.76□□□□□ -1.33
VPS39-213ENST00000570062 SYT3Q9BQG1 590 aa6.76□□□□□ -1.33
VPS39-213ENST00000570062 CLEC4MQ9H2X3 399 aaPredicted RBP6.76□□□□□ -1.33
VPS39-213ENST00000570062 NCOR1P1Q9H4R4 102 aa6.76□□□□□ -1.33
VPS39-213ENST00000570062 ZNF701Q9NV72 531 aaPredicted RBP6.76□□□□□ -1.33
VPS39-213ENST00000570062 TAAR3PQ9P1P4 343 aa6.76□□□□□ -1.33
VPS39-213ENST00000570062 OPN4Q9UHM6 478 aa6.76□□□□□ -1.33
VPS39-213ENST00000570062 AK3Q9UIJ7 227 aa6.76□□□□□ -1.33
VPS39-213ENST00000570062 POU2F3Q9UKI9 436 aa6.76□□□□□ -1.33
VPS39-213ENST00000570062 NCOA6Q14686 2063 aaPredicted RBP6.76□□□□□ -1.33
VPS39-213ENST00000570062 A0A0A6YYJ9 748 aa6.75□□□□□ -1.33
VPS39-213ENST00000570062 A0A0B4J2A0 478 aa6.75□□□□□ -1.33
VPS39-213ENST00000570062 MEIS3P1A6NDR6 274 aa6.75□□□□□ -1.33
VPS39-213ENST00000570062 DPRXA6NFQ7 191 aa6.75□□□□□ -1.33
VPS39-213ENST00000570062 TUBAL3A6NHL2 446 aa6.75□□□□□ -1.33
VPS39-213ENST00000570062 TRDCB7Z8K6 153 aa6.75□□□□□ -1.33
VPS39-213ENST00000570062 B9A039 149 aa6.75□□□□□ -1.33
VPS39-213ENST00000570062 ATP6V1G2-DDX39BF2Z307 99 aa6.75□□□□□ -1.33
VPS39-213ENST00000570062 MLNRO43193 412 aa6.75□□□□□ -1.33
VPS39-213ENST00000570062 SYNGR1O43759 233 aa6.75□□□□□ -1.33
VPS39-213ENST00000570062 NAPSAO96009 420 aa6.75□□□□□ -1.33
VPS39-213ENST00000570062 PMP2P02689 132 aa6.75□□□□□ -1.33
VPS39-213ENST00000570062 TK1P04183 234 aa6.75□□□□□ -1.33
VPS39-213ENST00000570062 OR5H8P0DN80 308 aa6.75□□□□□ -1.33
VPS39-213ENST00000570062 ANXA3P12429 323 aa6.75□□□□□ -1.33
VPS39-213ENST00000570062 ZNF44P15621 663 aa6.75□□□□□ -1.33
VPS39-213ENST00000570062 C4BPBP20851 252 aa6.75□□□□□ -1.33
VPS39-213ENST00000570062 GLRA1P23415 457 aa6.75□□□□□ -1.33
VPS39-213ENST00000570062 FPR2P25090 351 aa6.75□□□□□ -1.33
VPS39-213ENST00000570062 APOBEC3AP31941 199 aaPredicted RBP6.75□□□□□ -1.33
VPS39-213ENST00000570062 CCKARP32238 428 aa6.75□□□□□ -1.33
VPS39-213ENST00000570062 SERPINF1P36955 418 aa6.75□□□□□ -1.33
VPS39-213ENST00000570062 UCP3P55916 312 aa6.75□□□□□ -1.33
VPS39-213ENST00000570062 ERVS71-1P61550 626 aa6.75□□□□□ -1.33
VPS39-213ENST00000570062 EFNB3Q15768 340 aa6.75□□□□□ -1.33
VPS39-213ENST00000570062 MPPED2Q15777 294 aa6.75□□□□□ -1.33
VPS39-213ENST00000570062 MICBQ29980 383 aa6.75□□□□□ -1.33
VPS39-213ENST00000570062 C4orf46Q504U0 113 aa6.75□□□□□ -1.33
VPS39-213ENST00000570062 TMEM128Q5BJH2 165 aa6.75□□□□□ -1.33
VPS39-213ENST00000570062 DMRTC1Q5HYR2 192 aa6.75□□□□□ -1.33
VPS39-213ENST00000570062 TMEM255AQ5JRV8 349 aa6.75□□□□□ -1.33
VPS39-213ENST00000570062 ZNF626Q68DY1 528 aa6.75□□□□□ -1.33
VPS39-213ENST00000570062 ALKBH2Q6NS38 261 aa6.75□□□□□ -1.33
VPS39-213ENST00000570062 SLC25A42Q86VD7 318 aa6.75□□□□□ -1.33
VPS39-213ENST00000570062 FAM185AQ8N0U4 392 aa6.75□□□□□ -1.33
VPS39-213ENST00000570062 GVQW1Q8N7I0 195 aa6.75□□□□□ -1.33
VPS39-213ENST00000570062 SUMF2Q8NBJ7 301 aa6.75□□□□□ -1.33
VPS39-213ENST00000570062 TMEM185AQ8NFB2 350 aa6.75□□□□□ -1.33
VPS39-213ENST00000570062 OR5D13Q8NGL4 314 aa6.75□□□□□ -1.33
VPS39-213ENST00000570062 OR4A4PQ8NGN8 299 aa6.75□□□□□ -1.33
VPS39-213ENST00000570062 Q8TCH9 128 aa6.75□□□□□ -1.33
VPS39-213ENST00000570062 NEK7Q8TDX7 302 aa6.75□□□□□ -1.33
VPS39-213ENST00000570062 ZNF431Q8TF32 576 aaPredicted RBP6.75□□□□□ -1.33
VPS39-213ENST00000570062 ELMOD3Q96FG2 381 aa6.75□□□□□ -1.33
VPS39-213ENST00000570062 ZNF486Q96H40 463 aaPredicted RBP6.75□□□□□ -1.33
VPS39-213ENST00000570062 WFIKKN1Q96NZ8 548 aa6.75□□□□□ -1.33
VPS39-213ENST00000570062 SLC6A7Q99884 636 aa6.75□□□□□ -1.33
VPS39-213ENST00000570062 SULT4A1Q9BR01 284 aa6.75□□□□□ -1.33
VPS39-213ENST00000570062 DPCDQ9BVM2 203 aaPredicted RBP6.75□□□□□ -1.33
VPS39-213ENST00000570062 TINAGL1Q9GZM7 467 aaPredicted RBP6.75□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 57.6 ms