RNA–Protein interactions for RNA: ENST00000566472.1

CLN3-223, Transcript of CLN3, battenin, humanhuman

TSL 4

Gene CLN3, Length 551 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-223ENST00000566472 ZNF565Q8N9K5 539 aa5.36□□□□□ -1.55
CLN3-223ENST00000566472 CLEC18CQ8NCF0 446 aa5.36□□□□□ -1.55
CLN3-223ENST00000566472 BHLHE23Q8NDY6 225 aa5.36□□□□□ -1.55
CLN3-223ENST00000566472 OR4D5Q8NGN0 318 aa5.36□□□□□ -1.55
CLN3-223ENST00000566472 OR4A4PQ8NGN8 299 aa5.36□□□□□ -1.55
CLN3-223ENST00000566472 SNIP1Q8TAD8 396 aaKnown RBP5.36□□□□□ -1.55
CLN3-223ENST00000566472 GLYATL2Q8WU03 294 aa5.36□□□□□ -1.55
CLN3-223ENST00000566472 DYRK2Q92630 601 aa5.36□□□□□ -1.55
CLN3-223ENST00000566472 SLAMF9Q96A28 289 aa5.36□□□□□ -1.55
CLN3-223ENST00000566472 LRRC46Q96FV0 321 aa5.36□□□□□ -1.55
CLN3-223ENST00000566472 MICU1Q9BPX6 476 aa5.36□□□□□ -1.55
CLN3-223ENST00000566472 RTL8AQ9BWD3 113 aa5.36□□□□□ -1.55
CLN3-223ENST00000566472 NKX6-2Q9C056 277 aaPredicted RBP5.36□□□□□ -1.55
CLN3-223ENST00000566472 TMEM222Q9H0R3 208 aa5.36□□□□□ -1.55
CLN3-223ENST00000566472 TUBG2Q9NRH3 451 aa5.36□□□□□ -1.55
CLN3-223ENST00000566472 TREM2Q9NZC2 230 aa5.36□□□□□ -1.55
CLN3-223ENST00000566472 ZNF581Q9P0T4 197 aa5.36□□□□□ -1.55
CLN3-223ENST00000566472 ZNF629Q9UEG4 869 aaPredicted RBP5.36□□□□□ -1.55
CLN3-223ENST00000566472 FBXL17Q9UF56 701 aa5.36□□□□□ -1.55
CLN3-223ENST00000566472 PRSS50Q9UI38 385 aa5.36□□□□□ -1.55
CLN3-223ENST00000566472 POLDIP2Q9Y2S7 368 aa5.36□□□□□ -1.55
CLN3-223ENST00000566472 STRAPQ9Y3F4 350 aaKnown RBP5.36□□□□□ -1.55
CLN3-223ENST00000566472 LSM5Q9Y4Y9 91 aaKnown RBP5.36□□□□□ -1.55
CLN3-223ENST00000566472 LIPGQ9Y5X9 500 aa5.36□□□□□ -1.55
CLN3-223ENST00000566472 ATP23Q9Y6H3 246 aa5.36□□□□□ -1.55
CLN3-223ENST00000566472 REV3LO60673 3130 aa5.35□□□□□ -1.55
CLN3-223ENST00000566472 CACNA1CQ13936 2221 aa5.35□□□□□ -1.55
CLN3-223ENST00000566472 FAM221AA4D161 298 aa5.35□□□□□ -1.55
CLN3-223ENST00000566472 ARGFXA6NJG6 315 aa5.35□□□□□ -1.55
CLN3-223ENST00000566472 TMEM210A6NLX4 147 aa5.35□□□□□ -1.55
CLN3-223ENST00000566472 H0Y980 276 aa5.35□□□□□ -1.55
CLN3-223ENST00000566472 ABCD4O14678 606 aa5.35□□□□□ -1.55
CLN3-223ENST00000566472 PHF1O43189 567 aaPredicted RBP5.35□□□□□ -1.55
CLN3-223ENST00000566472 FBXO24O75426 580 aa5.35□□□□□ -1.55
CLN3-223ENST00000566472 SLC34A2O95436 690 aa5.35□□□□□ -1.55
CLN3-223ENST00000566472 SCGB1D2O95969 90 aa5.35□□□□□ -1.55
CLN3-223ENST00000566472 MBPP02686 304 aaPredicted RBP5.35□□□□□ -1.55
CLN3-223ENST00000566472 ACAA1P09110 424 aaPredicted RBP5.35□□□□□ -1.55
CLN3-223ENST00000566472 PVALBP20472 110 aaPredicted RBP5.35□□□□□ -1.55
CLN3-223ENST00000566472 CCNOP22674 350 aa5.35□□□□□ -1.55
CLN3-223ENST00000566472 UCP1P25874 307 aa5.35□□□□□ -1.55
CLN3-223ENST00000566472 WNT5AP41221 380 aa5.35□□□□□ -1.55
CLN3-223ENST00000566472 CAV2P51636 162 aa5.35□□□□□ -1.55
CLN3-223ENST00000566472 NUBP1P53384 320 aa5.35□□□□□ -1.55
CLN3-223ENST00000566472 F2RL1P55085 397 aa5.35□□□□□ -1.55
CLN3-223ENST00000566472 PRSS12P56730 875 aa5.35□□□□□ -1.55
CLN3-223ENST00000566472 TMEM33P57088 247 aa5.35□□□□□ -1.55
CLN3-223ENST00000566472 DEFA5Q01523 94 aa5.35□□□□□ -1.55
CLN3-223ENST00000566472 TGFBR3Q03167 851 aa5.35□□□□□ -1.55
CLN3-223ENST00000566472 SPEM2Q0P670 501 aa5.35□□□□□ -1.55
CLN3-223ENST00000566472 BTN1A1Q13410 526 aa5.35□□□□□ -1.55
CLN3-223ENST00000566472 GNMTQ14749 295 aa5.35□□□□□ -1.55
CLN3-223ENST00000566472 TGIF1Q15583 401 aa5.35□□□□□ -1.55
CLN3-223ENST00000566472 PHLDA2Q53GA4 152 aa5.35□□□□□ -1.55
CLN3-223ENST00000566472 PXDC1Q5TGL8 231 aa5.35□□□□□ -1.55
CLN3-223ENST00000566472 C9orf135Q5VTT2 229 aa5.35□□□□□ -1.55
CLN3-223ENST00000566472 OR2A2Q6IF42 318 aa5.35□□□□□ -1.55
CLN3-223ENST00000566472 IGF2-ASQ6U949 168 aa5.35□□□□□ -1.55
CLN3-223ENST00000566472 IGFL2Q6UWQ7 119 aa5.35□□□□□ -1.55
CLN3-223ENST00000566472 BTNL8Q6UX41 500 aa5.35□□□□□ -1.55
CLN3-223ENST00000566472 P4HA3Q7Z4N8 544 aa5.35□□□□□ -1.55
CLN3-223ENST00000566472 LYZL2Q7Z4W2 148 aa5.35□□□□□ -1.55
CLN3-223ENST00000566472 PNPLA5Q7Z6Z6 429 aaPredicted RBP5.35□□□□□ -1.55
CLN3-223ENST00000566472 PIP4P1Q86T03 277 aa5.35□□□□□ -1.55
CLN3-223ENST00000566472 CMTM1Q8IZ96 169 aa5.35□□□□□ -1.55
CLN3-223ENST00000566472 FAM58AQ8N1B3 248 aa5.35□□□□□ -1.55
CLN3-223ENST00000566472 C1orf162Q8NEQ5 155 aaPredicted RBP5.35□□□□□ -1.55
CLN3-223ENST00000566472 OR5D13Q8NGL4 314 aa5.35□□□□□ -1.55
CLN3-223ENST00000566472 LYPD6BQ8NI32 183 aa5.35□□□□□ -1.55
CLN3-223ENST00000566472 MRPL30Q8TCC3 161 aaKnown RBP5.35□□□□□ -1.55
CLN3-223ENST00000566472 NARS2Q96I59 477 aaKnown RBP5.35□□□□□ -1.55
CLN3-223ENST00000566472 TSNAXQ99598 290 aaKnown RBP5.35□□□□□ -1.55
CLN3-223ENST00000566472 GINS3Q9BRX5 216 aa5.35□□□□□ -1.55
CLN3-223ENST00000566472 SEC11CQ9BY50 192 aa5.35□□□□□ -1.55
CLN3-223ENST00000566472 OR51I2Q9H344 312 aa5.35□□□□□ -1.55
CLN3-223ENST00000566472 C11orf1Q9H5F2 150 aa5.35□□□□□ -1.55
CLN3-223ENST00000566472 CDH20Q9HBT6 801 aa5.35□□□□□ -1.55
CLN3-223ENST00000566472 OR2S2Q9NQN1 319 aa5.35□□□□□ -1.55
CLN3-223ENST00000566472 FAM212BQ9NTI7 297 aaPredicted RBP5.35□□□□□ -1.55
CLN3-223ENST00000566472 MTCH1Q9NZJ7 389 aa5.35□□□□□ -1.55
CLN3-223ENST00000566472 CRIM1Q9NZV1 1036 aa5.35□□□□□ -1.55
CLN3-223ENST00000566472 SPRR3Q9UBC9 169 aa5.35□□□□□ -1.55
CLN3-223ENST00000566472 CLCF1Q9UBD9 225 aa5.35□□□□□ -1.55
CLN3-223ENST00000566472 LAMA2P24043 3122 aaKnown RBP5.34□□□□□ -1.55
CLN3-223ENST00000566472 CDRT15L2A8MXV6 281 aa5.34□□□□□ -1.55
CLN3-223ENST00000566472 IQCF6A8MYZ5 107 aa5.34□□□□□ -1.55
CLN3-223ENST00000566472 DNASE2O00115 360 aaPredicted RBP5.34□□□□□ -1.55
CLN3-223ENST00000566472 AQP7O14520 342 aa5.34□□□□□ -1.55
CLN3-223ENST00000566472 KCNAB3O43448 404 aa5.34□□□□□ -1.55
CLN3-223ENST00000566472 GALR2O43603 387 aaPredicted RBP5.34□□□□□ -1.55
CLN3-223ENST00000566472 SYNGR1O43759 233 aa5.34□□□□□ -1.55
CLN3-223ENST00000566472 SMPD2O60906 423 aa5.34□□□□□ -1.55
CLN3-223ENST00000566472 PITX3O75364 302 aa5.34□□□□□ -1.55
CLN3-223ENST00000566472 MED6O75586 246 aa5.34□□□□□ -1.55
CLN3-223ENST00000566472 SNAPINO95295 136 aa5.34□□□□□ -1.55
CLN3-223ENST00000566472 NGFP01138 241 aa5.34□□□□□ -1.55
CLN3-223ENST00000566472 SLC25A6P12236 298 aa5.34□□□□□ -1.55
CLN3-223ENST00000566472 CCL2P13500 99 aa5.34□□□□□ -1.55
CLN3-223ENST00000566472 RAC2P15153 192 aa5.34□□□□□ -1.55
CLN3-223ENST00000566472 ZNF14P17017 642 aaPredicted RBP5.34□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 38.8 ms