RNA–Protein interactions for RNA: ENST00000553403.1

CCDC88C-205, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-205ENST00000553403 SUMF2Q8NBJ7 301 aa22.39■■□□□ 1.18
CCDC88C-205ENST00000553403 ELMOD3Q96FG2 381 aa22.39■■□□□ 1.18
CCDC88C-205ENST00000553403 PDCD10Q9BUL8 212 aa22.39■■□□□ 1.18
CCDC88C-205ENST00000553403 CXXC4Q9H2H0 198 aa22.39■■□□□ 1.18
CCDC88C-205ENST00000553403 TRBV6-6A0A0A6YYG2 114 aa22.39■■□□□ 1.17
CCDC88C-205ENST00000553403 L7N2F9 121 aa22.39■■□□□ 1.17
CCDC88C-205ENST00000553403 PGA5P0DJD9 388 aa22.39■■□□□ 1.17
CCDC88C-205ENST00000553403 CXCL2P19875 107 aa22.39■■□□□ 1.17
CCDC88C-205ENST00000553403 RBM39Q14498 530 aaKnown RBP22.39■■□□□ 1.17
CCDC88C-205ENST00000553403 IGFBP7Q16270 282 aa22.39■■□□□ 1.17
CCDC88C-205ENST00000553403 SPERTQ8NA61 448 aa22.39■■□□□ 1.17
CCDC88C-205ENST00000553403 MUCL1Q96DR8 90 aa22.39■■□□□ 1.17
CCDC88C-205ENST00000553403 WDR13Q9H1Z4 485 aa22.39■■□□□ 1.17
CCDC88C-205ENST00000553403 LIME1Q9H400 295 aa22.39■■□□□ 1.17
CCDC88C-205ENST00000553403 ZNF835Q9Y2P0 537 aa22.39■■□□□ 1.17
CCDC88C-205ENST00000553403 A8MXE2 369 aa22.38■■□□□ 1.17
CCDC88C-205ENST00000553403 CCSO14618 274 aa22.38■■□□□ 1.17
CCDC88C-205ENST00000553403 TIMM8AO60220 97 aaPredicted RBP22.38■■□□□ 1.17
CCDC88C-205ENST00000553403 DUSP1P28562 367 aa22.38■■□□□ 1.17
CCDC88C-205ENST00000553403 SSTR2P30874 369 aa22.38■■□□□ 1.17
CCDC88C-205ENST00000553403 UCP3P55916 312 aa22.38■■□□□ 1.17
CCDC88C-205ENST00000553403 SORDQ00796 357 aa22.38■■□□□ 1.17
CCDC88C-205ENST00000553403 NEK7Q8TDX7 302 aa22.38■■□□□ 1.17
CCDC88C-205ENST00000553403 NRIP2Q9BQI9 281 aa22.38■■□□□ 1.17
CCDC88C-205ENST00000553403 FXYD6Q9H0Q3 95 aa22.38■■□□□ 1.17
CCDC88C-205ENST00000553403 ZFYVE26Q68DK2 2539 aa22.37■■□□□ 1.17
CCDC88C-205ENST00000553403 TRAV14DV4A0A0A6YYC5 116 aa22.37■■□□□ 1.17
CCDC88C-205ENST00000553403 H0YL77 283 aa22.37■■□□□ 1.17
CCDC88C-205ENST00000553403 ZNF728P0DKX0 622 aa22.37■■□□□ 1.17
CCDC88C-205ENST00000553403 SLC9A3R2Q15599 337 aa22.37■■□□□ 1.17
CCDC88C-205ENST00000553403 Q6P435 159 aa22.37■■□□□ 1.17
CCDC88C-205ENST00000553403 GFRALQ6UXV0 394 aa22.37■■□□□ 1.17
CCDC88C-205ENST00000553403 RAB18Q9NP72 206 aa22.37■■□□□ 1.17
CCDC88C-205ENST00000553403 TINAGQ9UJW2 476 aa22.37■■□□□ 1.17
CCDC88C-205ENST00000553403 FXYD6-FXYD2A0A087WZ82 144 aa22.36■■□□□ 1.17
CCDC88C-205ENST00000553403 TRAV24A0A0B4J272 114 aa22.36■■□□□ 1.17
CCDC88C-205ENST00000553403 A0A1B0GWJ7 208 aa22.36■■□□□ 1.17
CCDC88C-205ENST00000553403 POM121CA8CG34 1229 aa22.36■■□□□ 1.17
CCDC88C-205ENST00000553403 DEGS1O15121 323 aa22.36■■□□□ 1.17
CCDC88C-205ENST00000553403 MLNRO43193 412 aa22.36■■□□□ 1.17
CCDC88C-205ENST00000553403 NOS1APO75052 506 aaPredicted RBP22.36■■□□□ 1.17
CCDC88C-205ENST00000553403 FCGR2CP31995 323 aa22.36■■□□□ 1.17
CCDC88C-205ENST00000553403 ZNF83P51522 516 aa22.36■■□□□ 1.17
CCDC88C-205ENST00000553403 OR8H1Q8NGG4 311 aa22.36■■□□□ 1.17
CCDC88C-205ENST00000553403 PIK3IP1Q96FE7 263 aa22.36■■□□□ 1.17
CCDC88C-205ENST00000553403 DPCDQ9BVM2 203 aaPredicted RBP22.36■■□□□ 1.17
CCDC88C-205ENST00000553403 COMMD9Q9P000 198 aa22.36■■□□□ 1.17
CCDC88C-205ENST00000553403 KIR2DS1A0A191URI9 304 aa22.36■■□□□ 1.17
CCDC88C-205ENST00000553403 M0R233 179 aa22.36■■□□□ 1.17
CCDC88C-205ENST00000553403 KIR2DS4P43632 304 aa22.36■■□□□ 1.17
CCDC88C-205ENST00000553403 KIR2DS1Q14954 304 aa22.36■■□□□ 1.17
CCDC88C-205ENST00000553403 OPCMLQ14982 345 aa22.36■■□□□ 1.17
CCDC88C-205ENST00000553403 TEX261Q6UWH6 196 aa22.36■■□□□ 1.17
CCDC88C-205ENST00000553403 GSG1LQ6UXU4 331 aa22.36■■□□□ 1.17
CCDC88C-205ENST00000553403 SLC7A5P1Q8MH63 180 aa22.36■■□□□ 1.17
CCDC88C-205ENST00000553403 MOB3AQ96BX8 217 aa22.36■■□□□ 1.17
CCDC88C-205ENST00000553403 PRORYQ9H606 182 aa22.36■■□□□ 1.17
CCDC88C-205ENST00000553403 SPEF1Q9Y4P9 236 aa22.36■■□□□ 1.17
CCDC88C-205ENST00000553403 U3KQ87 197 aa22.36■■□□□ 1.17
CCDC88C-205ENST00000553403 LOC400499M0QZD8 3231 aa22.35■■□□□ 1.17
CCDC88C-205ENST00000553403 M0R1B8 84 aa22.35■■□□□ 1.17
CCDC88C-205ENST00000553403 CDIPTO14735 213 aa22.35■■□□□ 1.17
CCDC88C-205ENST00000553403 KNG1P01042 644 aa22.35■■□□□ 1.17
CCDC88C-205ENST00000553403 GRPP07492 148 aa22.35■■□□□ 1.17
CCDC88C-205ENST00000553403 SLC25A4P12235 298 aa22.35■■□□□ 1.17
CCDC88C-205ENST00000553403 FABP6P51161 128 aa22.35■■□□□ 1.17
CCDC88C-205ENST00000553403 ANKRD55Q3KP44 614 aa22.35■■□□□ 1.17
CCDC88C-205ENST00000553403 RGS7BPQ6MZT1 257 aaPredicted RBP22.35■■□□□ 1.17
CCDC88C-205ENST00000553403 TMEM65Q6PI78 240 aa22.35■■□□□ 1.17
CCDC88C-205ENST00000553403 MRGPRGQ86SM5 289 aa22.35■■□□□ 1.17
CCDC88C-205ENST00000553403 SGPP2Q8IWX5 399 aa22.35■■□□□ 1.17
CCDC88C-205ENST00000553403 POC1AQ8NBT0 407 aa22.35■■□□□ 1.17
CCDC88C-205ENST00000553403 TLNRD1Q9H1K6 362 aa22.35■■□□□ 1.17
CCDC88C-205ENST00000553403 CRYM-AS1A6NIL9 109 aa22.34■■□□□ 1.17
CCDC88C-205ENST00000553403 TRDCB7Z8K6 153 aa22.34■■□□□ 1.17
CCDC88C-205ENST00000553403 IFNA2P01563 188 aa22.34■■□□□ 1.17
CCDC88C-205ENST00000553403 CTXN2P0C2S0 81 aa22.34■■□□□ 1.17
CCDC88C-205ENST00000553403 SERPINF1P36955 418 aa22.34■■□□□ 1.17
CCDC88C-205ENST00000553403 MDH2P40926 338 aaKnown RBP22.34■■□□□ 1.17
CCDC88C-205ENST00000553403 CYCSP99999 105 aaKnown RBP22.34■■□□□ 1.17
CCDC88C-205ENST00000553403 MZT1Q08AG7 82 aa22.34■■□□□ 1.17
CCDC88C-205ENST00000553403 ZNF146Q15072 292 aa22.34■■□□□ 1.17
CCDC88C-205ENST00000553403 SNRNP40Q96DI7 357 aaKnown RBP22.34■■□□□ 1.17
CCDC88C-205ENST00000553403 SEC22AQ96IW7 307 aa22.34■■□□□ 1.17
CCDC88C-205ENST00000553403 USB1Q9BQ65 265 aaKnown RBP22.34■■□□□ 1.17
CCDC88C-205ENST00000553403 TREM2Q9NZC2 230 aa22.34■■□□□ 1.17
CCDC88C-205ENST00000553403 FAM25EA8MYX2 175 aa22.33■■□□□ 1.17
CCDC88C-205ENST00000553403 HS3ST1O14792 307 aa22.33■■□□□ 1.17
CCDC88C-205ENST00000553403 ARPC5O15511 151 aa22.33■■□□□ 1.17
CCDC88C-205ENST00000553403 RPA2P15927 270 aa22.33■■□□□ 1.17
CCDC88C-205ENST00000553403 SPIN3Q5JUX0 258 aa22.33■■□□□ 1.17
CCDC88C-205ENST00000553403 SHEQ5VZ18 495 aa22.33■■□□□ 1.17
CCDC88C-205ENST00000553403 ZNF880Q6PDB4 577 aa22.33■■□□□ 1.17
CCDC88C-205ENST00000553403 MRPL30Q8TCC3 161 aaKnown RBP22.33■■□□□ 1.17
CCDC88C-205ENST00000553403 NMES1Q9C002 83 aa22.33■■□□□ 1.17
CCDC88C-205ENST00000553403 HES4Q9HCC6 221 aa22.33■■□□□ 1.17
CCDC88C-205ENST00000553403 ATP23Q9Y6H3 246 aa22.33■■□□□ 1.17
CCDC88C-205ENST00000553403 A0A0G2JNJ9 132 aa22.33■■□□□ 1.16
CCDC88C-205ENST00000553403 C5orf51A6NDU8 294 aa22.33■■□□□ 1.16
CCDC88C-205ENST00000553403 HSPB6O14558 160 aa22.33■■□□□ 1.16
Retrieved 100 of 20,778 RNA–protein pairs in 188.8 ms