RNA–Protein interactions for RNA: ENST00000541204.5

RNF4-222, Transcript of ring finger protein 4, humanhuman

TSL 1 (best) BASIC

Gene RNF4, Length 2,796 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-222ENST00000541204 HSD17B11Q8NBQ5 300 aa10.81□□□□□ -0.68
RNF4-222ENST00000541204 OR1F12Q8NHA8 337 aa10.81□□□□□ -0.68
RNF4-222ENST00000541204 NANPQ8TBE9 248 aa10.81□□□□□ -0.68
RNF4-222ENST00000541204 INTS12Q96CB8 462 aaKnown RBP10.81□□□□□ -0.68
RNF4-222ENST00000541204 CALHM2Q9HA72 323 aa10.81□□□□□ -0.68
RNF4-222ENST00000541204 SLC2A9Q9NRM0 540 aa10.81□□□□□ -0.68
RNF4-222ENST00000541204 BORCS7-ASMTA0A0B4J1R7 106 aa10.81□□□□□ -0.68
RNF4-222ENST00000541204 A6NLC8 198 aa10.81□□□□□ -0.68
RNF4-222ENST00000541204 GPR137BO60478 399 aa10.81□□□□□ -0.68
RNF4-222ENST00000541204 S100A6P06703 90 aa10.81□□□□□ -0.68
RNF4-222ENST00000541204 CHATP28329 748 aa10.81□□□□□ -0.68
RNF4-222ENST00000541204 P2RY1P47900 373 aa10.81□□□□□ -0.68
RNF4-222ENST00000541204 ASCL1P50553 236 aa10.81□□□□□ -0.68
RNF4-222ENST00000541204 HMGN3Q15651 99 aa10.81□□□□□ -0.68
RNF4-222ENST00000541204 EIF2S3LQ2VIR3 472 aaKnown RBP10.81□□□□□ -0.68
RNF4-222ENST00000541204 SLC16A13Q7RTY0 426 aa10.81□□□□□ -0.68
RNF4-222ENST00000541204 IL22RA1Q8N6P7 574 aa10.81□□□□□ -0.68
RNF4-222ENST00000541204 OR10AD1Q8NGE0 317 aa10.81□□□□□ -0.68
RNF4-222ENST00000541204 SPSB1Q96BD6 273 aa10.81□□□□□ -0.68
RNF4-222ENST00000541204 GALNT14Q96FL9 552 aa10.81□□□□□ -0.68
RNF4-222ENST00000541204 C19orf12Q9NSK7 152 aa10.81□□□□□ -0.68
RNF4-222ENST00000541204 LUZP4Q9P127 313 aa10.81□□□□□ -0.68
RNF4-222ENST00000541204 HSF4Q9ULV5 492 aa10.81□□□□□ -0.68
RNF4-222ENST00000541204 DNAJC13O75165 2243 aa10.81□□□□□ -0.68
RNF4-222ENST00000541204 DMXL1Q9Y485 3027 aa10.8□□□□□ -0.68
RNF4-222ENST00000541204 COL27A1Q8IZC6 1860 aaPredicted RBP10.8□□□□□ -0.68
RNF4-222ENST00000541204 IGKV1-12A0A0C4DH73 117 aa10.8□□□□□ -0.68
RNF4-222ENST00000541204 A0A1W2PPH5 198 aa10.8□□□□□ -0.68
RNF4-222ENST00000541204 C5orf52A6NGY3 159 aa10.8□□□□□ -0.68
RNF4-222ENST00000541204 SYNGR3O43761 229 aa10.8□□□□□ -0.68
RNF4-222ENST00000541204 IGKV1D-12P01611 117 aa10.8□□□□□ -0.68
RNF4-222ENST00000541204 CCL2P13500 99 aa10.8□□□□□ -0.68
RNF4-222ENST00000541204 PLGLB1Q02325 96 aa10.8□□□□□ -0.68
RNF4-222ENST00000541204 RAB35Q15286 201 aa10.8□□□□□ -0.68
RNF4-222ENST00000541204 FBXW12Q6X9E4 464 aa10.8□□□□□ -0.68
RNF4-222ENST00000541204 LIAT1Q6ZQX7 453 aa10.8□□□□□ -0.68
RNF4-222ENST00000541204 C18orf12Q96KH6 178 aa10.8□□□□□ -0.68
RNF4-222ENST00000541204 GINS3Q9BRX5 216 aa10.8□□□□□ -0.68
RNF4-222ENST00000541204 GPR35Q9HC97 309 aa10.8□□□□□ -0.68
RNF4-222ENST00000541204 NOSIPQ9Y314 301 aaKnown RBP10.8□□□□□ -0.68
RNF4-222ENST00000541204 FBXO7Q9Y3I1 522 aa10.8□□□□□ -0.68
RNF4-222ENST00000541204 MT-ND4LP03901 98 aa10.8□□□□□ -0.68
RNF4-222ENST00000541204 CRYGSP22914 178 aa10.8□□□□□ -0.68
RNF4-222ENST00000541204 DTYMKP23919 212 aa10.8□□□□□ -0.68
RNF4-222ENST00000541204 RBP2P50120 134 aa10.8□□□□□ -0.68
RNF4-222ENST00000541204 S100A12P80511 92 aa10.8□□□□□ -0.68
RNF4-222ENST00000541204 LILRB1Q8NHL6 650 aaPredicted RBP10.8□□□□□ -0.68
RNF4-222ENST00000541204 HPSE2Q8WWQ2 592 aa10.8□□□□□ -0.68
RNF4-222ENST00000541204 MSI2Q96DH6 328 aaKnown RBP10.8□□□□□ -0.68
RNF4-222ENST00000541204 BORCS8Q96FH0 119 aa10.8□□□□□ -0.68
RNF4-222ENST00000541204 FAM173AQ9BQD7 235 aa10.8□□□□□ -0.68
RNF4-222ENST00000541204 ZNF703Q9H7S9 590 aaPredicted RBP10.8□□□□□ -0.68
RNF4-222ENST00000541204 ZFHX4Q86UP3 3567 aa10.8□□□□□ -0.68
RNF4-222ENST00000541204 hCG_1809904A0A1W2PP81 198 aa10.79□□□□□ -0.68
RNF4-222ENST00000541204 A0A1W2PR64 198 aa10.79□□□□□ -0.68
RNF4-222ENST00000541204 A0A1W2PRV1 198 aa10.79□□□□□ -0.68
RNF4-222ENST00000541204 UMAD1C9J7I0 102 aa10.79□□□□□ -0.68
RNF4-222ENST00000541204 H7C1Q1 480 aa10.79□□□□□ -0.68
RNF4-222ENST00000541204 PHF1O43189 567 aaPredicted RBP10.79□□□□□ -0.68
RNF4-222ENST00000541204 MRPL33O75394 65 aaKnown RBP10.79□□□□□ -0.68
RNF4-222ENST00000541204 ARG1P05089 322 aa10.79□□□□□ -0.68
RNF4-222ENST00000541204 DUSP1P28562 367 aa10.79□□□□□ -0.68
RNF4-222ENST00000541204 FOXG1P55316 489 aaPredicted RBP10.79□□□□□ -0.68
RNF4-222ENST00000541204 UCP2P55851 309 aa10.79□□□□□ -0.68
RNF4-222ENST00000541204 ABLIM2Q6H8Q1 611 aa10.79□□□□□ -0.68
RNF4-222ENST00000541204 TUSC5Q8IXB3 177 aa10.79□□□□□ -0.68
RNF4-222ENST00000541204 FBXL14Q8N1E6 418 aa10.79□□□□□ -0.68
RNF4-222ENST00000541204 CPT1CQ8TCG5 803 aa10.79□□□□□ -0.68
RNF4-222ENST00000541204 CPNE4Q96A23 557 aaPredicted RBP10.79□□□□□ -0.68
RNF4-222ENST00000541204 SUCNR1Q9BXA5 334 aa10.79□□□□□ -0.68
RNF4-222ENST00000541204 TTTY12Q9BZ98 90 aa10.79□□□□□ -0.68
RNF4-222ENST00000541204 FREM1Q5H8C1 2179 aa10.79□□□□□ -0.68
RNF4-222ENST00000541204 SHANK1Q9Y566 2161 aa10.79□□□□□ -0.68
RNF4-222ENST00000541204 DNPH1O43598 174 aa10.79□□□□□ -0.68
RNF4-222ENST00000541204 HOXB1P14653 301 aaPredicted RBP10.79□□□□□ -0.68
RNF4-222ENST00000541204 AGAP20933 346 aa10.79□□□□□ -0.68
RNF4-222ENST00000541204 CNN3Q15417 329 aaKnown RBP10.79□□□□□ -0.68
RNF4-222ENST00000541204 RNF212Q495C1 297 aa10.79□□□□□ -0.68
RNF4-222ENST00000541204 GPR157Q5UAW9 335 aa10.79□□□□□ -0.68
RNF4-222ENST00000541204 MEX3BQ6ZN04 569 aaKnown RBP10.79□□□□□ -0.68
RNF4-222ENST00000541204 TMEM182Q6ZP80 229 aaPredicted RBP10.79□□□□□ -0.68
RNF4-222ENST00000541204 ZNF561Q8N587 486 aa10.79□□□□□ -0.68
RNF4-222ENST00000541204 CD300LFQ8TDQ1 290 aa10.79□□□□□ -0.68
RNF4-222ENST00000541204 PRRG4Q9BZD6 226 aa10.79□□□□□ -0.68
RNF4-222ENST00000541204 OR2H1Q9GZK4 316 aa10.79□□□□□ -0.68
RNF4-222ENST00000541204 WNT5BQ9H1J7 359 aa10.79□□□□□ -0.68
RNF4-222ENST00000541204 RCL1Q9Y2P8 373 aaKnown RBP10.79□□□□□ -0.68
RNF4-222ENST00000541204 UBE2CO00762 179 aa10.78□□□□□ -0.68
RNF4-222ENST00000541204 ST8SIA3O43173 380 aa10.78□□□□□ -0.68
RNF4-222ENST00000541204 CST2P09228 141 aa10.78□□□□□ -0.68
RNF4-222ENST00000541204 ZNF806P0C7X5 589 aa10.78□□□□□ -0.68
RNF4-222ENST00000541204 OR13C7P0DN81 318 aa10.78□□□□□ -0.68
RNF4-222ENST00000541204 ZNF14P17017 642 aaPredicted RBP10.78□□□□□ -0.68
RNF4-222ENST00000541204 Q6ZPA2 131 aa10.78□□□□□ -0.68
RNF4-222ENST00000541204 OSR2Q8N2R0 312 aa10.78□□□□□ -0.68
RNF4-222ENST00000541204 FAM24BQ8N5W8 94 aa10.78□□□□□ -0.68
RNF4-222ENST00000541204 COMMD1Q8N668 190 aa10.78□□□□□ -0.68
RNF4-222ENST00000541204 LRTM2Q8N967 370 aa10.78□□□□□ -0.68
RNF4-222ENST00000541204 GPR87Q9BY21 358 aa10.78□□□□□ -0.68
RNF4-222ENST00000541204 SLC7A10Q9NS82 523 aa10.78□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 60.1 ms