RNA–Protein interactions for RNA: ENST00000554975.5

SHMT2-216, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 780 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-216ENST00000554975 TMEM128Q5BJH2 165 aa9.5□□□□□ -0.89
SHMT2-216ENST00000554975 PHYHD1Q5SRE7 291 aa9.5□□□□□ -0.89
SHMT2-216ENST00000554975 ADAM5Q6NVV9 412 aa9.5□□□□□ -0.89
SHMT2-216ENST00000554975 GSG1LQ6UXU4 331 aa9.5□□□□□ -0.89
SHMT2-216ENST00000554975 TMUB2Q71RG4 321 aa9.5□□□□□ -0.89
SHMT2-216ENST00000554975 NUFIP2Q7Z417 695 aaKnown RBP9.5□□□□□ -0.89
SHMT2-216ENST00000554975 PXT1Q8NFP0 134 aa9.5□□□□□ -0.89
SHMT2-216ENST00000554975 TERB2Q8NHR7 220 aa9.5□□□□□ -0.89
SHMT2-216ENST00000554975 BORCS8Q96FH0 119 aa9.5□□□□□ -0.89
SHMT2-216ENST00000554975 C1orf159Q96HA4 380 aa9.5□□□□□ -0.89
SHMT2-216ENST00000554975 LYZL4Q96KX0 146 aa9.5□□□□□ -0.89
SHMT2-216ENST00000554975 DHRS9Q9BPW9 319 aa9.5□□□□□ -0.89
SHMT2-216ENST00000554975 OR2H1Q9GZK4 316 aa9.5□□□□□ -0.89
SHMT2-216ENST00000554975 MFFQ9GZY8 342 aa9.5□□□□□ -0.89
SHMT2-216ENST00000554975 SHARPINQ9H0F6 387 aa9.5□□□□□ -0.89
SHMT2-216ENST00000554975 ARL6Q9H0F7 186 aa9.5□□□□□ -0.89
SHMT2-216ENST00000554975 PPA2Q9H2U2 334 aa9.5□□□□□ -0.89
SHMT2-216ENST00000554975 ESRP2Q9H6T0 727 aaKnown RBP9.5□□□□□ -0.89
SHMT2-216ENST00000554975 ZMAT3Q9HA38 289 aaKnown RBP9.5□□□□□ -0.89
SHMT2-216ENST00000554975 ZNF224Q9NZL3 707 aa9.5□□□□□ -0.89
SHMT2-216ENST00000554975 LPAR3Q9UBY5 353 aa9.5□□□□□ -0.89
SHMT2-216ENST00000554975 PFDN2Q9UHV9 154 aa9.5□□□□□ -0.89
SHMT2-216ENST00000554975 HSF4Q9ULV5 492 aa9.5□□□□□ -0.89
SHMT2-216ENST00000554975 C14orf166Q9Y224 244 aaKnown RBP9.5□□□□□ -0.89
SHMT2-216ENST00000554975 VSIG4Q9Y279 399 aa9.5□□□□□ -0.89
SHMT2-216ENST00000554975 NOSIPQ9Y314 301 aaKnown RBP9.5□□□□□ -0.89
SHMT2-216ENST00000554975 ARFGEF3Q5TH69 2177 aa9.49□□□□□ -0.89
SHMT2-216ENST00000554975 IGKV1-9A0A0C4DH69 117 aa9.49□□□□□ -0.89
SHMT2-216ENST00000554975 ZNF816-ZNF321PA0A0X1KG74 233 aa9.49□□□□□ -0.89
SHMT2-216ENST00000554975 C9orf170A2RU37 121 aa9.49□□□□□ -0.89
SHMT2-216ENST00000554975 ZNF724A8MTY0 619 aa9.49□□□□□ -0.89
SHMT2-216ENST00000554975 SSX5O60225 188 aa9.49□□□□□ -0.89
SHMT2-216ENST00000554975 MRPL33O75394 65 aaKnown RBP9.49□□□□□ -0.89
SHMT2-216ENST00000554975 MPC2O95563 127 aa9.49□□□□□ -0.89
SHMT2-216ENST00000554975 LCATP04180 440 aa9.49□□□□□ -0.89
SHMT2-216ENST00000554975 SERPINA5P05154 406 aa9.49□□□□□ -0.89
SHMT2-216ENST00000554975 CSN2P05814 226 aa9.49□□□□□ -0.89
SHMT2-216ENST00000554975 IGHV4-31P0DP07 118 aa9.49□□□□□ -0.89
SHMT2-216ENST00000554975 ZNF32P17041 273 aa9.49□□□□□ -0.89
SHMT2-216ENST00000554975 SRD5A1P18405 259 aa9.49□□□□□ -0.89
SHMT2-216ENST00000554975 CXCL2P19875 107 aa9.49□□□□□ -0.89
SHMT2-216ENST00000554975 SERPINA2P20848 420 aa9.49□□□□□ -0.89
SHMT2-216ENST00000554975 VAMP1P23763 118 aa9.49□□□□□ -0.89
SHMT2-216ENST00000554975 BLVRBP30043 206 aaPredicted RBP9.49□□□□□ -0.89
SHMT2-216ENST00000554975 PMELP40967 661 aa9.49□□□□□ -0.89
SHMT2-216ENST00000554975 RBP2P50120 134 aa9.49□□□□□ -0.89
SHMT2-216ENST00000554975 ATP1B3P54709 279 aa9.49□□□□□ -0.89
SHMT2-216ENST00000554975 CEACAM16Q2WEN9 425 aa9.49□□□□□ -0.89
SHMT2-216ENST00000554975 COMMD7Q86VX2 200 aa9.49□□□□□ -0.89
SHMT2-216ENST00000554975 TMEM104Q8NE00 496 aa9.49□□□□□ -0.89
SHMT2-216ENST00000554975 TMEM185AQ8NFB2 350 aa9.49□□□□□ -0.89
SHMT2-216ENST00000554975 OR4S1Q8NGB4 309 aa9.49□□□□□ -0.89
SHMT2-216ENST00000554975 THAP6Q8TBB0 222 aa9.49□□□□□ -0.89
SHMT2-216ENST00000554975 ST8SIA4Q92187 359 aa9.49□□□□□ -0.89
SHMT2-216ENST00000554975 EMG1Q92979 244 aaKnown RBP9.49□□□□□ -0.89
SHMT2-216ENST00000554975 CMBLQ96DG6 245 aa9.49□□□□□ -0.89
SHMT2-216ENST00000554975 FBXO17Q96EF6 278 aa9.49□□□□□ -0.89
SHMT2-216ENST00000554975 PHYHIPLQ96FC7 376 aa9.49□□□□□ -0.89
SHMT2-216ENST00000554975 Q96M66 194 aa9.49□□□□□ -0.89
SHMT2-216ENST00000554975 CITED4Q96RK1 184 aa9.49□□□□□ -0.89
SHMT2-216ENST00000554975 NKX3-1Q99801 234 aaPredicted RBP9.49□□□□□ -0.89
SHMT2-216ENST00000554975 VRK1Q99986 396 aaPredicted RBP9.49□□□□□ -0.89
SHMT2-216ENST00000554975 NICN1Q9BSH3 213 aa9.49□□□□□ -0.89
SHMT2-216ENST00000554975 GPR35Q9HC97 309 aa9.49□□□□□ -0.89
SHMT2-216ENST00000554975 GP6Q9HCN6 339 aa9.49□□□□□ -0.89
SHMT2-216ENST00000554975 RAB18Q9NP72 206 aa9.49□□□□□ -0.89
SHMT2-216ENST00000554975 ZNF319Q9P2F9 582 aa9.49□□□□□ -0.89
SHMT2-216ENST00000554975 KCNK7Q9Y2U2 307 aa9.49□□□□□ -0.89
SHMT2-216ENST00000554975 RNF115Q9Y4L5 304 aa9.49□□□□□ -0.89
SHMT2-216ENST00000554975 A0A0A6YYD4 124 aa9.48□□□□□ -0.89
SHMT2-216ENST00000554975 hCG_38984A0A1B0GV85 526 aa9.48□□□□□ -0.89
SHMT2-216ENST00000554975 FAM90A10PA6NDY2 464 aa9.48□□□□□ -0.89
SHMT2-216ENST00000554975 FAM90A18PA6NE21 464 aa9.48□□□□□ -0.89
SHMT2-216ENST00000554975 FAM90A16PA6NEW6 464 aa9.48□□□□□ -0.89
SHMT2-216ENST00000554975 FAM90A20PA6NIJ5 464 aa9.48□□□□□ -0.89
SHMT2-216ENST00000554975 FAM90A8PA6NJQ4 464 aa9.48□□□□□ -0.89
SHMT2-216ENST00000554975 FAM90A7PA6NKC0 464 aa9.48□□□□□ -0.89
SHMT2-216ENST00000554975 FOXI3A8MTJ6 420 aaPredicted RBP9.48□□□□□ -0.89
SHMT2-216ENST00000554975 FAM90A22PA8MWA6 464 aa9.48□□□□□ -0.89
SHMT2-216ENST00000554975 FAM90A12PA8MX19 464 aa9.48□□□□□ -0.89
SHMT2-216ENST00000554975 FAM90A5PA8MXJ8 464 aa9.48□□□□□ -0.89
SHMT2-216ENST00000554975 FAM90A23PA8MXZ1 464 aa9.48□□□□□ -0.89
SHMT2-216ENST00000554975 LEUTXA8MZ59 168 aa9.48□□□□□ -0.89
SHMT2-216ENST00000554975 RPL36A-HNRNPH2H7BZ11 118 aa9.48□□□□□ -0.89
SHMT2-216ENST00000554975 BCL2L11O43521 198 aa9.48□□□□□ -0.89
SHMT2-216ENST00000554975 FAM90A15PP0C7V4 464 aa9.48□□□□□ -0.89
SHMT2-216ENST00000554975 FAM90A13PP0C7W8 464 aa9.48□□□□□ -0.89
SHMT2-216ENST00000554975 FAM90A14PP0C7W9 464 aa9.48□□□□□ -0.89
SHMT2-216ENST00000554975 FAM90A24PP0C7X0 464 aa9.48□□□□□ -0.89
SHMT2-216ENST00000554975 RRASP10301 218 aa9.48□□□□□ -0.89
SHMT2-216ENST00000554975 B4GALT1P15291 398 aa9.48□□□□□ -0.89
SHMT2-216ENST00000554975 EGR1P18146 543 aa9.48□□□□□ -0.89
SHMT2-216ENST00000554975 IL32P24001 234 aa9.48□□□□□ -0.89
SHMT2-216ENST00000554975 CALCRP30988 508 aa9.48□□□□□ -0.89
SHMT2-216ENST00000554975 NUP62P37198 522 aaPredicted RBP9.48□□□□□ -0.89
SHMT2-216ENST00000554975 FUT6P51993 359 aa9.48□□□□□ -0.89
SHMT2-216ENST00000554975 LOXL1Q08397 574 aaPredicted RBP9.48□□□□□ -0.89
SHMT2-216ENST00000554975 PPP1R1AQ13522 171 aa9.48□□□□□ -0.89
SHMT2-216ENST00000554975 HLXQ14774 488 aaPredicted RBP9.48□□□□□ -0.89
SHMT2-216ENST00000554975 RSU1Q15404 277 aa9.48□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms