RNA–Protein interactions for RNA: ENST00000567804.1

CLN3-228, Transcript of CLN3, battenin, humanhuman

TSL 4

Gene CLN3, Length 557 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-228ENST00000567804 CAPSLQ8WWF8 208 aa11.91□□□□□ -0.5
CLN3-228ENST00000567804 CORO2AQ92828 525 aa11.91□□□□□ -0.5
CLN3-228ENST00000567804 RFKQ969G6 155 aa11.91□□□□□ -0.5
CLN3-228ENST00000567804 MYDGFQ969H8 173 aa11.91□□□□□ -0.5
CLN3-228ENST00000567804 RFT1Q96AA3 541 aa11.91□□□□□ -0.5
CLN3-228ENST00000567804 RBM14Q96PK6 669 aaKnown RBP11.91□□□□□ -0.5
CLN3-228ENST00000567804 COMMD4Q9H0A8 199 aa11.91□□□□□ -0.5
CLN3-228ENST00000567804 ZNF286AQ9HBT8 521 aa11.91□□□□□ -0.5
CLN3-228ENST00000567804 FAM118AQ9NWS6 357 aa11.91□□□□□ -0.5
CLN3-228ENST00000567804 TAS2R3Q9NYW6 316 aa11.91□□□□□ -0.5
CLN3-228ENST00000567804 GMPPBQ9Y5P6 360 aa11.91□□□□□ -0.5
CLN3-228ENST00000567804 TSSC4Q9Y5U2 329 aaPredicted RBP11.91□□□□□ -0.5
CLN3-228ENST00000567804 TCRBV4S1A1TA0A5B7 111 aa11.9□□□□□ -0.5
CLN3-228ENST00000567804 FUOMA2VDF0 154 aa11.9□□□□□ -0.5
CLN3-228ENST00000567804 SH2D1BO14796 132 aa11.9□□□□□ -0.5
CLN3-228ENST00000567804 KDM4BO94953 1096 aa11.9□□□□□ -0.5
CLN3-228ENST00000567804 MPIG6BO95866 241 aa11.9□□□□□ -0.5
CLN3-228ENST00000567804 PF4P02776 101 aa11.9□□□□□ -0.5
CLN3-228ENST00000567804 AMY1AP04745 511 aa11.9□□□□□ -0.5
CLN3-228ENST00000567804 AMY2AP04746 511 aa11.9□□□□□ -0.5
CLN3-228ENST00000567804 ISG15P05161 165 aa11.9□□□□□ -0.5
CLN3-228ENST00000567804 GLIPR1P48060 266 aa11.9□□□□□ -0.5
CLN3-228ENST00000567804 NANOS3P60323 173 aaKnown RBP11.9□□□□□ -0.5
CLN3-228ENST00000567804 HLA-DRB5Q30154 266 aa11.9□□□□□ -0.5
CLN3-228ENST00000567804 SLC25A30Q5SVS4 291 aa11.9□□□□□ -0.5
CLN3-228ENST00000567804 OR4X2Q8NGF9 303 aa11.9□□□□□ -0.5
CLN3-228ENST00000567804 TRUB1Q8WWH5 349 aaKnown RBP11.9□□□□□ -0.5
CLN3-228ENST00000567804 FRRS1LQ9P0K9 344 aa11.9□□□□□ -0.5
CLN3-228ENST00000567804 HHLA2Q9UM44 414 aa11.9□□□□□ -0.5
CLN3-228ENST00000567804 LOC100130705A0A1B0GUX0 176 aa11.89□□□□□ -0.51
CLN3-228ENST00000567804 ODAMA1E959 279 aa11.89□□□□□ -0.51
CLN3-228ENST00000567804 ERICH4A6NGS2 130 aa11.89□□□□□ -0.51
CLN3-228ENST00000567804 SH2D7A6NKC9 451 aaPredicted RBP11.89□□□□□ -0.51
CLN3-228ENST00000567804 K7EIL1 84 aa11.89□□□□□ -0.51
CLN3-228ENST00000567804 CSN2P05814 226 aa11.89□□□□□ -0.51
CLN3-228ENST00000567804 ZNF44P15621 663 aa11.89□□□□□ -0.51
CLN3-228ENST00000567804 CEACAM3P40198 252 aa11.89□□□□□ -0.51
CLN3-228ENST00000567804 PTGFRP43088 359 aa11.89□□□□□ -0.51
CLN3-228ENST00000567804 SLC35A2P78381 396 aa11.89□□□□□ -0.51
CLN3-228ENST00000567804 TPTE2P1Q5T6R2 138 aa11.89□□□□□ -0.51
CLN3-228ENST00000567804 FDX2Q6P4F2 183 aa11.89□□□□□ -0.51
CLN3-228ENST00000567804 C10orf99Q6UWK7 81 aa11.89□□□□□ -0.51
CLN3-228ENST00000567804 RNF144BQ7Z419 303 aa11.89□□□□□ -0.51
CLN3-228ENST00000567804 OR5D18Q8NGL1 313 aa11.89□□□□□ -0.51
CLN3-228ENST00000567804 OR10AC1Q8NH08 325 aa11.89□□□□□ -0.51
CLN3-228ENST00000567804 CREB3L1Q96BA8 519 aa11.89□□□□□ -0.51
CLN3-228ENST00000567804 RNFT2Q96EX2 444 aa11.89□□□□□ -0.51
CLN3-228ENST00000567804 COQ2Q96H96 371 aa11.89□□□□□ -0.51
CLN3-228ENST00000567804 SPACA5Q96QH8 159 aa11.89□□□□□ -0.51
CLN3-228ENST00000567804 PCDHGB5Q9Y5G0 923 aa11.89□□□□□ -0.51
CLN3-228ENST00000567804 A0A087X0M5 115 aa11.88□□□□□ -0.51
CLN3-228ENST00000567804 A0A1B0GX30 115 aa11.88□□□□□ -0.51
CLN3-228ENST00000567804 LY6LH3BQJ8 138 aa11.88□□□□□ -0.51
CLN3-228ENST00000567804 BUB1B-PAK6H3BSN5 160 aa11.88□□□□□ -0.51
CLN3-228ENST00000567804 J3QRE1 110 aa11.88□□□□□ -0.51
CLN3-228ENST00000567804 TOR1AO14656 332 aa11.88□□□□□ -0.51
CLN3-228ENST00000567804 MT-ND2P03891 347 aa11.88□□□□□ -0.51
CLN3-228ENST00000567804 OCM2P0CE71 109 aa11.88□□□□□ -0.51
CLN3-228ENST00000567804 OCMP0CE72 109 aaPredicted RBP11.88□□□□□ -0.51
CLN3-228ENST00000567804 CCR9P51686 369 aa11.88□□□□□ -0.51
CLN3-228ENST00000567804 KRBOX4Q5JUW0 171 aa11.88□□□□□ -0.51
CLN3-228ENST00000567804 Q6P435 159 aa11.88□□□□□ -0.51
CLN3-228ENST00000567804 KCTD20Q7Z5Y7 419 aa11.88□□□□□ -0.51
CLN3-228ENST00000567804 OR51A4Q8NGJ6 313 aa11.88□□□□□ -0.51
CLN3-228ENST00000567804 OR13C9Q8NGT0 318 aa11.88□□□□□ -0.51
CLN3-228ENST00000567804 RHOXF1Q8NHV9 184 aa11.88□□□□□ -0.51
CLN3-228ENST00000567804 APH1BQ8WW43 257 aa11.88□□□□□ -0.51
CLN3-228ENST00000567804 RCC1LQ96I51 464 aaKnown RBP11.88□□□□□ -0.51
CLN3-228ENST00000567804 RHOFQ9HBH0 211 aa11.88□□□□□ -0.51
CLN3-228ENST00000567804 INPP5EQ9NRR6 644 aa11.88□□□□□ -0.51
CLN3-228ENST00000567804 SMPD3Q9NY59 655 aaPredicted RBP11.88□□□□□ -0.51
CLN3-228ENST00000567804 NKX1-2Q9UD57 310 aaPredicted RBP11.88□□□□□ -0.51
CLN3-228ENST00000567804 ZNF729A6NN14 1252 aaPredicted RBP11.87□□□□□ -0.51
CLN3-228ENST00000567804 OOSP1A8MZH6 123 aa11.87□□□□□ -0.51
CLN3-228ENST00000567804 SLC33A1O00400 549 aaPredicted RBP11.87□□□□□ -0.51
CLN3-228ENST00000567804 SLC16A6O15403 523 aa11.87□□□□□ -0.51
CLN3-228ENST00000567804 DUS4LO95620 317 aaKnown RBP11.87□□□□□ -0.51
CLN3-228ENST00000567804 CLIC3O95833 236 aa11.87□□□□□ -0.51
CLN3-228ENST00000567804 HTR1AP08908 422 aa11.87□□□□□ -0.51
CLN3-228ENST00000567804 SCN1BQ07699 218 aa11.87□□□□□ -0.51
CLN3-228ENST00000567804 ATXN7L3Q14CW9 347 aaPredicted RBP11.87□□□□□ -0.51
CLN3-228ENST00000567804 C17orf58Q2M2W7 97 aa11.87□□□□□ -0.51
CLN3-228ENST00000567804 KHDC1LQ5JSQ8 128 aa11.87□□□□□ -0.51
CLN3-228ENST00000567804 UTF1Q5T230 341 aa11.87□□□□□ -0.51
CLN3-228ENST00000567804 MEDAGQ5VYS4 303 aa11.87□□□□□ -0.51
CLN3-228ENST00000567804 CCDC144NLQ6NUI1 221 aa11.87□□□□□ -0.51
CLN3-228ENST00000567804 SAXO1Q8IYX7 474 aa11.87□□□□□ -0.51
CLN3-228ENST00000567804 CHST4Q8NCG5 386 aa11.87□□□□□ -0.51
CLN3-228ENST00000567804 OR4D6Q8NGJ1 314 aa11.87□□□□□ -0.51
CLN3-228ENST00000567804 OR13C3Q8NGS6 347 aa11.87□□□□□ -0.51
CLN3-228ENST00000567804 NEK6Q9HC98 313 aa11.87□□□□□ -0.51
CLN3-228ENST00000567804 AMBNQ9NP70 447 aa11.87□□□□□ -0.51
CLN3-228ENST00000567804 ING3Q9NXR8 418 aa11.87□□□□□ -0.51
CLN3-228ENST00000567804 DAPL1A0PJW8 107 aa11.86□□□□□ -0.51
CLN3-228ENST00000567804 OR4C45A6NMZ5 311 aa11.86□□□□□ -0.51
CLN3-228ENST00000567804 M0QZK8 103 aa11.86□□□□□ -0.51
CLN3-228ENST00000567804 DBTP11182 482 aaKnown RBP11.86□□□□□ -0.51
CLN3-228ENST00000567804 MNDAP41218 407 aa11.86□□□□□ -0.51
CLN3-228ENST00000567804 PRRX1P54821 245 aa11.86□□□□□ -0.51
CLN3-228ENST00000567804 KRTAP10-11P60412 298 aa11.86□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 46.6 ms