RNA–Protein interactions for RNA: ENST00000563112.1

CLK3-210, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 665 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-210ENST00000563112 AESQ08117 197 aa13.62□□□□□ -0.23
CLK3-210ENST00000563112 IL18R1Q13478 541 aa13.62□□□□□ -0.23
CLK3-210ENST00000563112 CDK5R1Q15078 307 aa13.62□□□□□ -0.23
CLK3-210ENST00000563112 KIAA2026Q5HYC2 2103 aa13.62□□□□□ -0.23
CLK3-210ENST00000563112 Q6P435 159 aa13.62□□□□□ -0.23
CLK3-210ENST00000563112 Q6ZTK2 550 aa13.62□□□□□ -0.23
CLK3-210ENST00000563112 DYNAPQ8N1N2 210 aa13.62□□□□□ -0.23
CLK3-210ENST00000563112 PXT1Q8NFP0 134 aa13.62□□□□□ -0.23
CLK3-210ENST00000563112 CORO2AQ92828 525 aa13.62□□□□□ -0.23
CLK3-210ENST00000563112 NKX3-1Q99801 234 aaPredicted RBP13.62□□□□□ -0.23
CLK3-210ENST00000563112 BABAM2Q9NXR7 383 aa13.62□□□□□ -0.23
CLK3-210ENST00000563112 DIMT1Q9UNQ2 313 aaKnown RBP13.62□□□□□ -0.23
CLK3-210ENST00000563112 TCF19Q9Y242 345 aa13.62□□□□□ -0.23
CLK3-210ENST00000563112 HILPDAQ9Y5L2 63 aa13.62□□□□□ -0.23
CLK3-210ENST00000563112 NOTCH1P46531 2555 aa13.61□□□□□ -0.23
CLK3-210ENST00000563112 CLIC3O95833 236 aa13.61□□□□□ -0.23
CLK3-210ENST00000563112 CSN2P05814 226 aa13.61□□□□□ -0.23
CLK3-210ENST00000563112 HTR1DP28221 377 aa13.61□□□□□ -0.23
CLK3-210ENST00000563112 GLIPR1P48060 266 aa13.61□□□□□ -0.23
CLK3-210ENST00000563112 EFNB2P52799 333 aa13.61□□□□□ -0.23
CLK3-210ENST00000563112 SLC34A1Q06495 639 aa13.61□□□□□ -0.23
CLK3-210ENST00000563112 HERPUD1Q15011 391 aa13.61□□□□□ -0.23
CLK3-210ENST00000563112 RSU1Q15404 277 aa13.61□□□□□ -0.23
CLK3-210ENST00000563112 KRBOX4Q5JUW0 171 aa13.61□□□□□ -0.23
CLK3-210ENST00000563112 OR2G6Q5TZ20 316 aa13.61□□□□□ -0.23
CLK3-210ENST00000563112 ELP2Q6IA86 826 aa13.61□□□□□ -0.23
CLK3-210ENST00000563112 RTN4RL2Q86UN3 420 aa13.61□□□□□ -0.23
CLK3-210ENST00000563112 TNFAIP8L1Q8WVP5 186 aa13.61□□□□□ -0.23
CLK3-210ENST00000563112 TMEM80Q96HE8 168 aa13.61□□□□□ -0.23
CLK3-210ENST00000563112 NR1H4Q96RI1 486 aaPredicted RBP13.61□□□□□ -0.23
CLK3-210ENST00000563112 SIGLEC9Q9Y336 463 aa13.61□□□□□ -0.23
CLK3-210ENST00000563112 ODAMA1E959 279 aa13.6□□□□□ -0.23
CLK3-210ENST00000563112 F2RL2O00254 374 aa13.6□□□□□ -0.23
CLK3-210ENST00000563112 SLC33A1O00400 549 aaPredicted RBP13.6□□□□□ -0.23
CLK3-210ENST00000563112 CHST1O43916 411 aa13.6□□□□□ -0.23
CLK3-210ENST00000563112 CDK2P24941 298 aa13.6□□□□□ -0.23
CLK3-210ENST00000563112 DYNLT3P51808 116 aa13.6□□□□□ -0.23
CLK3-210ENST00000563112 PPP3R1P63098 170 aa13.6□□□□□ -0.23
CLK3-210ENST00000563112 RCN1Q15293 331 aa13.6□□□□□ -0.23
CLK3-210ENST00000563112 C2orf68Q2NKX9 166 aa13.6□□□□□ -0.23
CLK3-210ENST00000563112 PRAMEF5Q5TYX0 476 aa13.6□□□□□ -0.23
CLK3-210ENST00000563112 ZNF529Q6P280 563 aa13.6□□□□□ -0.23
CLK3-210ENST00000563112 HEPN1Q6WQI6 88 aa13.6□□□□□ -0.23
CLK3-210ENST00000563112 ABHD12Q8N2K0 398 aa13.6□□□□□ -0.23
CLK3-210ENST00000563112 OR4D6Q8NGJ1 314 aa13.6□□□□□ -0.23
CLK3-210ENST00000563112 ZNF596Q8TC21 504 aa13.6□□□□□ -0.23
CLK3-210ENST00000563112 RGP1Q92546 391 aaPredicted RBP13.6□□□□□ -0.23
CLK3-210ENST00000563112 TMEM106AQ96A25 262 aa13.6□□□□□ -0.23
CLK3-210ENST00000563112 FAM192AQ9GZU8 254 aa13.6□□□□□ -0.23
CLK3-210ENST00000563112 ING3Q9NXR8 418 aa13.6□□□□□ -0.23
CLK3-210ENST00000563112 TAS2R4Q9NYW5 299 aa13.6□□□□□ -0.23
CLK3-210ENST00000563112 OR6C3Q9NZP0 311 aa13.6□□□□□ -0.23
CLK3-210ENST00000563112 ZNF281Q9Y2X9 895 aa13.6□□□□□ -0.23
CLK3-210ENST00000563112 A6NDX4 124 aa13.59□□□□□ -0.23
CLK3-210ENST00000563112 H0YJX3 145 aa13.59□□□□□ -0.23
CLK3-210ENST00000563112 GABRPO00591 440 aa13.59□□□□□ -0.23
CLK3-210ENST00000563112 OGG1O15527 345 aa13.59□□□□□ -0.23
CLK3-210ENST00000563112 ALDOBP05062 364 aa13.59□□□□□ -0.23
CLK3-210ENST00000563112 PTGFRP43088 359 aa13.59□□□□□ -0.23
CLK3-210ENST00000563112 ARHGDIBP52566 201 aa13.59□□□□□ -0.23
CLK3-210ENST00000563112 IL13RA2Q14627 380 aa13.59□□□□□ -0.23
CLK3-210ENST00000563112 ATXN7L3Q14CW9 347 aaPredicted RBP13.59□□□□□ -0.23
CLK3-210ENST00000563112 PAN3Q58A45 887 aaKnown RBP13.59□□□□□ -0.23
CLK3-210ENST00000563112 LDLRAD2Q5SZI1 272 aa13.59□□□□□ -0.23
CLK3-210ENST00000563112 XAF1Q6GPH4 301 aa13.59□□□□□ -0.23
CLK3-210ENST00000563112 OR51A2Q8NGJ7 313 aa13.59□□□□□ -0.23
CLK3-210ENST00000563112 OR52N1Q8NH53 320 aa13.59□□□□□ -0.23
CLK3-210ENST00000563112 SMIM19Q96E16 107 aa13.59□□□□□ -0.23
CLK3-210ENST00000563112 S100A13Q99584 98 aa13.59□□□□□ -0.23
CLK3-210ENST00000563112 BARHL1Q9BZE3 327 aa13.59□□□□□ -0.23
CLK3-210ENST00000563112 TMEM138Q9NPI0 162 aa13.59□□□□□ -0.23
CLK3-210ENST00000563112 DPM3Q9P2X0 92 aa13.59□□□□□ -0.23
CLK3-210ENST00000563112 ING4Q9UNL4 249 aa13.59□□□□□ -0.23
CLK3-210ENST00000563112 HSPE1-MOB4S4R3N1 261 aa13.59□□□□□ -0.23
CLK3-210ENST00000563112 ZNF729A6NN14 1252 aaPredicted RBP13.58□□□□□ -0.24
CLK3-210ENST00000563112 TOR1AO14656 332 aa13.58□□□□□ -0.24
CLK3-210ENST00000563112 WIPF1O43516 503 aa13.58□□□□□ -0.24
CLK3-210ENST00000563112 MMP23AO75900 390 aa13.58□□□□□ -0.24
CLK3-210ENST00000563112 HTR3BO95264 441 aa13.58□□□□□ -0.24
CLK3-210ENST00000563112 CSF1P09603 554 aa13.58□□□□□ -0.24
CLK3-210ENST00000563112 PRRX1P54821 245 aa13.58□□□□□ -0.24
CLK3-210ENST00000563112 ADARB1P78563 741 aaKnown RBP13.58□□□□□ -0.24
CLK3-210ENST00000563112 ARSJQ5FYB0 599 aaPredicted RBP13.58□□□□□ -0.24
CLK3-210ENST00000563112 TMEM219Q86XT9 240 aa13.58□□□□□ -0.24
CLK3-210ENST00000563112 KLHDC1Q8N7A1 406 aa13.58□□□□□ -0.24
CLK3-210ENST00000563112 ZNF565Q8N9K5 539 aa13.58□□□□□ -0.24
CLK3-210ENST00000563112 OR51T1Q8NGJ9 327 aa13.58□□□□□ -0.24
CLK3-210ENST00000563112 CREB3L1Q96BA8 519 aa13.58□□□□□ -0.24
CLK3-210ENST00000563112 COQ2Q96H96 371 aa13.58□□□□□ -0.24
CLK3-210ENST00000563112 PRSS22Q9GZN4 317 aa13.58□□□□□ -0.24
CLK3-210ENST00000563112 METTL9Q9H1A3 318 aa13.58□□□□□ -0.24
CLK3-210ENST00000563112 CMYA5Q8N3K9 4069 aa13.58□□□□□ -0.24
CLK3-210ENST00000563112 TET2Q6N021 2002 aaPredicted RBP13.57□□□□□ -0.24
CLK3-210ENST00000563112 EFCAB10A6NFE3 127 aa13.57□□□□□ -0.24
CLK3-210ENST00000563112 LEUTXA8MZ59 168 aa13.57□□□□□ -0.24
CLK3-210ENST00000563112 PEX14O75381 377 aa13.57□□□□□ -0.24
CLK3-210ENST00000563112 CSTBP04080 98 aaKnown RBP13.57□□□□□ -0.24
CLK3-210ENST00000563112 VSIG10L2P0DP72 767 aa13.57□□□□□ -0.24
CLK3-210ENST00000563112 C21orf33P30042 268 aaPredicted RBP13.57□□□□□ -0.24
CLK3-210ENST00000563112 BDKRB2P30411 391 aa13.57□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms