RNA–Protein interactions for RNA: ENST00000553128.5

VPS29-211, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 449 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-211ENST00000553128 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP10.01□□□□□ -0.81
VPS29-211ENST00000553128 ODAMA1E959 279 aa10□□□□□ -0.81
VPS29-211ENST00000553128 H3BN98 237 aa10□□□□□ -0.81
VPS29-211ENST00000553128 PRODHO43272 600 aa10□□□□□ -0.81
VPS29-211ENST00000553128 OR2H2O95918 312 aa10□□□□□ -0.81
VPS29-211ENST00000553128 OR8U8P0C7N1 319 aa10□□□□□ -0.81
VPS29-211ENST00000553128 PRKACAP17612 351 aa10□□□□□ -0.81
VPS29-211ENST00000553128 POU3F4P49335 361 aa10□□□□□ -0.81
VPS29-211ENST00000553128 RPS7P62081 194 aaKnown RBP10□□□□□ -0.81
VPS29-211ENST00000553128 ROM1Q03395 351 aa10□□□□□ -0.81
VPS29-211ENST00000553128 ZNF616Q08AN1 781 aa10□□□□□ -0.81
VPS29-211ENST00000553128 ODF4Q2M2E3 257 aa10□□□□□ -0.81
VPS29-211ENST00000553128 ZNF829Q3KNS6 432 aaPredicted RBP10□□□□□ -0.81
VPS29-211ENST00000553128 HAPLN4Q86UW8 402 aa10□□□□□ -0.81
VPS29-211ENST00000553128 TGIF2LXQ8IUE1 241 aa10□□□□□ -0.81
VPS29-211ENST00000553128 ELMOD2Q8IZ81 293 aa10□□□□□ -0.81
VPS29-211ENST00000553128 FAM58AQ8N1B3 248 aa10□□□□□ -0.81
VPS29-211ENST00000553128 Q8N6K4 173 aa10□□□□□ -0.81
VPS29-211ENST00000553128 DLX4Q92988 240 aaPredicted RBP10□□□□□ -0.81
VPS29-211ENST00000553128 EAF1Q96JC9 268 aaPredicted RBP10□□□□□ -0.81
VPS29-211ENST00000553128 HRASLS5Q96KN8 279 aa10□□□□□ -0.81
VPS29-211ENST00000553128 NSMCE2Q96MF7 247 aa10□□□□□ -0.81
VPS29-211ENST00000553128 APOL4Q9BPW4 351 aa10□□□□□ -0.81
VPS29-211ENST00000553128 ALX4Q9H161 411 aaPredicted RBP10□□□□□ -0.81
VPS29-211ENST00000553128 PCDHB16Q9NRJ7 776 aa10□□□□□ -0.81
VPS29-211ENST00000553128 C19orf73Q9NVV2 129 aa10□□□□□ -0.81
VPS29-211ENST00000553128 KIAA1456Q9P272 454 aa10□□□□□ -0.81
VPS29-211ENST00000553128 MAGEL2Q9UJ55 1249 aa10□□□□□ -0.81
VPS29-211ENST00000553128 OR52A1Q9UKL2 312 aa10□□□□□ -0.81
VPS29-211ENST00000553128 TRBV2A0A0J9YWF9 115 aa9.99□□□□□ -0.81
VPS29-211ENST00000553128 A0A1W2PPE3 182 aa9.99□□□□□ -0.81
VPS29-211ENST00000553128 HMGB1P1B2RPK0 211 aaPredicted RBP9.99□□□□□ -0.81
VPS29-211ENST00000553128 LOC110117498-PIK3R3F6TDL0 507 aa9.99□□□□□ -0.81
VPS29-211ENST00000553128 OVOL1O14753 267 aa9.99□□□□□ -0.81
VPS29-211ENST00000553128 REG1BP48304 166 aa9.99□□□□□ -0.81
VPS29-211ENST00000553128 RIDAP52758 137 aaKnown RBP9.99□□□□□ -0.81
VPS29-211ENST00000553128 SLURP1P55000 103 aa9.99□□□□□ -0.81
VPS29-211ENST00000553128 GABPB1Q06547 395 aaPredicted RBP9.99□□□□□ -0.81
VPS29-211ENST00000553128 EBI3Q14213 229 aa9.99□□□□□ -0.81
VPS29-211ENST00000553128 MICAQ29983 383 aa9.99□□□□□ -0.81
VPS29-211ENST00000553128 BCL2L15Q5TBC7 163 aa9.99□□□□□ -0.81
VPS29-211ENST00000553128 ENTHD1Q8IYW4 607 aa9.99□□□□□ -0.81
VPS29-211ENST00000553128 KCTD7Q96MP8 289 aa9.99□□□□□ -0.81
VPS29-211ENST00000553128 GON7Q9BXV9 100 aa9.99□□□□□ -0.81
VPS29-211ENST00000553128 YIPF3Q9GZM5 350 aa9.99□□□□□ -0.81
VPS29-211ENST00000553128 PLSCR3Q9NRY6 295 aa9.99□□□□□ -0.81
VPS29-211ENST00000553128 LIN7CQ9NUP9 197 aaKnown RBP9.99□□□□□ -0.81
VPS29-211ENST00000553128 IKZF2Q9UKS7 526 aa9.99□□□□□ -0.81
VPS29-211ENST00000553128 PSG11Q9UQ72 335 aa9.99□□□□□ -0.81
VPS29-211ENST00000553128 GSTK1Q9Y2Q3 226 aa9.99□□□□□ -0.81
VPS29-211ENST00000553128 MAGEA13PA6NCF6 341 aa9.98□□□□□ -0.81
VPS29-211ENST00000553128 CCDC182A6NF36 153 aa9.98□□□□□ -0.81
VPS29-211ENST00000553128 ZNF254O75437 659 aa9.98□□□□□ -0.81
VPS29-211ENST00000553128 CGB3P0DN86 165 aa9.98□□□□□ -0.81
VPS29-211ENST00000553128 CGB7P0DN87 165 aa9.98□□□□□ -0.81
VPS29-211ENST00000553128 GNG10P50151 68 aa9.98□□□□□ -0.81
VPS29-211ENST00000553128 FUT6P51993 359 aa9.98□□□□□ -0.81
VPS29-211ENST00000553128 MADCAM1Q13477 382 aa9.98□□□□□ -0.81
VPS29-211ENST00000553128 APOFQ13790 326 aa9.98□□□□□ -0.81
VPS29-211ENST00000553128 GINS1Q14691 196 aa9.98□□□□□ -0.81
VPS29-211ENST00000553128 ATXN7L3Q14CW9 347 aaPredicted RBP9.98□□□□□ -0.81
VPS29-211ENST00000553128 LTC4SQ16873 150 aa9.98□□□□□ -0.81
VPS29-211ENST00000553128 KRBOX4Q5JUW0 171 aa9.98□□□□□ -0.81
VPS29-211ENST00000553128 SLC35D3Q5M8T2 416 aa9.98□□□□□ -0.81
VPS29-211ENST00000553128 OR8H3Q8N146 312 aa9.98□□□□□ -0.81
VPS29-211ENST00000553128 ZNF491Q8N8L2 437 aa9.98□□□□□ -0.81
VPS29-211ENST00000553128 SPATA25Q9BR10 227 aa9.98□□□□□ -0.81
VPS29-211ENST00000553128 RETNQ9HD89 108 aa9.98□□□□□ -0.81
VPS29-211ENST00000553128 HMG20AQ9NP66 347 aa9.98□□□□□ -0.81
VPS29-211ENST00000553128 EXOSC4Q9NPD3 245 aaKnown RBP9.98□□□□□ -0.81
VPS29-211ENST00000553128 GLS2Q9UI32 602 aa9.98□□□□□ -0.81
VPS29-211ENST00000553128 AMMECR1Q9Y4X0 333 aaPredicted RBP9.98□□□□□ -0.81
VPS29-211ENST00000553128 R4GMQ9 66 aa9.98□□□□□ -0.81
VPS29-211ENST00000553128 IGKV1-12A0A0C4DH73 117 aa9.97□□□□□ -0.81
VPS29-211ENST00000553128 KBTBD11-OT1A0A1B0GTJ5 212 aa9.97□□□□□ -0.81
VPS29-211ENST00000553128 ZNF729A6NN14 1252 aaPredicted RBP9.97□□□□□ -0.81
VPS29-211ENST00000553128 DHRS7CA6NNS2 312 aa9.97□□□□□ -0.81
VPS29-211ENST00000553128 IGKV1D-12P01611 117 aa9.97□□□□□ -0.81
VPS29-211ENST00000553128 HSD17B1P14061 328 aa9.97□□□□□ -0.81
VPS29-211ENST00000553128 VDAC1P21796 283 aa9.97□□□□□ -0.81
VPS29-211ENST00000553128 CCL1P22362 96 aa9.97□□□□□ -0.81
VPS29-211ENST00000553128 MAGEA2P43356 314 aa9.97□□□□□ -0.81
VPS29-211ENST00000553128 RAB7AP51149 207 aa9.97□□□□□ -0.81
VPS29-211ENST00000553128 CDC42P60953 191 aa9.97□□□□□ -0.81
VPS29-211ENST00000553128 RUNX1Q01196 453 aa9.97□□□□□ -0.81
VPS29-211ENST00000553128 SCN1BQ07699 218 aa9.97□□□□□ -0.81
VPS29-211ENST00000553128 HAGHQ16775 308 aa9.97□□□□□ -0.81
VPS29-211ENST00000553128 SPIN3Q5JUX0 258 aa9.97□□□□□ -0.81
VPS29-211ENST00000553128 CD300LDQ6UXZ3 194 aa9.97□□□□□ -0.81
VPS29-211ENST00000553128 MOB3BQ86TA1 216 aa9.97□□□□□ -0.81
VPS29-211ENST00000553128 Q8IYB0 196 aa9.97□□□□□ -0.81
VPS29-211ENST00000553128 FAM71E2Q8N5Q1 922 aa9.97□□□□□ -0.81
VPS29-211ENST00000553128 OR10G2Q8NGC3 310 aa9.97□□□□□ -0.81
VPS29-211ENST00000553128 OR13A1Q8NGR1 328 aa9.97□□□□□ -0.81
VPS29-211ENST00000553128 ARPC1AQ92747 370 aa9.97□□□□□ -0.81
VPS29-211ENST00000553128 ST6GALNAC6Q969X2 333 aa9.97□□□□□ -0.81
VPS29-211ENST00000553128 BORCS8Q96FH0 119 aa9.97□□□□□ -0.81
VPS29-211ENST00000553128 UBE2E2Q96LR5 201 aa9.97□□□□□ -0.81
VPS29-211ENST00000553128 FEVQ99581 238 aa9.97□□□□□ -0.81
VPS29-211ENST00000553128 SAMHD1Q9Y3Z3 626 aaKnown RBP9.97□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms