RNA–Protein interactions for RNA: ENST00000540428.1

CBX3P4-202, Transcript of chromobox 3 pseudogene 4, humanhuman

TSL 2 BASIC

Gene CBX3P4, Length 423 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CBX3P4-202ENST00000540428 FAM90A16PA6NEW6 464 aa9.54□□□□□ -0.88
CBX3P4-202ENST00000540428 FAM90A20PA6NIJ5 464 aa9.54□□□□□ -0.88
CBX3P4-202ENST00000540428 FAM90A9PA6NNJ1 464 aa9.54□□□□□ -0.88
CBX3P4-202ENST00000540428 FAM90A12PA8MX19 464 aa9.54□□□□□ -0.88
CBX3P4-202ENST00000540428 FAM90A5PA8MXJ8 464 aa9.54□□□□□ -0.88
CBX3P4-202ENST00000540428 APOL3O95236 402 aa9.54□□□□□ -0.88
CBX3P4-202ENST00000540428 IGKV1D-12P01611 117 aa9.54□□□□□ -0.88
CBX3P4-202ENST00000540428 MT-ND2P03891 347 aa9.54□□□□□ -0.88
CBX3P4-202ENST00000540428 FAM90A15PP0C7V4 464 aa9.54□□□□□ -0.88
CBX3P4-202ENST00000540428 FAM90A13PP0C7W8 464 aa9.54□□□□□ -0.88
CBX3P4-202ENST00000540428 FAM90A14PP0C7W9 464 aa9.54□□□□□ -0.88
CBX3P4-202ENST00000540428 FAM90A24PP0C7X0 464 aa9.54□□□□□ -0.88
CBX3P4-202ENST00000540428 FAM106CPP0CH98 169 aa9.54□□□□□ -0.88
CBX3P4-202ENST00000540428 ZNF20P17024 532 aa9.54□□□□□ -0.88
CBX3P4-202ENST00000540428 GDNFP39905 211 aa9.54□□□□□ -0.88
CBX3P4-202ENST00000540428 GLIPR1P48060 266 aa9.54□□□□□ -0.88
CBX3P4-202ENST00000540428 SNU13P55769 128 aaKnown RBP9.54□□□□□ -0.88
CBX3P4-202ENST00000540428 ZNF85Q03923 595 aa9.54□□□□□ -0.88
CBX3P4-202ENST00000540428 AESQ08117 197 aa9.54□□□□□ -0.88
CBX3P4-202ENST00000540428 C11orf87Q6NUJ2 197 aa9.54□□□□□ -0.88
CBX3P4-202ENST00000540428 FDX2Q6P4F2 183 aa9.54□□□□□ -0.88
CBX3P4-202ENST00000540428 C10orf99Q6UWK7 81 aa9.54□□□□□ -0.88
CBX3P4-202ENST00000540428 KCTD20Q7Z5Y7 419 aa9.54□□□□□ -0.88
CBX3P4-202ENST00000540428 MRPL41Q8IXM3 137 aaKnown RBP9.54□□□□□ -0.88
CBX3P4-202ENST00000540428 SAXO1Q8IYX7 474 aa9.54□□□□□ -0.88
CBX3P4-202ENST00000540428 OR2G2Q8NGZ5 317 aa9.54□□□□□ -0.88
CBX3P4-202ENST00000540428 OR9G1Q8NH87 305 aa9.54□□□□□ -0.88
CBX3P4-202ENST00000540428 FGGYQ96C11 551 aa9.54□□□□□ -0.88
CBX3P4-202ENST00000540428 SLC7A6OSQ96CW6 309 aaPredicted RBP9.54□□□□□ -0.88
CBX3P4-202ENST00000540428 MCRIP2Q9BUT9 160 aaKnown RBP9.54□□□□□ -0.88
CBX3P4-202ENST00000540428 NEK6Q9HC98 313 aa9.54□□□□□ -0.88
CBX3P4-202ENST00000540428 OR6C3Q9NZP0 311 aa9.54□□□□□ -0.88
CBX3P4-202ENST00000540428 GNG8Q9UK08 70 aa9.54□□□□□ -0.88
CBX3P4-202ENST00000540428 KMT2CQ8NEZ4 4911 aaKnown RBP9.53□□□□□ -0.88
CBX3P4-202ENST00000540428 PSMB11A5LHX3 300 aa9.53□□□□□ -0.88
CBX3P4-202ENST00000540428 FAM172BPA6NC97 362 aa9.53□□□□□ -0.88
CBX3P4-202ENST00000540428 OCM2P0CE71 109 aa9.53□□□□□ -0.88
CBX3P4-202ENST00000540428 OCMP0CE72 109 aaPredicted RBP9.53□□□□□ -0.88
CBX3P4-202ENST00000540428 CALCBP10092 127 aa9.53□□□□□ -0.88
CBX3P4-202ENST00000540428 ZNF44P15621 663 aa9.53□□□□□ -0.88
CBX3P4-202ENST00000540428 FASP25445 335 aa9.53□□□□□ -0.88
CBX3P4-202ENST00000540428 CCR9P51686 369 aa9.53□□□□□ -0.88
CBX3P4-202ENST00000540428 CD69Q07108 199 aa9.53□□□□□ -0.88
CBX3P4-202ENST00000540428 TP53I3Q53FA7 332 aa9.53□□□□□ -0.88
CBX3P4-202ENST00000540428 C9orf152Q5JTZ5 239 aa9.53□□□□□ -0.88
CBX3P4-202ENST00000540428 KRBOX4Q5JUW0 171 aa9.53□□□□□ -0.88
CBX3P4-202ENST00000540428 Q6P435 159 aa9.53□□□□□ -0.88
CBX3P4-202ENST00000540428 ETV3LQ6ZN32 361 aa9.53□□□□□ -0.88
CBX3P4-202ENST00000540428 BCAS4Q8TDM0 211 aa9.53□□□□□ -0.88
CBX3P4-202ENST00000540428 EME1Q96AY2 570 aa9.53□□□□□ -0.88
CBX3P4-202ENST00000540428 CIB1Q99828 191 aa9.53□□□□□ -0.88
CBX3P4-202ENST00000540428 B9D2Q9BPU9 175 aa9.53□□□□□ -0.88
CBX3P4-202ENST00000540428 GABARAPL3Q9BY60 117 aa9.53□□□□□ -0.88
CBX3P4-202ENST00000540428 NCOR1P1Q9H4R4 102 aa9.53□□□□□ -0.88
CBX3P4-202ENST00000540428 ZFP57Q9NU63 452 aa9.53□□□□□ -0.88
CBX3P4-202ENST00000540428 FRRS1LQ9P0K9 344 aa9.53□□□□□ -0.88
CBX3P4-202ENST00000540428 ZMAT5Q9UDW3 170 aaKnown RBP9.53□□□□□ -0.88
CBX3P4-202ENST00000540428 AMMECR1Q9Y4X0 333 aaPredicted RBP9.53□□□□□ -0.88
CBX3P4-202ENST00000540428 KBTBD11-OT1A0A1B0GTJ5 212 aa9.52□□□□□ -0.89
CBX3P4-202ENST00000540428 SH2D7A6NKC9 451 aaPredicted RBP9.52□□□□□ -0.89
CBX3P4-202ENST00000540428 SLC33A1O00400 549 aaPredicted RBP9.52□□□□□ -0.89
CBX3P4-202ENST00000540428 FGF16O43320 207 aa9.52□□□□□ -0.89
CBX3P4-202ENST00000540428 CGB3P0DN86 165 aa9.52□□□□□ -0.89
CBX3P4-202ENST00000540428 CGB7P0DN87 165 aa9.52□□□□□ -0.89
CBX3P4-202ENST00000540428 DBTP11182 482 aaKnown RBP9.52□□□□□ -0.89
CBX3P4-202ENST00000540428 HOXD3P31249 432 aaPredicted RBP9.52□□□□□ -0.89
CBX3P4-202ENST00000540428 OR3A4PP47883 348 aa9.52□□□□□ -0.89
CBX3P4-202ENST00000540428 THBS3P49746 956 aa9.52□□□□□ -0.89
CBX3P4-202ENST00000540428 RPL23AP62750 156 aaKnown RBP9.52□□□□□ -0.89
CBX3P4-202ENST00000540428 C17orf58Q2M2W7 97 aa9.52□□□□□ -0.89
CBX3P4-202ENST00000540428 COMMD1Q8N668 190 aa9.52□□□□□ -0.89
CBX3P4-202ENST00000540428 CHPT1Q8WUD6 406 aa9.52□□□□□ -0.89
CBX3P4-202ENST00000540428 TRUB1Q8WWH5 349 aaKnown RBP9.52□□□□□ -0.89
CBX3P4-202ENST00000540428 TOMM40LQ969M1 308 aa9.52□□□□□ -0.89
CBX3P4-202ENST00000540428 RFT1Q96AA3 541 aa9.52□□□□□ -0.89
CBX3P4-202ENST00000540428 RPEQ96AT9 228 aa9.52□□□□□ -0.89
CBX3P4-202ENST00000540428 COQ2Q96H96 371 aa9.52□□□□□ -0.89
CBX3P4-202ENST00000540428 KIRREL1Q96J84 757 aa9.52□□□□□ -0.89
CBX3P4-202ENST00000540428 WWC2-AS2Q96NR7 200 aa9.52□□□□□ -0.89
CBX3P4-202ENST00000540428 J3QR06 171 aa9.51□□□□□ -0.89
CBX3P4-202ENST00000540428 DEGS1O15121 323 aa9.51□□□□□ -0.89
CBX3P4-202ENST00000540428 SLC16A6O15403 523 aa9.51□□□□□ -0.89
CBX3P4-202ENST00000540428 FCGR1AP12314 374 aa9.51□□□□□ -0.89
CBX3P4-202ENST00000540428 POLR2IP36954 125 aaKnown RBP9.51□□□□□ -0.89
CBX3P4-202ENST00000540428 MYCNOSP40205 109 aa9.51□□□□□ -0.89
CBX3P4-202ENST00000540428 NANOS3P60323 173 aaKnown RBP9.51□□□□□ -0.89
CBX3P4-202ENST00000540428 RBM39Q14498 530 aaKnown RBP9.51□□□□□ -0.89
CBX3P4-202ENST00000540428 OR2W3Q7Z3T1 314 aa9.51□□□□□ -0.89
CBX3P4-202ENST00000540428 C5orf56Q8N8D9 126 aa9.51□□□□□ -0.89
CBX3P4-202ENST00000540428 ZNF565Q8N9K5 539 aa9.51□□□□□ -0.89
CBX3P4-202ENST00000540428 OR51T1Q8NGJ9 327 aa9.51□□□□□ -0.89
CBX3P4-202ENST00000540428 OR5D18Q8NGL1 313 aa9.51□□□□□ -0.89
CBX3P4-202ENST00000540428 OR13C9Q8NGT0 318 aa9.51□□□□□ -0.89
CBX3P4-202ENST00000540428 ZNF649Q9BS31 505 aa9.51□□□□□ -0.89
CBX3P4-202ENST00000540428 ZCCHC4Q9H5U6 513 aa9.51□□□□□ -0.89
CBX3P4-202ENST00000540428 LINC00574Q9H8X3 128 aa9.51□□□□□ -0.89
CBX3P4-202ENST00000540428 AP4S1Q9Y587 144 aa9.51□□□□□ -0.89
CBX3P4-202ENST00000540428 A0A1W2PPI3 338 aa9.5□□□□□ -0.89
CBX3P4-202ENST00000540428 J3QRE1 110 aa9.5□□□□□ -0.89
CBX3P4-202ENST00000540428 IL1AP01583 271 aa9.5□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 58.2 ms