RNA–Protein interactions for RNA: ENST00000560628.1

LDLR-214, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 535 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-214ENST00000560628 DPM3Q9P2X0 92 aa8.21□□□□□ -1.1
LDLR-214ENST00000560628 PCDHGB5Q9Y5G0 923 aa8.21□□□□□ -1.1
LDLR-214ENST00000560628 VWFP04275 2813 aa8.21□□□□□ -1.1
LDLR-214ENST00000560628 KIAA2026Q5HYC2 2103 aa8.21□□□□□ -1.1
LDLR-214ENST00000560628 NOTCH1P46531 2555 aa8.2□□□□□ -1.1
LDLR-214ENST00000560628 DSCAML1Q8TD84 2053 aa8.2□□□□□ -1.1
LDLR-214ENST00000560628 ODAMA1E959 279 aa8.2□□□□□ -1.1
LDLR-214ENST00000560628 FUOMA2VDF0 154 aa8.2□□□□□ -1.1
LDLR-214ENST00000560628 TMEM212A6NML5 194 aa8.2□□□□□ -1.1
LDLR-214ENST00000560628 FAM90A22PA8MWA6 464 aa8.2□□□□□ -1.1
LDLR-214ENST00000560628 SLC33A1O00400 549 aaPredicted RBP8.2□□□□□ -1.1
LDLR-214ENST00000560628 SULT1B1O43704 296 aa8.2□□□□□ -1.1
LDLR-214ENST00000560628 MPZL2O60487 215 aa8.2□□□□□ -1.1
LDLR-214ENST00000560628 BAG2O95816 211 aa8.2□□□□□ -1.1
LDLR-214ENST00000560628 PRB2P02812 416 aaPredicted RBP8.2□□□□□ -1.1
LDLR-214ENST00000560628 SOX2P48431 317 aa8.2□□□□□ -1.1
LDLR-214ENST00000560628 ZP1P60852 638 aa8.2□□□□□ -1.1
LDLR-214ENST00000560628 EMX1Q04741 257 aaPredicted RBP8.2□□□□□ -1.1
LDLR-214ENST00000560628 ATXN7L3Q14CW9 347 aaPredicted RBP8.2□□□□□ -1.1
LDLR-214ENST00000560628 CDK5R1Q15078 307 aa8.2□□□□□ -1.1
LDLR-214ENST00000560628 ZSCAN26Q16670 478 aa8.2□□□□□ -1.1
LDLR-214ENST00000560628 ZNF691Q5VV52 312 aa8.2□□□□□ -1.1
LDLR-214ENST00000560628 OR52W1Q6IF63 320 aa8.2□□□□□ -1.1
LDLR-214ENST00000560628 HEPN1Q6WQI6 88 aa8.2□□□□□ -1.1
LDLR-214ENST00000560628 C10orf67Q8IYJ2 551 aa8.2□□□□□ -1.1
LDLR-214ENST00000560628 SAXO1Q8IYX7 474 aa8.2□□□□□ -1.1
LDLR-214ENST00000560628 SYS1Q8N2H4 156 aa8.2□□□□□ -1.1
LDLR-214ENST00000560628 PARP16Q8N5Y8 322 aa8.2□□□□□ -1.1
LDLR-214ENST00000560628 TSEN15Q8WW01 171 aaKnown RBP8.2□□□□□ -1.1
LDLR-214ENST00000560628 R3HDM4Q96D70 268 aa8.2□□□□□ -1.1
LDLR-214ENST00000560628 MYCBPQ99417 103 aaPredicted RBP8.2□□□□□ -1.1
LDLR-214ENST00000560628 MMP28Q9H239 520 aa8.2□□□□□ -1.1
LDLR-214ENST00000560628 PPIL3Q9H2H8 161 aaKnown RBP8.2□□□□□ -1.1
LDLR-214ENST00000560628 GAL3ST2Q9H3Q3 398 aa8.2□□□□□ -1.1
LDLR-214ENST00000560628 ZNF286AQ9HBT8 521 aa8.2□□□□□ -1.1
LDLR-214ENST00000560628 TAS2R3Q9NYW6 316 aa8.2□□□□□ -1.1
LDLR-214ENST00000560628 DHDHQ9UQ10 334 aa8.2□□□□□ -1.1
LDLR-214ENST00000560628 RPL36Q9Y3U8 105 aaKnown RBP8.2□□□□□ -1.1
LDLR-214ENST00000560628 A0A1W2PRX2 142 aa8.19□□□□□ -1.1
LDLR-214ENST00000560628 SH2D7A6NKC9 451 aaPredicted RBP8.19□□□□□ -1.1
LDLR-214ENST00000560628 LEUTXA8MZ59 168 aa8.19□□□□□ -1.1
LDLR-214ENST00000560628 H3BUI4 141 aa8.19□□□□□ -1.1
LDLR-214ENST00000560628 TOR1AO14656 332 aa8.19□□□□□ -1.1
LDLR-214ENST00000560628 ALX3O95076 343 aa8.19□□□□□ -1.1
LDLR-214ENST00000560628 IGHV3-7P01780 117 aa8.19□□□□□ -1.1
LDLR-214ENST00000560628 RPSAP08865 295 aaKnown RBP8.19□□□□□ -1.1
LDLR-214ENST00000560628 CCDC159P0C7I6 412 aa8.19□□□□□ -1.1
LDLR-214ENST00000560628 NFYBP25208 207 aa8.19□□□□□ -1.1
LDLR-214ENST00000560628 PTGFRP43088 359 aa8.19□□□□□ -1.1
LDLR-214ENST00000560628 VDAC2P45880 294 aaPredicted RBP8.19□□□□□ -1.1
LDLR-214ENST00000560628 OR3A4PP47883 348 aa8.19□□□□□ -1.1
LDLR-214ENST00000560628 BDH1Q02338 343 aa8.19□□□□□ -1.1
LDLR-214ENST00000560628 RAB40BQ12829 278 aa8.19□□□□□ -1.1
LDLR-214ENST00000560628 RBM39Q14498 530 aaKnown RBP8.19□□□□□ -1.1
LDLR-214ENST00000560628 SMN1Q16637 294 aaKnown RBP8.19□□□□□ -1.1
LDLR-214ENST00000560628 C17orf58Q2M2W7 97 aa8.19□□□□□ -1.1
LDLR-214ENST00000560628 BEAN1Q3B7T3 259 aa8.19□□□□□ -1.1
LDLR-214ENST00000560628 KLHL22Q53GT1 634 aa8.19□□□□□ -1.1
LDLR-214ENST00000560628 FBLN7Q53RD9 439 aa8.19□□□□□ -1.1
LDLR-214ENST00000560628 RTN4RL2Q86UN3 420 aa8.19□□□□□ -1.1
LDLR-214ENST00000560628 PQLC1Q8N2U9 271 aa8.19□□□□□ -1.1
LDLR-214ENST00000560628 CHST4Q8NCG5 386 aa8.19□□□□□ -1.1
LDLR-214ENST00000560628 OR4D6Q8NGJ1 314 aa8.19□□□□□ -1.1
LDLR-214ENST00000560628 OR51A2Q8NGJ7 313 aa8.19□□□□□ -1.1
LDLR-214ENST00000560628 OR10K1Q8NGX5 313 aa8.19□□□□□ -1.1
LDLR-214ENST00000560628 ZNF596Q8TC21 504 aa8.19□□□□□ -1.1
LDLR-214ENST00000560628 APH1BQ8WW43 257 aa8.19□□□□□ -1.1
LDLR-214ENST00000560628 GPER1Q99527 375 aa8.19□□□□□ -1.1
LDLR-214ENST00000560628 OCSTAMPQ9BR26 566 aa8.19□□□□□ -1.1
LDLR-214ENST00000560628 WNT10AQ9GZT5 417 aa8.19□□□□□ -1.1
LDLR-214ENST00000560628 RHOFQ9HBH0 211 aa8.19□□□□□ -1.1
LDLR-214ENST00000560628 INPP5EQ9NRR6 644 aa8.19□□□□□ -1.1
LDLR-214ENST00000560628 MRPS18AQ9NVS2 196 aaKnown RBP8.19□□□□□ -1.1
LDLR-214ENST00000560628 TAS2R4Q9NYW5 299 aa8.19□□□□□ -1.1
LDLR-214ENST00000560628 MEIKINA0A087WXM9 373 aa8.18□□□□□ -1.1
LDLR-214ENST00000560628 TRAV24A0A0B4J272 114 aa8.18□□□□□ -1.1
LDLR-214ENST00000560628 ADARB2-AS1A8MUL3 147 aa8.18□□□□□ -1.1
LDLR-214ENST00000560628 H0YJX3 145 aa8.18□□□□□ -1.1
LDLR-214ENST00000560628 BUB1B-PAK6H3BSN5 160 aa8.18□□□□□ -1.1
LDLR-214ENST00000560628 MAGEB3O15480 346 aa8.18□□□□□ -1.1
LDLR-214ENST00000560628 IGLV1-47P01700 117 aa8.18□□□□□ -1.1
LDLR-214ENST00000560628 LIMS3P0CW19 117 aa8.18□□□□□ -1.1
LDLR-214ENST00000560628 LIMS4P0CW20 117 aa8.18□□□□□ -1.1
LDLR-214ENST00000560628 RAB3AP20336 220 aa8.18□□□□□ -1.1
LDLR-214ENST00000560628 CD34P28906 385 aa8.18□□□□□ -1.1
LDLR-214ENST00000560628 BRS3P32247 399 aa8.18□□□□□ -1.1
LDLR-214ENST00000560628 MTNR1BP49286 362 aa8.18□□□□□ -1.1
LDLR-214ENST00000560628 ETV1P50549 477 aa8.18□□□□□ -1.1
LDLR-214ENST00000560628 PRRX1P54821 245 aa8.18□□□□□ -1.1
LDLR-214ENST00000560628 LTC4SQ16873 150 aa8.18□□□□□ -1.1
LDLR-214ENST00000560628 PAN3Q58A45 887 aaKnown RBP8.18□□□□□ -1.1
LDLR-214ENST00000560628 OXLD1Q5BKU9 147 aa8.18□□□□□ -1.1
LDLR-214ENST00000560628 TPTE2P1Q5T6R2 138 aa8.18□□□□□ -1.1
LDLR-214ENST00000560628 SAMD5Q5TGI4 173 aa8.18□□□□□ -1.1
LDLR-214ENST00000560628 XAF1Q6GPH4 301 aa8.18□□□□□ -1.1
LDLR-214ENST00000560628 CENPVQ7Z7K6 275 aaPredicted RBP8.18□□□□□ -1.1
LDLR-214ENST00000560628 NDUFA11Q86Y39 141 aa8.18□□□□□ -1.1
LDLR-214ENST00000560628 OR5AU1Q8NGC0 362 aa8.18□□□□□ -1.1
LDLR-214ENST00000560628 RFESDQ8TAC1 157 aa8.18□□□□□ -1.1
LDLR-214ENST00000560628 WIPF2Q8TF74 440 aaPredicted RBP8.18□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 41.4 ms