RNA–Protein interactions for RNA: ENST00000531924.1

VPS28-215, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 695 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-215ENST00000531924 MRAPQ8TCY5 172 aa11.82□□□□□ -0.52
VPS28-215ENST00000531924 CORO2AQ92828 525 aa11.82□□□□□ -0.52
VPS28-215ENST00000531924 CPNE2Q96FN4 548 aaPredicted RBP11.82□□□□□ -0.52
VPS28-215ENST00000531924 HRASLS5Q96KN8 279 aa11.82□□□□□ -0.52
VPS28-215ENST00000531924 SLC25A33Q9BSK2 321 aa11.82□□□□□ -0.52
VPS28-215ENST00000531924 LIN7BQ9HAP6 207 aa11.82□□□□□ -0.52
VPS28-215ENST00000531924 NECAP2Q9NVZ3 263 aa11.82□□□□□ -0.52
VPS28-215ENST00000531924 IGKV1-12A0A0C4DH73 117 aa11.81□□□□□ -0.52
VPS28-215ENST00000531924 TCRBV4S1A1TA0A5B7 111 aa11.81□□□□□ -0.52
VPS28-215ENST00000531924 EI24O14681 340 aa11.81□□□□□ -0.52
VPS28-215ENST00000531924 MAGEB3O15480 346 aa11.81□□□□□ -0.52
VPS28-215ENST00000531924 IGKV1D-12P01611 117 aa11.81□□□□□ -0.52
VPS28-215ENST00000531924 ALPLP05186 524 aa11.81□□□□□ -0.52
VPS28-215ENST00000531924 DBTP11182 482 aaKnown RBP11.81□□□□□ -0.52
VPS28-215ENST00000531924 NFYBP25208 207 aa11.81□□□□□ -0.52
VPS28-215ENST00000531924 ABCA11PQ4W5N1 156 aa11.81□□□□□ -0.52
VPS28-215ENST00000531924 KHDC1LQ5JSQ8 128 aa11.81□□□□□ -0.52
VPS28-215ENST00000531924 C9orf152Q5JTZ5 239 aa11.81□□□□□ -0.52
VPS28-215ENST00000531924 LHFPL3Q86UP9 236 aa11.81□□□□□ -0.52
VPS28-215ENST00000531924 SERPINA12Q8IW75 414 aa11.81□□□□□ -0.52
VPS28-215ENST00000531924 OR51A4Q8NGJ6 313 aa11.81□□□□□ -0.52
VPS28-215ENST00000531924 OR10AC1Q8NH08 325 aa11.81□□□□□ -0.52
VPS28-215ENST00000531924 TSEN15Q8WW01 171 aaKnown RBP11.81□□□□□ -0.52
VPS28-215ENST00000531924 RNF166Q96A37 237 aaPredicted RBP11.81□□□□□ -0.52
VPS28-215ENST00000531924 PELI1Q96FA3 418 aa11.81□□□□□ -0.52
VPS28-215ENST00000531924 Q96MT0 163 aa11.81□□□□□ -0.52
VPS28-215ENST00000531924 ALG8Q9BVK2 526 aa11.81□□□□□ -0.52
VPS28-215ENST00000531924 COMMD4Q9H0A8 199 aa11.81□□□□□ -0.52
VPS28-215ENST00000531924 FAM53CQ9NYF3 392 aa11.81□□□□□ -0.52
VPS28-215ENST00000531924 OR6C3Q9NZP0 311 aa11.81□□□□□ -0.52
VPS28-215ENST00000531924 GMPPBQ9Y5P6 360 aa11.81□□□□□ -0.52
VPS28-215ENST00000531924 OR4C45A6NMZ5 311 aa11.8□□□□□ -0.52
VPS28-215ENST00000531924 J3QRE1 110 aa11.8□□□□□ -0.52
VPS28-215ENST00000531924 FADS2O95864 444 aaKnown RBP11.8□□□□□ -0.52
VPS28-215ENST00000531924 PF4P02776 101 aa11.8□□□□□ -0.52
VPS28-215ENST00000531924 LPLP06858 475 aa11.8□□□□□ -0.52
VPS28-215ENST00000531924 FAM106CPP0CH98 169 aa11.8□□□□□ -0.52
VPS28-215ENST00000531924 LMO1P25800 156 aa11.8□□□□□ -0.52
VPS28-215ENST00000531924 OR3A4PP47883 348 aa11.8□□□□□ -0.52
VPS28-215ENST00000531924 ALDH3A2P51648 485 aa11.8□□□□□ -0.52
VPS28-215ENST00000531924 LOXL3P58215 753 aa11.8□□□□□ -0.52
VPS28-215ENST00000531924 ATXN7L3Q14CW9 347 aaPredicted RBP11.8□□□□□ -0.52
VPS28-215ENST00000531924 KISS1Q15726 138 aa11.8□□□□□ -0.52
VPS28-215ENST00000531924 BAIAP2L2Q6UXY1 529 aa11.8□□□□□ -0.52
VPS28-215ENST00000531924 Q6ZPA2 131 aa11.8□□□□□ -0.52
VPS28-215ENST00000531924 CCDC121Q6ZUS5 278 aa11.8□□□□□ -0.52
VPS28-215ENST00000531924 C10orf67Q8IYJ2 551 aa11.8□□□□□ -0.52
VPS28-215ENST00000531924 ZNF565Q8N9K5 539 aa11.8□□□□□ -0.52
VPS28-215ENST00000531924 OR4X2Q8NGF9 303 aa11.8□□□□□ -0.52
VPS28-215ENST00000531924 LGALS12Q96DT0 336 aa11.8□□□□□ -0.52
VPS28-215ENST00000531924 NR1H4Q96RI1 486 aaPredicted RBP11.8□□□□□ -0.52
VPS28-215ENST00000531924 GPER1Q99527 375 aa11.8□□□□□ -0.52
VPS28-215ENST00000531924 OCSTAMPQ9BR26 566 aa11.8□□□□□ -0.52
VPS28-215ENST00000531924 ZNF286AQ9HBT8 521 aa11.8□□□□□ -0.52
VPS28-215ENST00000531924 DHDHQ9UQ10 334 aa11.8□□□□□ -0.52
VPS28-215ENST00000531924 EXOGQ9Y2C4 368 aaKnown RBP11.8□□□□□ -0.52
VPS28-215ENST00000531924 TMEM212A6NML5 194 aa11.79□□□□□ -0.52
VPS28-215ENST00000531924 ZNF729A6NN14 1252 aaPredicted RBP11.79□□□□□ -0.52
VPS28-215ENST00000531924 BUB1B-PAK6H3BSN5 160 aa11.79□□□□□ -0.52
VPS28-215ENST00000531924 M0QZK8 103 aa11.79□□□□□ -0.52
VPS28-215ENST00000531924 SLC33A1O00400 549 aaPredicted RBP11.79□□□□□ -0.52
VPS28-215ENST00000531924 HSPB6O14558 160 aa11.79□□□□□ -0.52
VPS28-215ENST00000531924 SULT1B1O43704 296 aa11.79□□□□□ -0.52
VPS28-215ENST00000531924 MPZL2O60487 215 aa11.79□□□□□ -0.52
VPS28-215ENST00000531924 OR2F2O95006 317 aa11.79□□□□□ -0.52
VPS28-215ENST00000531924 CLIC3O95833 236 aa11.79□□□□□ -0.52
VPS28-215ENST00000531924 CSN2P05814 226 aa11.79□□□□□ -0.52
VPS28-215ENST00000531924 CCDC159P0C7I6 412 aa11.79□□□□□ -0.52
VPS28-215ENST00000531924 GLP1RP43220 463 aa11.79□□□□□ -0.52
VPS28-215ENST00000531924 MTNR1BP49286 362 aa11.79□□□□□ -0.52
VPS28-215ENST00000531924 GBX2P52951 348 aaPredicted RBP11.79□□□□□ -0.52
VPS28-215ENST00000531924 CD83Q01151 205 aa11.79□□□□□ -0.52
VPS28-215ENST00000531924 MRPL28Q13084 256 aaKnown RBP11.79□□□□□ -0.52
VPS28-215ENST00000531924 GALEQ14376 348 aa11.79□□□□□ -0.52
VPS28-215ENST00000531924 PAN3Q58A45 887 aaKnown RBP11.79□□□□□ -0.52
VPS28-215ENST00000531924 TPTE2P1Q5T6R2 138 aa11.79□□□□□ -0.52
VPS28-215ENST00000531924 ZFP1Q6P2D0 407 aa11.79□□□□□ -0.52
VPS28-215ENST00000531924 SATL1Q86VE3 508 aa11.79□□□□□ -0.52
VPS28-215ENST00000531924 SYS1Q8N2H4 156 aa11.79□□□□□ -0.52
VPS28-215ENST00000531924 CBR4Q8N4T8 237 aa11.79□□□□□ -0.52
VPS28-215ENST00000531924 OR5AK2Q8NH90 309 aa11.79□□□□□ -0.52
VPS28-215ENST00000531924 WIPF2Q8TF74 440 aaPredicted RBP11.79□□□□□ -0.52
VPS28-215ENST00000531924 RPEQ96AT9 228 aa11.79□□□□□ -0.52
VPS28-215ENST00000531924 RBM14Q96PK6 669 aaKnown RBP11.79□□□□□ -0.52
VPS28-215ENST00000531924 BARHL1Q9BZE3 327 aa11.79□□□□□ -0.52
VPS28-215ENST00000531924 PCDHB16Q9NRJ7 776 aa11.79□□□□□ -0.52
VPS28-215ENST00000531924 MYRFQ9Y2G1 1151 aa11.79□□□□□ -0.52
VPS28-215ENST00000531924 AMMECR1Q9Y4X0 333 aaPredicted RBP11.79□□□□□ -0.52
VPS28-215ENST00000531924 TSSC4Q9Y5U2 329 aaPredicted RBP11.79□□□□□ -0.52
VPS28-215ENST00000531924 MEIKINA0A087WXM9 373 aa11.78□□□□□ -0.52
VPS28-215ENST00000531924 KBTBD11-OT1A0A1B0GTJ5 212 aa11.78□□□□□ -0.52
VPS28-215ENST00000531924 ADARB2-AS1A8MUL3 147 aa11.78□□□□□ -0.52
VPS28-215ENST00000531924 OOSP1A8MZH6 123 aa11.78□□□□□ -0.52
VPS28-215ENST00000531924 H0YJX3 145 aa11.78□□□□□ -0.52
VPS28-215ENST00000531924 IGLV1-47P01700 117 aa11.78□□□□□ -0.52
VPS28-215ENST00000531924 CD34P28906 385 aa11.78□□□□□ -0.52
VPS28-215ENST00000531924 C21orf33P30042 268 aaPredicted RBP11.78□□□□□ -0.52
VPS28-215ENST00000531924 HLA-DRB5Q30154 266 aa11.78□□□□□ -0.52
VPS28-215ENST00000531924 ZNF691Q5VV52 312 aa11.78□□□□□ -0.52
VPS28-215ENST00000531924 LPCAT4Q643R3 524 aa11.78□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms