RNA–Protein interactions for RNA: ENST00000532339.1

CD44-235, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 589 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-235ENST00000532339 KLK5Q9Y337 293 aaPredicted RBP2.57□□□□□ -2
CD44-235ENST00000532339 TMED5Q9Y3A6 229 aa2.57□□□□□ -2
CD44-235ENST00000532339 TSSC4Q9Y5U2 329 aaPredicted RBP2.57□□□□□ -2
CD44-235ENST00000532339 A0A075B6Q4 140 aa2.56□□□□□ -2
CD44-235ENST00000532339 IGHV1-69DA0A0B4J2H0 117 aa2.56□□□□□ -2
CD44-235ENST00000532339 A0A0G2JLM5 398 aa2.56□□□□□ -2
CD44-235ENST00000532339 KIR2DL5BA0A0G2JN68 375 aa2.56□□□□□ -2
CD44-235ENST00000532339 KIR2DL5BA0A0G2JPC4 375 aa2.56□□□□□ -2
CD44-235ENST00000532339 CENPVL3A0A0U1RRI6 287 aa2.56□□□□□ -2
CD44-235ENST00000532339 KIR2DS1A0A191URI9 304 aa2.56□□□□□ -2
CD44-235ENST00000532339 CCL22O00626 93 aa2.56□□□□□ -2
CD44-235ENST00000532339 HDAC3O15379 428 aa2.56□□□□□ -2
CD44-235ENST00000532339 IGHV1-69P01742 117 aa2.56□□□□□ -2
CD44-235ENST00000532339 CLPSP04118 112 aa2.56□□□□□ -2
CD44-235ENST00000532339 FGF4P08620 206 aa2.56□□□□□ -2
CD44-235ENST00000532339 FBP1P09467 338 aa2.56□□□□□ -2
CD44-235ENST00000532339 TBPP20226 339 aa2.56□□□□□ -2
CD44-235ENST00000532339 STX17P56962 302 aa2.56□□□□□ -2
CD44-235ENST00000532339 CARD18P57730 90 aa2.56□□□□□ -2
CD44-235ENST00000532339 FGF12P61328 243 aa2.56□□□□□ -2
CD44-235ENST00000532339 SELENOTP62341 195 aa2.56□□□□□ -2
CD44-235ENST00000532339 TGFBR3Q03167 851 aa2.56□□□□□ -2
CD44-235ENST00000532339 LRRC63Q05C16 580 aa2.56□□□□□ -2
CD44-235ENST00000532339 SASS6Q6UVJ0 657 aa2.56□□□□□ -2
CD44-235ENST00000532339 C6orf89Q6UWU4 347 aa2.56□□□□□ -2
CD44-235ENST00000532339 Q6ZN92 141 aa2.56□□□□□ -2
CD44-235ENST00000532339 DGAT2L6Q6ZPD8 337 aa2.56□□□□□ -2
CD44-235ENST00000532339 RNF165Q6ZSG1 346 aa2.56□□□□□ -2
CD44-235ENST00000532339 PHF13Q86YI8 300 aaPredicted RBP2.56□□□□□ -2
CD44-235ENST00000532339 KIR2DL5AQ8N109 375 aa2.56□□□□□ -2
CD44-235ENST00000532339 CEP112Q8N8E3 955 aa2.56□□□□□ -2
CD44-235ENST00000532339 FNDC5Q8NAU1 212 aa2.56□□□□□ -2
CD44-235ENST00000532339 OR2M3Q8NG83 312 aa2.56□□□□□ -2
CD44-235ENST00000532339 KIR2DL5BQ8NHK3 375 aa2.56□□□□□ -2
CD44-235ENST00000532339 PLPPR1Q8TBJ4 325 aa2.56□□□□□ -2
CD44-235ENST00000532339 LKAAEAR1Q8TD35 194 aa2.56□□□□□ -2
CD44-235ENST00000532339 ANKRD49Q8WVL7 239 aa2.56□□□□□ -2
CD44-235ENST00000532339 PPWD1Q96BP3 646 aaKnown RBP2.56□□□□□ -2
CD44-235ENST00000532339 NEURL3Q96EH8 262 aa2.56□□□□□ -2
CD44-235ENST00000532339 TECTBQ96PL2 329 aa2.56□□□□□ -2
CD44-235ENST00000532339 OR8B4Q96RC9 309 aa2.56□□□□□ -2
CD44-235ENST00000532339 PANX1Q96RD7 426 aa2.56□□□□□ -2
CD44-235ENST00000532339 PELOQ9BRX2 385 aaKnown RBP2.56□□□□□ -2
CD44-235ENST00000532339 NAT9Q9BTE0 207 aa2.56□□□□□ -2
CD44-235ENST00000532339 MRPL37Q9BZE1 423 aaKnown RBP2.56□□□□□ -2
CD44-235ENST00000532339 OR51J1Q9H342 316 aa2.56□□□□□ -2
CD44-235ENST00000532339 DSN1Q9H410 356 aa2.56□□□□□ -2
CD44-235ENST00000532339 EXD2Q9NVH0 621 aa2.56□□□□□ -2
CD44-235ENST00000532339 ZNRD1Q9P1U0 126 aa2.56□□□□□ -2
CD44-235ENST00000532339 LRP1Q07954 4544 aaKnown RBP2.55□□□□□ -2
CD44-235ENST00000532339 A0A0J9YW62 118 aa2.55□□□□□ -2
CD44-235ENST00000532339 A0A0J9YXY3 114 aa2.55□□□□□ -2
CD44-235ENST00000532339 SERTM2A0A1B0GWG4 89 aa2.55□□□□□ -2
CD44-235ENST00000532339 TCRBV4S1A1TA0A5B7 111 aa2.55□□□□□ -2
CD44-235ENST00000532339 PSMB11A5LHX3 300 aa2.55□□□□□ -2
CD44-235ENST00000532339 OR6C70A6NIJ9 312 aa2.55□□□□□ -2
CD44-235ENST00000532339 IQCF5A8MTL0 148 aa2.55□□□□□ -2
CD44-235ENST00000532339 C4orf51C9J302 202 aa2.55□□□□□ -2
CD44-235ENST00000532339 GOSR2O14653 212 aa2.55□□□□□ -2
CD44-235ENST00000532339 ACOX3O15254 700 aa2.55□□□□□ -2
CD44-235ENST00000532339 OR1I1O60431 355 aa2.55□□□□□ -2
CD44-235ENST00000532339 PSIP1O75475 530 aaKnown RBP2.55□□□□□ -2
CD44-235ENST00000532339 TSPAN13O95857 204 aa2.55□□□□□ -2
CD44-235ENST00000532339 CATP04040 527 aaKnown RBP2.55□□□□□ -2
CD44-235ENST00000532339 SERPINA6P08185 405 aa2.55□□□□□ -2
CD44-235ENST00000532339 CECR9P0C854 216 aa2.55□□□□□ -2
CD44-235ENST00000532339 HIST1H1TP22492 207 aaPredicted RBP2.55□□□□□ -2
CD44-235ENST00000532339 DLX1P56177 255 aa2.55□□□□□ -2
CD44-235ENST00000532339 STXBP1P61764 594 aaKnown RBP2.55□□□□□ -2
CD44-235ENST00000532339 TBPL1P62380 186 aa2.55□□□□□ -2
CD44-235ENST00000532339 CCL8P80075 99 aa2.55□□□□□ -2
CD44-235ENST00000532339 ACVR1Q04771 509 aa2.55□□□□□ -2
CD44-235ENST00000532339 PLCXD2Q0VAA5 305 aa2.55□□□□□ -2
CD44-235ENST00000532339 CDH17Q12864 832 aa2.55□□□□□ -2
CD44-235ENST00000532339 MAD2L1BPQ15013 274 aaPredicted RBP2.55□□□□□ -2
CD44-235ENST00000532339 ATP6AP1Q15904 470 aa2.55□□□□□ -2
CD44-235ENST00000532339 ALKBH6Q3KRA9 238 aa2.55□□□□□ -2
CD44-235ENST00000532339 TMEM155Q4W5P6 130 aa2.55□□□□□ -2
CD44-235ENST00000532339 SPANXN2Q5MJ10 180 aa2.55□□□□□ -2
CD44-235ENST00000532339 Q5VSD8 79 aa2.55□□□□□ -2
CD44-235ENST00000532339 IL34Q6ZMJ4 242 aa2.55□□□□□ -2
CD44-235ENST00000532339 CCDC121Q6ZUS5 278 aa2.55□□□□□ -2
CD44-235ENST00000532339 ZNF571Q7Z3V5 609 aaPredicted RBP2.55□□□□□ -2
CD44-235ENST00000532339 PDZD9Q8IXQ8 264 aa2.55□□□□□ -2
CD44-235ENST00000532339 ST13P4Q8IZP2 240 aaPredicted RBP2.55□□□□□ -2
CD44-235ENST00000532339 Q8N2B8 174 aa2.55□□□□□ -2
CD44-235ENST00000532339 MS4A15Q8N5U1 240 aa2.55□□□□□ -2
CD44-235ENST00000532339 OR7G2Q8NG99 324 aa2.55□□□□□ -2
CD44-235ENST00000532339 OR51D1Q8NGF3 324 aa2.55□□□□□ -2
CD44-235ENST00000532339 OR9G1Q8NH87 305 aa2.55□□□□□ -2
CD44-235ENST00000532339 RNF138Q8WVD3 245 aa2.55□□□□□ -2
CD44-235ENST00000532339 FRZBQ92765 325 aa2.55□□□□□ -2
CD44-235ENST00000532339 APH1AQ96BI3 265 aa2.55□□□□□ -2
CD44-235ENST00000532339 RPUSD4Q96CM3 377 aaKnown RBP2.55□□□□□ -2
CD44-235ENST00000532339 C16orf74Q96GX8 76 aa2.55□□□□□ -2
CD44-235ENST00000532339 SORT1Q99523 831 aa2.55□□□□□ -2
CD44-235ENST00000532339 CHP1Q99653 195 aa2.55□□□□□ -2
CD44-235ENST00000532339 NABP2Q9BQ15 211 aa2.55□□□□□ -2
CD44-235ENST00000532339 CENPKQ9BS16 269 aa2.55□□□□□ -2
CD44-235ENST00000532339 MFFQ9GZY8 342 aa2.55□□□□□ -2
Retrieved 100 of 20,778 RNA–protein pairs in 49.9 ms