RNA–Protein interactions for RNA: ENST00000568784.6

VPS35-210, Transcript of VPS35, retromer complex component, humanhuman

TSL 1 (best)

Gene VPS35, Length 4,017 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-210ENST00000568784 ZNF383Q8NA42 475 aa12.57□□□□□ -0.4
VPS35-210ENST00000568784 LFNGQ8NES3 379 aa12.57□□□□□ -0.4
VPS35-210ENST00000568784 HIST1H2AAQ96QV6 131 aa12.57□□□□□ -0.4
VPS35-210ENST00000568784 PRRG4Q9BZD6 226 aa12.57□□□□□ -0.4
VPS35-210ENST00000568784 OCIAD1Q9NX40 245 aa12.57□□□□□ -0.4
VPS35-210ENST00000568784 DOK5Q9P104 306 aa12.57□□□□□ -0.4
VPS35-210ENST00000568784 STARD10Q9Y365 291 aa12.57□□□□□ -0.4
VPS35-210ENST00000568784 GVINP1Q7Z2Y8 2422 aa12.57□□□□□ -0.4
VPS35-210ENST00000568784 EIF1BO60739 113 aaKnown RBP12.57□□□□□ -0.4
VPS35-210ENST00000568784 CARD18P57730 90 aa12.57□□□□□ -0.4
VPS35-210ENST00000568784 OR2B11Q5JQS5 317 aa12.57□□□□□ -0.4
VPS35-210ENST00000568784 RABEPKQ7Z6M1 372 aa12.57□□□□□ -0.4
VPS35-210ENST00000568784 GPR61Q9BZJ8 451 aa12.57□□□□□ -0.4
VPS35-210ENST00000568784 OR51M1Q9H341 326 aa12.57□□□□□ -0.4
VPS35-210ENST00000568784 IGSF23A1L1A6 192 aa12.56□□□□□ -0.4
VPS35-210ENST00000568784 MPPED1O15442 326 aa12.56□□□□□ -0.4
VPS35-210ENST00000568784 CHST1O43916 411 aa12.56□□□□□ -0.4
VPS35-210ENST00000568784 TRGC2P03986 189 aa12.56□□□□□ -0.4
VPS35-210ENST00000568784 EDN3P14138 238 aa12.56□□□□□ -0.4
VPS35-210ENST00000568784 S100GP29377 79 aa12.56□□□□□ -0.4
VPS35-210ENST00000568784 ALDH3B1P43353 468 aa12.56□□□□□ -0.4
VPS35-210ENST00000568784 IL13RA2Q14627 380 aa12.56□□□□□ -0.4
VPS35-210ENST00000568784 LILRB2Q8N423 598 aa12.56□□□□□ -0.4
VPS35-210ENST00000568784 GGACTQ9BVM4 153 aa12.56□□□□□ -0.4
VPS35-210ENST00000568784 DOCK11Q5JSL3 2073 aa12.56□□□□□ -0.4
VPS35-210ENST00000568784 IGKV1-27A0A075B6S5 117 aa12.56□□□□□ -0.4
VPS35-210ENST00000568784 C9J4A7 227 aa12.56□□□□□ -0.4
VPS35-210ENST00000568784 UBE2CO00762 179 aa12.56□□□□□ -0.4
VPS35-210ENST00000568784 PDCD6O75340 191 aa12.56□□□□□ -0.4
VPS35-210ENST00000568784 LYL1P12980 280 aa12.56□□□□□ -0.4
VPS35-210ENST00000568784 IL15RAQ13261 267 aa12.56□□□□□ -0.4
VPS35-210ENST00000568784 TESK1Q15569 626 aa12.56□□□□□ -0.4
VPS35-210ENST00000568784 IL22RA1Q8N6P7 574 aa12.56□□□□□ -0.4
VPS35-210ENST00000568784 ZNF610Q8N9Z0 462 aa12.56□□□□□ -0.4
VPS35-210ENST00000568784 SPSB1Q96BD6 273 aa12.56□□□□□ -0.4
VPS35-210ENST00000568784 CCDC74BQ96LY2 380 aa12.56□□□□□ -0.4
VPS35-210ENST00000568784 CCL28Q9NRJ3 127 aa12.56□□□□□ -0.4
VPS35-210ENST00000568784 FREM1Q5H8C1 2179 aa12.56□□□□□ -0.4
VPS35-210ENST00000568784 NPIPB13A6NJU9 1138 aa12.56□□□□□ -0.4
VPS35-210ENST00000568784 CEBPZOSA8MTT3 80 aa12.56□□□□□ -0.4
VPS35-210ENST00000568784 NPIPB4C9JG80 1138 aa12.56□□□□□ -0.4
VPS35-210ENST00000568784 GPM6AP51674 278 aa12.56□□□□□ -0.4
VPS35-210ENST00000568784 ZNF92Q03936 586 aa12.56□□□□□ -0.4
VPS35-210ENST00000568784 COMMD1Q8N668 190 aa12.56□□□□□ -0.4
VPS35-210ENST00000568784 SMRP1Q8NCR6 262 aa12.56□□□□□ -0.4
VPS35-210ENST00000568784 METTL1Q9UBP6 276 aaKnown RBP12.56□□□□□ -0.4
VPS35-210ENST00000568784 TUBD1Q9UJT1 453 aa12.56□□□□□ -0.4
VPS35-210ENST00000568784 TMED3Q9Y3Q3 217 aa12.56□□□□□ -0.4
VPS35-210ENST00000568784 SCTP09683 121 aa12.55□□□□□ -0.4
VPS35-210ENST00000568784 FUT3P21217 361 aa12.55□□□□□ -0.4
VPS35-210ENST00000568784 RPS19BP1Q86WX3 136 aaKnown RBP12.55□□□□□ -0.4
VPS35-210ENST00000568784 TMEM252Q8N6L7 170 aa12.55□□□□□ -0.4
VPS35-210ENST00000568784 PLK3Q9H4B4 646 aa12.55□□□□□ -0.4
VPS35-210ENST00000568784 TPRP12270 2363 aaKnown RBP12.55□□□□□ -0.4
VPS35-210ENST00000568784 CELSR3Q9NYQ7 3312 aa12.55□□□□□ -0.4
VPS35-210ENST00000568784 A0A0U1RQV5 110 aa12.55□□□□□ -0.4
VPS35-210ENST00000568784 SHISA7A6NL88 538 aa12.55□□□□□ -0.4
VPS35-210ENST00000568784 SCAF4O95104 1147 aaKnown RBP12.55□□□□□ -0.4
VPS35-210ENST00000568784 GFI1BQ5VTD9 330 aa12.55□□□□□ -0.4
VPS35-210ENST00000568784 ZNF574Q6ZN55 896 aaPredicted RBP12.55□□□□□ -0.4
VPS35-210ENST00000568784 LINC00469Q8N7U9 141 aa12.55□□□□□ -0.4
VPS35-210ENST00000568784 IGKV1-12A0A0C4DH73 117 aa12.55□□□□□ -0.4
VPS35-210ENST00000568784 CEACAM18A8MTB9 384 aa12.55□□□□□ -0.4
VPS35-210ENST00000568784 ZNF705GA8MUZ8 300 aaPredicted RBP12.55□□□□□ -0.4
VPS35-210ENST00000568784 IGKV1D-12P01611 117 aa12.55□□□□□ -0.4
VPS35-210ENST00000568784 AGAP20933 346 aa12.55□□□□□ -0.4
VPS35-210ENST00000568784 SSR4P51571 173 aa12.55□□□□□ -0.4
VPS35-210ENST00000568784 RAB1AP62820 205 aa12.55□□□□□ -0.4
VPS35-210ENST00000568784 BEND4Q6ZU67 534 aa12.55□□□□□ -0.4
VPS35-210ENST00000568784 PLEKHF2Q9H8W4 249 aa12.55□□□□□ -0.4
VPS35-210ENST00000568784 P04436 131 aa12.54□□□□□ -0.4
VPS35-210ENST00000568784 MMP9P14780 707 aa12.54□□□□□ -0.4
VPS35-210ENST00000568784 ADIRFQ15847 76 aa12.54□□□□□ -0.4
VPS35-210ENST00000568784 WIPI1Q5MNZ9 446 aaPredicted RBP12.54□□□□□ -0.4
VPS35-210ENST00000568784 ZNF468Q5VIY5 522 aaPredicted RBP12.54□□□□□ -0.4
VPS35-210ENST00000568784 OR8G2PQ6IF36 304 aa12.54□□□□□ -0.4
VPS35-210ENST00000568784 LHFPL2Q6ZUX7 228 aa12.54□□□□□ -0.4
VPS35-210ENST00000568784 MRPL21Q7Z2W9 205 aaKnown RBP12.54□□□□□ -0.4
VPS35-210ENST00000568784 RHBDD1Q8TEB9 315 aa12.54□□□□□ -0.4
VPS35-210ENST00000568784 RSG1Q9BU20 258 aa12.54□□□□□ -0.4
VPS35-210ENST00000568784 GFOD1Q9NXC2 390 aa12.54□□□□□ -0.4
VPS35-210ENST00000568784 IL36RNQ9UBH0 155 aa12.54□□□□□ -0.4
VPS35-210ENST00000568784 GAB2Q9UQC2 676 aa12.54□□□□□ -0.4
VPS35-210ENST00000568784 ARHGAP21Q5T5U3 1957 aa12.54□□□□□ -0.4
VPS35-210ENST00000568784 DOCK10Q96BY6 2186 aa12.54□□□□□ -0.4
VPS35-210ENST00000568784 CALHM1Q8IU99 346 aa12.54□□□□□ -0.4
VPS35-210ENST00000568784 OR56B2PQ8NGI1 322 aa12.54□□□□□ -0.4
VPS35-210ENST00000568784 NTNG2Q96CW9 530 aa12.54□□□□□ -0.4
VPS35-210ENST00000568784 CDPF1Q6NVV7 123 aa12.54□□□□□ -0.4
VPS35-210ENST00000568784 ZNF880Q6PDB4 577 aa12.54□□□□□ -0.4
VPS35-210ENST00000568784 WDR5BQ86VZ2 330 aa12.54□□□□□ -0.4
VPS35-210ENST00000568784 ZNF488Q96MN9 340 aa12.54□□□□□ -0.4
VPS35-210ENST00000568784 FOXB1Q99853 325 aa12.54□□□□□ -0.4
VPS35-210ENST00000568784 TM2D1Q9BX74 207 aa12.54□□□□□ -0.4
VPS35-210ENST00000568784 SLC34A2O95436 690 aa12.53□□□□□ -0.4
VPS35-210ENST00000568784 METTL15P1P0C7V9 234 aa12.53□□□□□ -0.4
VPS35-210ENST00000568784 PTGDSP41222 190 aa12.53□□□□□ -0.4
VPS35-210ENST00000568784 TLE4Q04727 773 aa12.53□□□□□ -0.4
VPS35-210ENST00000568784 HGFACQ04756 655 aa12.53□□□□□ -0.4
VPS35-210ENST00000568784 TCEAL6Q6IPX3 200 aa12.53□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms