RNA–Protein interactions for RNA: ENST00000559873.5

USP3-216, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 584 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-216ENST00000559873 TMEM160Q9NX00 188 aa8.36□□□□□ -1.07
USP3-216ENST00000559873 DUX4Q9UBX2 424 aa8.36□□□□□ -1.07
USP3-216ENST00000559873 DAPK2Q9UIK4 370 aa8.36□□□□□ -1.07
USP3-216ENST00000559873 RPUSD1Q9UJJ7 312 aaKnown RBP8.36□□□□□ -1.07
USP3-216ENST00000559873 A0A1W2PP11 408 aa8.35□□□□□ -1.07
USP3-216ENST00000559873 hCG_1809904A0A1W2PP81 198 aa8.35□□□□□ -1.07
USP3-216ENST00000559873 A0A1W2PPE2 198 aa8.35□□□□□ -1.07
USP3-216ENST00000559873 A0A1W2PR64 198 aa8.35□□□□□ -1.07
USP3-216ENST00000559873 A0A1W2PRV1 198 aa8.35□□□□□ -1.07
USP3-216ENST00000559873 hADV38S2A0JD32 116 aa8.35□□□□□ -1.07
USP3-216ENST00000559873 TMEM82A0PJX8 343 aa8.35□□□□□ -1.07
USP3-216ENST00000559873 SMIM30A4D0T7 59 aa8.35□□□□□ -1.07
USP3-216ENST00000559873 METTL21EPA6NDL7 271 aa8.35□□□□□ -1.07
USP3-216ENST00000559873 TMEM14DPA8MWL7 114 aa8.35□□□□□ -1.07
USP3-216ENST00000559873 C22orf46C9J442 243 aa8.35□□□□□ -1.07
USP3-216ENST00000559873 SLC33A1O00400 549 aaPredicted RBP8.35□□□□□ -1.07
USP3-216ENST00000559873 SCGNO76038 276 aa8.35□□□□□ -1.07
USP3-216ENST00000559873 LY6G6DO95868 133 aa8.35□□□□□ -1.07
USP3-216ENST00000559873 TFF1P04155 84 aa8.35□□□□□ -1.07
USP3-216ENST00000559873 GLAP06280 429 aa8.35□□□□□ -1.07
USP3-216ENST00000559873 RAB6AP20340 208 aa8.35□□□□□ -1.07
USP3-216ENST00000559873 ERP29P30040 261 aaKnown RBP8.35□□□□□ -1.07
USP3-216ENST00000559873 OR3A1P47881 315 aa8.35□□□□□ -1.07
USP3-216ENST00000559873 CLDN12P56749 244 aa8.35□□□□□ -1.07
USP3-216ENST00000559873 EDDM3BP56851 147 aa8.35□□□□□ -1.07
USP3-216ENST00000559873 VBP1P61758 197 aa8.35□□□□□ -1.07
USP3-216ENST00000559873 NCS1P62166 190 aa8.35□□□□□ -1.07
USP3-216ENST00000559873 RPL31P62899 125 aaKnown RBP8.35□□□□□ -1.07
USP3-216ENST00000559873 MEF2CQ06413 473 aaPredicted RBP8.35□□□□□ -1.07
USP3-216ENST00000559873 KRTAP1-1Q07627 177 aa8.35□□□□□ -1.07
USP3-216ENST00000559873 SCGB2A2Q13296 93 aa8.35□□□□□ -1.07
USP3-216ENST00000559873 BLMHQ13867 455 aa8.35□□□□□ -1.07
USP3-216ENST00000559873 EDDM3AQ14507 147 aa8.35□□□□□ -1.07
USP3-216ENST00000559873 METTL11BQ5VVY1 283 aa8.35□□□□□ -1.07
USP3-216ENST00000559873 FAHD2BQ6P2I3 314 aaPredicted RBP8.35□□□□□ -1.07
USP3-216ENST00000559873 Q6P435 159 aa8.35□□□□□ -1.07
USP3-216ENST00000559873 SLC16A12Q6ZSM3 486 aa8.35□□□□□ -1.07
USP3-216ENST00000559873 FAM185AQ8N0U4 392 aa8.35□□□□□ -1.07
USP3-216ENST00000559873 TMEM104Q8NE00 496 aa8.35□□□□□ -1.07
USP3-216ENST00000559873 OR51D1Q8NGF3 324 aa8.35□□□□□ -1.07
USP3-216ENST00000559873 OR56B1Q8NGI3 324 aa8.35□□□□□ -1.07
USP3-216ENST00000559873 C8orf46Q8TAG6 207 aa8.35□□□□□ -1.07
USP3-216ENST00000559873 AP3S1Q92572 193 aa8.35□□□□□ -1.07
USP3-216ENST00000559873 FAHD2AQ96GK7 314 aa8.35□□□□□ -1.07
USP3-216ENST00000559873 NEDD4LQ96PU5 975 aa8.35□□□□□ -1.07
USP3-216ENST00000559873 DPCDQ9BVM2 203 aaPredicted RBP8.35□□□□□ -1.07
USP3-216ENST00000559873 TM2D1Q9BX74 207 aa8.35□□□□□ -1.07
USP3-216ENST00000559873 BARHL1Q9BZE3 327 aa8.35□□□□□ -1.07
USP3-216ENST00000559873 PPA2Q9H2U2 334 aa8.35□□□□□ -1.07
USP3-216ENST00000559873 BANF2Q9H503 90 aa8.35□□□□□ -1.07
USP3-216ENST00000559873 RNF167Q9H6Y7 350 aa8.35□□□□□ -1.07
USP3-216ENST00000559873 METRNQ9UJH8 293 aa8.35□□□□□ -1.07
USP3-216ENST00000559873 INSIG2Q9Y5U4 225 aa8.35□□□□□ -1.07
USP3-216ENST00000559873 ETV7Q9Y603 341 aa8.35□□□□□ -1.07
USP3-216ENST00000559873 SONP18583 2426 aaKnown RBP8.35□□□□□ -1.07
USP3-216ENST00000559873 CELSR1Q9NYQ6 3014 aa8.35□□□□□ -1.07
USP3-216ENST00000559873 WNK2Q9Y3S1 2297 aa8.34□□□□□ -1.07
USP3-216ENST00000559873 TRGV10A0A0A0MS01 117 aa8.34□□□□□ -1.07
USP3-216ENST00000559873 A0A0G2JK05 382 aa8.34□□□□□ -1.07
USP3-216ENST00000559873 KIR2DS1A0A191URI9 304 aa8.34□□□□□ -1.07
USP3-216ENST00000559873 CCDC160A6NGH7 325 aa8.34□□□□□ -1.07
USP3-216ENST00000559873 MCRIP1C9JLW8 97 aa8.34□□□□□ -1.07
USP3-216ENST00000559873 HSPB6O14558 160 aa8.34□□□□□ -1.07
USP3-216ENST00000559873 PSPNO60542 156 aa8.34□□□□□ -1.07
USP3-216ENST00000559873 PDCD6O75340 191 aa8.34□□□□□ -1.07
USP3-216ENST00000559873 CA11O75493 328 aa8.34□□□□□ -1.07
USP3-216ENST00000559873 PPIAL4GP0DN37 164 aa8.34□□□□□ -1.07
USP3-216ENST00000559873 FUT3P21217 361 aa8.34□□□□□ -1.07
USP3-216ENST00000559873 P2RX3P56373 397 aa8.34□□□□□ -1.07
USP3-216ENST00000559873 UNC119Q13432 240 aa8.34□□□□□ -1.07
USP3-216ENST00000559873 ATXN7L3Q14CW9 347 aaPredicted RBP8.34□□□□□ -1.07
USP3-216ENST00000559873 ARL6IP1Q15041 203 aa8.34□□□□□ -1.07
USP3-216ENST00000559873 CTF1Q16619 201 aa8.34□□□□□ -1.07
USP3-216ENST00000559873 C2orf76Q3KRA6 126 aa8.34□□□□□ -1.07
USP3-216ENST00000559873 KRBOX4Q5JUW0 171 aa8.34□□□□□ -1.07
USP3-216ENST00000559873 NKAPLQ5M9Q1 402 aa8.34□□□□□ -1.07
USP3-216ENST00000559873 IDNKQ5T6J7 187 aa8.34□□□□□ -1.07
USP3-216ENST00000559873 RAB12Q6IQ22 244 aa8.34□□□□□ -1.07
USP3-216ENST00000559873 C17orf107Q6ZR85 190 aa8.34□□□□□ -1.07
USP3-216ENST00000559873 TRAPPC6BQ86SZ2 158 aa8.34□□□□□ -1.07
USP3-216ENST00000559873 KIR3DL3Q8N743 410 aa8.34□□□□□ -1.07
USP3-216ENST00000559873 SUMF2Q8NBJ7 301 aa8.34□□□□□ -1.07
USP3-216ENST00000559873 OR4S1Q8NGB4 309 aa8.34□□□□□ -1.07
USP3-216ENST00000559873 SLC25A46Q96AG3 418 aa8.34□□□□□ -1.07
USP3-216ENST00000559873 PHF21AQ96BD5 680 aa8.34□□□□□ -1.07
USP3-216ENST00000559873 KCTD12Q96CX2 325 aaKnown RBP8.34□□□□□ -1.07
USP3-216ENST00000559873 SMR3AQ99954 134 aa8.34□□□□□ -1.07
USP3-216ENST00000559873 CHST6Q9GZX3 395 aa8.34□□□□□ -1.07
USP3-216ENST00000559873 SHARPINQ9H0F6 387 aa8.34□□□□□ -1.07
USP3-216ENST00000559873 DCSTAMPQ9H295 470 aa8.34□□□□□ -1.07
USP3-216ENST00000559873 C7orf69Q9H7B7 122 aa8.34□□□□□ -1.07
USP3-216ENST00000559873 ABRACLQ9P1F3 81 aa8.34□□□□□ -1.07
USP3-216ENST00000559873 RCC2Q9P258 522 aaKnown RBP8.34□□□□□ -1.07
USP3-216ENST00000559873 RAB22AQ9UL26 194 aa8.34□□□□□ -1.07
USP3-216ENST00000559873 KPTNQ9Y664 436 aa8.34□□□□□ -1.07
USP3-216ENST00000559873 AUP1Q9Y679 476 aa8.34□□□□□ -1.07
USP3-216ENST00000559873 TEP1Q99973 2627 aaKnown RBP8.33□□□□□ -1.08
USP3-216ENST00000559873 DOCK11Q5JSL3 2073 aa8.33□□□□□ -1.08
USP3-216ENST00000559873 TRAV24A0A0B4J272 114 aa8.33□□□□□ -1.08
USP3-216ENST00000559873 TMEM272A0A1B0GTI8 110 aa8.33□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms