RNA–Protein interactions for RNA: ENST00000568612.5

VPS35-208, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 697 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-208ENST00000568612 IAH1Q2TAA2 248 aaPredicted RBP2.79□□□□□ -1.96
VPS35-208ENST00000568612 SLC25A52Q3SY17 297 aa2.79□□□□□ -1.96
VPS35-208ENST00000568612 TDRG1Q3Y452 100 aa2.79□□□□□ -1.96
VPS35-208ENST00000568612 PLK5Q496M5 336 aa2.79□□□□□ -1.96
VPS35-208ENST00000568612 TMEM41BQ5BJD5 291 aa2.79□□□□□ -1.96
VPS35-208ENST00000568612 PIK3CD-AS1Q5SR53 167 aa2.79□□□□□ -1.96
VPS35-208ENST00000568612 CPTPQ5TA50 214 aa2.79□□□□□ -1.96
VPS35-208ENST00000568612 LYPLAL1Q5VWZ2 237 aa2.79□□□□□ -1.96
VPS35-208ENST00000568612 CST9LP1Q5W188 147 aa2.79□□□□□ -1.96
VPS35-208ENST00000568612 HBMQ6B0K9 141 aa2.79□□□□□ -1.96
VPS35-208ENST00000568612 UFSP1Q6NVU6 142 aa2.79□□□□□ -1.96
VPS35-208ENST00000568612 RGMBQ6NW40 437 aa2.79□□□□□ -1.96
VPS35-208ENST00000568612 NCEH1Q6PIU2 408 aa2.79□□□□□ -1.96
VPS35-208ENST00000568612 FOXI2Q6ZQN5 318 aa2.79□□□□□ -1.96
VPS35-208ENST00000568612 RBPMS2Q6ZRY4 209 aaKnown RBP2.79□□□□□ -1.96
VPS35-208ENST00000568612 COX15Q7KZN9 410 aa2.79□□□□□ -1.96
VPS35-208ENST00000568612 BHLHA9Q7RTU4 235 aa2.79□□□□□ -1.96
VPS35-208ENST00000568612 MDGA2Q7Z553 956 aa2.79□□□□□ -1.96
VPS35-208ENST00000568612 KLHDC8AQ8IYD2 350 aa2.79□□□□□ -1.96
VPS35-208ENST00000568612 PGBD5Q8N414 524 aa2.79□□□□□ -1.96
VPS35-208ENST00000568612 PNKDQ8N490 385 aa2.79□□□□□ -1.96
VPS35-208ENST00000568612 PAQR4Q8N4S7 273 aaPredicted RBP2.79□□□□□ -1.96
VPS35-208ENST00000568612 OR4N2Q8NGD1 307 aa2.79□□□□□ -1.96
VPS35-208ENST00000568612 OR4D11Q8NGI4 311 aa2.79□□□□□ -1.96
VPS35-208ENST00000568612 OR51A2Q8NGJ7 313 aa2.79□□□□□ -1.96
VPS35-208ENST00000568612 OR2Y1Q8NGV0 311 aa2.79□□□□□ -1.96
VPS35-208ENST00000568612 OR6K2Q8NGY2 324 aa2.79□□□□□ -1.96
VPS35-208ENST00000568612 OR2T27Q8NH04 317 aa2.79□□□□□ -1.96
VPS35-208ENST00000568612 OR5AK2Q8NH90 309 aa2.79□□□□□ -1.96
VPS35-208ENST00000568612 KIR2DL5BQ8NHK3 375 aa2.79□□□□□ -1.96
VPS35-208ENST00000568612 HAVCR2Q8TDQ0 301 aa2.79□□□□□ -1.96
VPS35-208ENST00000568612 VN1R17PQ8TDU5 208 aa2.79□□□□□ -1.96
VPS35-208ENST00000568612 C15orf40Q8WUR7 153 aa2.79□□□□□ -1.96
VPS35-208ENST00000568612 BLNKQ8WV28 456 aa2.79□□□□□ -1.96
VPS35-208ENST00000568612 SMIM4Q8WVI0 70 aa2.79□□□□□ -1.96
VPS35-208ENST00000568612 IGSF8Q969P0 613 aa2.79□□□□□ -1.96
VPS35-208ENST00000568612 WBP2Q969T9 261 aa2.79□□□□□ -1.96
VPS35-208ENST00000568612 PTX4Q96A99 478 aa2.79□□□□□ -1.96
VPS35-208ENST00000568612 MS4A6EQ96DS6 147 aa2.79□□□□□ -1.96
VPS35-208ENST00000568612 RTP4Q96DX8 246 aa2.79□□□□□ -1.96
VPS35-208ENST00000568612 PERPQ96FX8 193 aa2.79□□□□□ -1.96
VPS35-208ENST00000568612 OR10C1Q96KK4 312 aa2.79□□□□□ -1.96
VPS35-208ENST00000568612 ZNF582Q96NG8 517 aaPredicted RBP2.79□□□□□ -1.96
VPS35-208ENST00000568612 RCHY1Q96PM5 261 aa2.79□□□□□ -1.96
VPS35-208ENST00000568612 YPEL2Q96QA6 119 aa2.79□□□□□ -1.96
VPS35-208ENST00000568612 IMMP2LQ96T52 175 aa2.79□□□□□ -1.96
VPS35-208ENST00000568612 ST6GALNAC5Q9BVH7 336 aa2.79□□□□□ -1.96
VPS35-208ENST00000568612 FAIM2Q9BWQ8 316 aa2.79□□□□□ -1.96
VPS35-208ENST00000568612 MAP1LC3CQ9BXW4 147 aa2.79□□□□□ -1.96
VPS35-208ENST00000568612 CTDSP1Q9GZU7 261 aa2.79□□□□□ -1.96
VPS35-208ENST00000568612 NXF5Q9H1B4 397 aaKnown RBP2.79□□□□□ -1.96
VPS35-208ENST00000568612 SLC25A18Q9H1K4 315 aa2.79□□□□□ -1.96
VPS35-208ENST00000568612 S1PR5Q9H228 398 aa2.79□□□□□ -1.96
VPS35-208ENST00000568612 SMDT1Q9H4I9 107 aa2.79□□□□□ -1.96
VPS35-208ENST00000568612 NMRAL1Q9HBL8 299 aa2.79□□□□□ -1.96
VPS35-208ENST00000568612 SLC52A3Q9NQ40 469 aa2.79□□□□□ -1.96
VPS35-208ENST00000568612 SDR39U1Q9NRG7 319 aaPredicted RBP2.79□□□□□ -1.96
VPS35-208ENST00000568612 AIG1Q9NVV5 245 aa2.79□□□□□ -1.96
VPS35-208ENST00000568612 BABAM1Q9NWV8 329 aa2.79□□□□□ -1.96
VPS35-208ENST00000568612 THYN1Q9P016 225 aa2.79□□□□□ -1.96
VPS35-208ENST00000568612 HSPB8Q9UJY1 196 aa2.79□□□□□ -1.96
VPS35-208ENST00000568612 FBXW11Q9UKB1 542 aa2.79□□□□□ -1.96
VPS35-208ENST00000568612 BOKQ9UMX3 212 aaPredicted RBP2.79□□□□□ -1.96
VPS35-208ENST00000568612 GPR132Q9UNW8 380 aa2.79□□□□□ -1.96
VPS35-208ENST00000568612 SIGLEC7Q9Y286 467 aa2.79□□□□□ -1.96
VPS35-208ENST00000568612 STYXL1Q9Y6J8 313 aa2.79□□□□□ -1.96
VPS35-208ENST00000568612 ARFGEF1Q9Y6D6 1849 aa2.79□□□□□ -1.96
VPS35-208ENST00000568612 MYO18AQ92614 2054 aaKnown RBP2.78□□□□□ -1.96
VPS35-208ENST00000568612 MIA3Q5JRA6 1907 aa2.78□□□□□ -1.96
VPS35-208ENST00000568612 ALPK3Q96L96 1907 aa2.78□□□□□ -1.96
VPS35-208ENST00000568612 A0A087WX48 190 aa2.78□□□□□ -1.96
VPS35-208ENST00000568612 A0A0G2JMM0 328 aa2.78□□□□□ -1.96
VPS35-208ENST00000568612 A0A1W2PPB8 328 aa2.78□□□□□ -1.96
VPS35-208ENST00000568612 A0A1W2PQM1 296 aa2.78□□□□□ -1.96
VPS35-208ENST00000568612 IGLC7A0M8Q6 106 aa2.78□□□□□ -1.96
VPS35-208ENST00000568612 PRSS37A4D1T9 235 aa2.78□□□□□ -1.96
VPS35-208ENST00000568612 FAM90A18PA6NE21 464 aa2.78□□□□□ -1.96
VPS35-208ENST00000568612 FAM90A16PA6NEW6 464 aa2.78□□□□□ -1.96
VPS35-208ENST00000568612 ANTXRLA6NF34 631 aa2.78□□□□□ -1.96
VPS35-208ENST00000568612 ZNF860A6NHJ4 632 aa2.78□□□□□ -1.96
VPS35-208ENST00000568612 FAM90A9PA6NNJ1 464 aa2.78□□□□□ -1.96
VPS35-208ENST00000568612 ZNF705FA8MVS1 300 aaPredicted RBP2.78□□□□□ -1.96
VPS35-208ENST00000568612 KIR3DP1A8MWS1 328 aa2.78□□□□□ -1.96
VPS35-208ENST00000568612 FAM90A5PA8MXJ8 464 aa2.78□□□□□ -1.96
VPS35-208ENST00000568612 B4DEV8 164 aa2.78□□□□□ -1.96
VPS35-208ENST00000568612 ANKRD66B4E2M5 251 aa2.78□□□□□ -1.96
VPS35-208ENST00000568612 HHLA1C9JL84 531 aa2.78□□□□□ -1.96
VPS35-208ENST00000568612 C9JVG2 144 aa2.78□□□□□ -1.96
VPS35-208ENST00000568612 F5H768 121 aa2.78□□□□□ -1.96
VPS35-208ENST00000568612 GABARAPH6UMI1 98 aa2.78□□□□□ -1.96
VPS35-208ENST00000568612 DCTN6O00399 190 aa2.78□□□□□ -1.96
VPS35-208ENST00000568612 XKRYO14609 159 aa2.78□□□□□ -1.96
VPS35-208ENST00000568612 TAX1BP3O14907 124 aa2.78□□□□□ -1.96
VPS35-208ENST00000568612 RS1O15537 224 aa2.78□□□□□ -1.96
VPS35-208ENST00000568612 P2RX6O15547 441 aa2.78□□□□□ -1.96
VPS35-208ENST00000568612 PLPP2O43688 288 aa2.78□□□□□ -1.96
VPS35-208ENST00000568612 NDUFB6O95139 128 aa2.78□□□□□ -1.96
VPS35-208ENST00000568612 KLF8O95600 359 aaPredicted RBP2.78□□□□□ -1.96
VPS35-208ENST00000568612 IFNA1P01562 189 aa2.78□□□□□ -1.96
VPS35-208ENST00000568612 TYMSP04818 313 aa2.78□□□□□ -1.96
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms