RNA–Protein interactions for RNA: ENST00000541108.1

CLIP1-215, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 1,658 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-215ENST00000541108 NAPSAO96009 420 aa14.9□□□□□ -0.02
CLIP1-215ENST00000541108 FCGR3AP08637 254 aa14.9□□□□□ -0.02
CLIP1-215ENST00000541108 SPNP16150 400 aa14.9□□□□□ -0.02
CLIP1-215ENST00000541108 GIFP27352 417 aa14.9□□□□□ -0.02
CLIP1-215ENST00000541108 KCNJ3P48549 501 aa14.9□□□□□ -0.02
CLIP1-215ENST00000541108 TAS2R46P59540 309 aa14.9□□□□□ -0.02
CLIP1-215ENST00000541108 PAN3Q58A45 887 aaKnown RBP14.9□□□□□ -0.02
CLIP1-215ENST00000541108 RNASE10Q5GAN6 216 aaKnown RBP14.9□□□□□ -0.02
CLIP1-215ENST00000541108 OR52W1Q6IF63 320 aa14.9□□□□□ -0.02
CLIP1-215ENST00000541108 C1orf87Q8N0U7 546 aa14.9□□□□□ -0.02
CLIP1-215ENST00000541108 OR4K15Q8NH41 348 aa14.9□□□□□ -0.02
CLIP1-215ENST00000541108 NEK7Q8TDX7 302 aa14.9□□□□□ -0.02
CLIP1-215ENST00000541108 OR14J1Q9UGF5 321 aa14.9□□□□□ -0.02
CLIP1-215ENST00000541108 WIPI2Q9Y4P8 454 aa14.9□□□□□ -0.02
CLIP1-215ENST00000541108 FCER2P06734 321 aa14.89□□□□□ -0.03
CLIP1-215ENST00000541108 PSG2P11465 335 aa14.89□□□□□ -0.03
CLIP1-215ENST00000541108 MUC1P15941 1255 aaPredicted RBP14.89□□□□□ -0.03
CLIP1-215ENST00000541108 MICBQ29980 383 aa14.89□□□□□ -0.03
CLIP1-215ENST00000541108 Q6ZS49 121 aa14.89□□□□□ -0.03
CLIP1-215ENST00000541108 BPIFB2Q8N4F0 458 aa14.89□□□□□ -0.03
CLIP1-215ENST00000541108 OR4D10Q8NGI6 311 aa14.89□□□□□ -0.03
CLIP1-215ENST00000541108 CREB3L1Q96BA8 519 aa14.89□□□□□ -0.03
CLIP1-215ENST00000541108 HDHD3Q9BSH5 251 aaPredicted RBP14.89□□□□□ -0.03
CLIP1-215ENST00000541108 MARVELD1Q9BSK0 173 aa14.89□□□□□ -0.03
CLIP1-215ENST00000541108 ETAA1Q9NY74 926 aa14.89□□□□□ -0.03
CLIP1-215ENST00000541108 ZNF230Q9UIE0 474 aaPredicted RBP14.89□□□□□ -0.03
CLIP1-215ENST00000541108 FLNCQ14315 2725 aa14.89□□□□□ -0.03
CLIP1-215ENST00000541108 UBR5O95071 2799 aaPredicted RBP14.88□□□□□ -0.03
CLIP1-215ENST00000541108 TRBV6-6A0A0A6YYG2 114 aa14.88□□□□□ -0.03
CLIP1-215ENST00000541108 A0A1W2PPR1 153 aa14.88□□□□□ -0.03
CLIP1-215ENST00000541108 SIRPB1O00241 398 aa14.88□□□□□ -0.03
CLIP1-215ENST00000541108 CD8AP01732 235 aa14.88□□□□□ -0.03
CLIP1-215ENST00000541108 TCRBP04435 133 aa14.88□□□□□ -0.03
CLIP1-215ENST00000541108 PRDX2P32119 198 aa14.88□□□□□ -0.03
CLIP1-215ENST00000541108 VAX1Q5SQQ9 334 aa14.88□□□□□ -0.03
CLIP1-215ENST00000541108 TEX36Q5VZQ5 186 aa14.88□□□□□ -0.03
CLIP1-215ENST00000541108 SFRP4Q6FHJ7 346 aaPredicted RBP14.88□□□□□ -0.03
CLIP1-215ENST00000541108 C11orf71Q6IPW1 123 aa14.88□□□□□ -0.03
CLIP1-215ENST00000541108 ZNF782Q6ZMW2 699 aaPredicted RBP14.88□□□□□ -0.03
CLIP1-215ENST00000541108 GAPTQ8N292 157 aa14.88□□□□□ -0.03
CLIP1-215ENST00000541108 OR5AP2Q8NGF4 316 aa14.88□□□□□ -0.03
CLIP1-215ENST00000541108 RAB1BQ9H0U4 201 aa14.88□□□□□ -0.03
CLIP1-215ENST00000541108 TMEM165Q9HC07 324 aa14.88□□□□□ -0.03
CLIP1-215ENST00000541108 ANXA10Q9UJ72 324 aa14.88□□□□□ -0.03
CLIP1-215ENST00000541108 NUBP2Q9Y5Y2 271 aa14.88□□□□□ -0.03
CLIP1-215ENST00000541108 USP9XQ93008 2570 aaPredicted RBP14.88□□□□□ -0.03
CLIP1-215ENST00000541108 DISC1C4P0D8 188 aa14.87□□□□□ -0.03
CLIP1-215ENST00000541108 HSPB6O14558 160 aa14.87□□□□□ -0.03
CLIP1-215ENST00000541108 CYB5R3P00387 301 aaPredicted RBP14.87□□□□□ -0.03
CLIP1-215ENST00000541108 AMY2BP19961 511 aa14.87□□□□□ -0.03
CLIP1-215ENST00000541108 HRH1P35367 487 aa14.87□□□□□ -0.03
CLIP1-215ENST00000541108 CCR6P51684 374 aa14.87□□□□□ -0.03
CLIP1-215ENST00000541108 ZMYND11Q15326 602 aa14.87□□□□□ -0.03
CLIP1-215ENST00000541108 FAAP20Q6NZ36 180 aa14.87□□□□□ -0.03
CLIP1-215ENST00000541108 DYRK2Q92630 601 aa14.87□□□□□ -0.03
CLIP1-215ENST00000541108 VRK1Q99986 396 aaPredicted RBP14.87□□□□□ -0.03
CLIP1-215ENST00000541108 TINAGL1Q9GZM7 467 aaPredicted RBP14.87□□□□□ -0.03
CLIP1-215ENST00000541108 MMP28Q9H239 520 aa14.87□□□□□ -0.03
CLIP1-215ENST00000541108 TMEM106BQ9NUM4 274 aa14.87□□□□□ -0.03
CLIP1-215ENST00000541108 SLC2A8Q9NY64 477 aa14.87□□□□□ -0.03
CLIP1-215ENST00000541108 SCP2D1Q9UJQ7 156 aa14.87□□□□□ -0.03
CLIP1-215ENST00000541108 IGKV1D-17A0A075B6S4 117 aa14.87□□□□□ -0.03
CLIP1-215ENST00000541108 TMEM178BH3BS89 294 aa14.87□□□□□ -0.03
CLIP1-215ENST00000541108 PYCARD-AS1I3L0S3 204 aa14.87□□□□□ -0.03
CLIP1-215ENST00000541108 PSPNO60542 156 aa14.87□□□□□ -0.03
CLIP1-215ENST00000541108 AMY2AP04746 511 aa14.87□□□□□ -0.03
CLIP1-215ENST00000541108 CSN2P05814 226 aa14.87□□□□□ -0.03
CLIP1-215ENST00000541108 SOD3P08294 240 aa14.87□□□□□ -0.03
CLIP1-215ENST00000541108 ZNF735P0CB33 412 aa14.87□□□□□ -0.03
CLIP1-215ENST00000541108 OR3A3P47888 321 aa14.87□□□□□ -0.03
CLIP1-215ENST00000541108 RAG2P55895 527 aa14.87□□□□□ -0.03
CLIP1-215ENST00000541108 HOXA4Q00056 320 aaPredicted RBP14.87□□□□□ -0.03
CLIP1-215ENST00000541108 PAX5Q02548 391 aa14.87□□□□□ -0.03
CLIP1-215ENST00000541108 CHRFAM7AQ494W8 412 aa14.87□□□□□ -0.03
CLIP1-215ENST00000541108 ARRDC1Q8N5I2 433 aa14.87□□□□□ -0.03
CLIP1-215ENST00000541108 CD177Q8N6Q3 437 aa14.87□□□□□ -0.03
CLIP1-215ENST00000541108 BOLLQ8N9W6 283 aaKnown RBP14.87□□□□□ -0.03
CLIP1-215ENST00000541108 OR51S1Q8NGJ8 323 aa14.87□□□□□ -0.03
CLIP1-215ENST00000541108 OR56B4Q8NH76 319 aa14.87□□□□□ -0.03
CLIP1-215ENST00000541108 ANGPTL6Q8NI99 470 aa14.87□□□□□ -0.03
CLIP1-215ENST00000541108 PPP1R35Q8TAP8 253 aa14.87□□□□□ -0.03
CLIP1-215ENST00000541108 PRRT1Q99946 306 aa14.87□□□□□ -0.03
CLIP1-215ENST00000541108 TRAF4Q9BUZ4 470 aaPredicted RBP14.87□□□□□ -0.03
CLIP1-215ENST00000541108 ZNF286AQ9HBT8 521 aa14.87□□□□□ -0.03
CLIP1-215ENST00000541108 CHMP1AQ9HD42 196 aaPredicted RBP14.87□□□□□ -0.03
CLIP1-215ENST00000541108 CHD6Q8TD26 2715 aa14.86□□□□□ -0.03
CLIP1-215ENST00000541108 IGHV1-69-2A0A0G2JMI3 117 aa14.86□□□□□ -0.03
CLIP1-215ENST00000541108 CLEC18AA5D8T8 446 aa14.86□□□□□ -0.03
CLIP1-215ENST00000541108 OOEPA6NGQ2 149 aa14.86□□□□□ -0.03
CLIP1-215ENST00000541108 M0QYG6 137 aa14.86□□□□□ -0.03
CLIP1-215ENST00000541108 HPXP02790 462 aa14.86□□□□□ -0.03
CLIP1-215ENST00000541108 IFNA6P05013 189 aa14.86□□□□□ -0.03
CLIP1-215ENST00000541108 COL10A1Q03692 680 aa14.86□□□□□ -0.03
CLIP1-215ENST00000541108 RBMS2Q15434 407 aaKnown RBP14.86□□□□□ -0.03
CLIP1-215ENST00000541108 GRK1Q15835 563 aa14.86□□□□□ -0.03
CLIP1-215ENST00000541108 CLEC18BQ6UXF7 455 aa14.86□□□□□ -0.03
CLIP1-215ENST00000541108 ZNF497Q6ZNH5 498 aa14.86□□□□□ -0.03
CLIP1-215ENST00000541108 BTN2A1Q7KYR7 527 aa14.86□□□□□ -0.03
CLIP1-215ENST00000541108 OVCH2Q7RTZ1 564 aa14.86□□□□□ -0.03
CLIP1-215ENST00000541108 CLEC18CQ8NCF0 446 aa14.86□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms