RNA–Protein interactions for RNA: ENST00000529182.5

VPS28-210, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 2 BASIC

Gene VPS28, Length 1,010 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-210ENST00000529182 MGST3O14880 152 aa10.95□□□□□ -0.66
VPS28-210ENST00000529182 GEMIN2O14893 280 aaKnown RBP10.95□□□□□ -0.66
VPS28-210ENST00000529182 IGHV1-69P01742 117 aa10.95□□□□□ -0.66
VPS28-210ENST00000529182 PSMA1P25786 263 aaKnown RBP10.95□□□□□ -0.66
VPS28-210ENST00000529182 RBM11P57052 281 aaKnown RBP10.95□□□□□ -0.66
VPS28-210ENST00000529182 AESQ08117 197 aa10.95□□□□□ -0.66
VPS28-210ENST00000529182 BLMHQ13867 455 aa10.95□□□□□ -0.66
VPS28-210ENST00000529182 IL13RA2Q14627 380 aa10.95□□□□□ -0.66
VPS28-210ENST00000529182 ATXN7L3Q14CW9 347 aaPredicted RBP10.95□□□□□ -0.66
VPS28-210ENST00000529182 TUSC1Q2TAM9 212 aa10.95□□□□□ -0.66
VPS28-210ENST00000529182 KCTD21Q4G0X4 260 aa10.95□□□□□ -0.66
VPS28-210ENST00000529182 C9orf139Q6ZV77 190 aa10.95□□□□□ -0.66
VPS28-210ENST00000529182 CDH26Q8IXH8 852 aa10.95□□□□□ -0.66
VPS28-210ENST00000529182 PPP1R35Q8TAP8 253 aa10.95□□□□□ -0.66
VPS28-210ENST00000529182 C1orf147Q96MC9 270 aaPredicted RBP10.95□□□□□ -0.66
VPS28-210ENST00000529182 GFI1Q99684 422 aa10.95□□□□□ -0.66
VPS28-210ENST00000529182 SUCNR1Q9BXA5 334 aa10.95□□□□□ -0.66
VPS28-210ENST00000529182 BANF2Q9H503 90 aa10.95□□□□□ -0.66
VPS28-210ENST00000529182 METTL8Q9H825 291 aaKnown RBP10.95□□□□□ -0.66
VPS28-210ENST00000529182 ESM1Q9NQ30 184 aa10.95□□□□□ -0.66
VPS28-210ENST00000529182 NDUFB11Q9NX14 153 aa10.95□□□□□ -0.66
VPS28-210ENST00000529182 MEGF11A6BM72 1044 aa10.94□□□□□ -0.66
VPS28-210ENST00000529182 PRTN3P24158 256 aa10.94□□□□□ -0.66
VPS28-210ENST00000529182 CALRP27797 417 aaKnown RBP10.94□□□□□ -0.66
VPS28-210ENST00000529182 GLIPR1P48060 266 aa10.94□□□□□ -0.66
VPS28-210ENST00000529182 DLX6P56179 175 aa10.94□□□□□ -0.66
VPS28-210ENST00000529182 P2RX3P56373 397 aa10.94□□□□□ -0.66
VPS28-210ENST00000529182 HILS1P60008 231 aa10.94□□□□□ -0.66
VPS28-210ENST00000529182 TAF9Q16594 264 aa10.94□□□□□ -0.66
VPS28-210ENST00000529182 DEFB112Q30KQ8 113 aa10.94□□□□□ -0.66
VPS28-210ENST00000529182 KRTAP24-1Q3LI83 254 aa10.94□□□□□ -0.66
VPS28-210ENST00000529182 PAN3Q58A45 887 aaKnown RBP10.94□□□□□ -0.66
VPS28-210ENST00000529182 GLT8D1Q68CQ7 371 aa10.94□□□□□ -0.66
VPS28-210ENST00000529182 HCP5Q6MZN7 132 aa10.94□□□□□ -0.66
VPS28-210ENST00000529182 ZNF782Q6ZMW2 699 aaPredicted RBP10.94□□□□□ -0.66
VPS28-210ENST00000529182 C1orf122Q6ZSJ8 110 aa10.94□□□□□ -0.66
VPS28-210ENST00000529182 PIP4P2Q8N4L2 257 aa10.94□□□□□ -0.66
VPS28-210ENST00000529182 CHST4Q8NCG5 386 aa10.94□□□□□ -0.66
VPS28-210ENST00000529182 TMEM104Q8NE00 496 aa10.94□□□□□ -0.66
VPS28-210ENST00000529182 TBC1D15Q8TC07 691 aa10.94□□□□□ -0.66
VPS28-210ENST00000529182 COQ2Q96H96 371 aa10.94□□□□□ -0.66
VPS28-210ENST00000529182 DUX5Q96PT3 197 aa10.94□□□□□ -0.66
VPS28-210ENST00000529182 UQCC2Q9BRT2 126 aa10.94□□□□□ -0.66
VPS28-210ENST00000529182 SLITRK2Q9H156 845 aa10.94□□□□□ -0.66
VPS28-210ENST00000529182 KCNK15Q9H427 330 aa10.94□□□□□ -0.66
VPS28-210ENST00000529182 AK6Q9Y3D8 172 aaKnown RBP10.94□□□□□ -0.66
VPS28-210ENST00000529182 A0A1W2PPH5 198 aa10.93□□□□□ -0.66
VPS28-210ENST00000529182 hADV38S2A0JD32 116 aa10.93□□□□□ -0.66
VPS28-210ENST00000529182 CCRL2O00421 344 aa10.93□□□□□ -0.66
VPS28-210ENST00000529182 ZNF780AO75290 641 aaPredicted RBP10.93□□□□□ -0.66
VPS28-210ENST00000529182 CRTAPO75718 401 aaPredicted RBP10.93□□□□□ -0.66
VPS28-210ENST00000529182 ARL6IP5O75915 188 aa10.93□□□□□ -0.66
VPS28-210ENST00000529182 OR7C1O76099 320 aaPredicted RBP10.93□□□□□ -0.66
VPS28-210ENST00000529182 ZNF728P0DKX0 622 aa10.93□□□□□ -0.66
VPS28-210ENST00000529182 GTF2F2P13984 249 aa10.93□□□□□ -0.66
VPS28-210ENST00000529182 ERP29P30040 261 aaKnown RBP10.93□□□□□ -0.66
VPS28-210ENST00000529182 MEF2CQ06413 473 aaPredicted RBP10.93□□□□□ -0.66
VPS28-210ENST00000529182 NEDD8Q15843 81 aa10.93□□□□□ -0.66
VPS28-210ENST00000529182 NHLRC3Q5JS37 347 aa10.93□□□□□ -0.66
VPS28-210ENST00000529182 KRBOX4Q5JUW0 171 aa10.93□□□□□ -0.66
VPS28-210ENST00000529182 OR10K2Q6IF99 312 aa10.93□□□□□ -0.66
VPS28-210ENST00000529182 BRICD5Q6PL45 260 aa10.93□□□□□ -0.66
VPS28-210ENST00000529182 USP43Q70EL4 1123 aa10.93□□□□□ -0.66
VPS28-210ENST00000529182 TRAPPC6BQ86SZ2 158 aa10.93□□□□□ -0.66
VPS28-210ENST00000529182 ZDHHC22Q8N966 263 aa10.93□□□□□ -0.66
VPS28-210ENST00000529182 SUMF2Q8NBJ7 301 aa10.93□□□□□ -0.66
VPS28-210ENST00000529182 FCGR1BQ92637 280 aa10.93□□□□□ -0.66
VPS28-210ENST00000529182 FAM46BQ96A09 425 aa10.93□□□□□ -0.66
VPS28-210ENST00000529182 CYYR1Q96J86 154 aa10.93□□□□□ -0.66
VPS28-210ENST00000529182 LINC00312Q9Y6C7 94 aa10.93□□□□□ -0.66
VPS28-210ENST00000529182 A0A0A6YYJ9 748 aa10.92□□□□□ -0.66
VPS28-210ENST00000529182 A0A0U1RQK1 487 aa10.92□□□□□ -0.66
VPS28-210ENST00000529182 SHISA3A0PJX4 238 aa10.92□□□□□ -0.66
VPS28-210ENST00000529182 RNF212BA8MTL3 300 aa10.92□□□□□ -0.66
VPS28-210ENST00000529182 C17orf98A8MV24 154 aa10.92□□□□□ -0.66
VPS28-210ENST00000529182 CSN2P05814 226 aa10.92□□□□□ -0.66
VPS28-210ENST00000529182 MGMTP16455 207 aa10.92□□□□□ -0.66
VPS28-210ENST00000529182 COX7A1P24310 79 aa10.92□□□□□ -0.66
VPS28-210ENST00000529182 BPIFB3P59826 476 aa10.92□□□□□ -0.66
VPS28-210ENST00000529182 BAMBIQ13145 260 aa10.92□□□□□ -0.66
VPS28-210ENST00000529182 GPR176Q14439 515 aa10.92□□□□□ -0.66
VPS28-210ENST00000529182 C1orf100Q5SVJ3 147 aa10.92□□□□□ -0.66
VPS28-210ENST00000529182 ATAD3CQ5T2N8 411 aa10.92□□□□□ -0.66
VPS28-210ENST00000529182 C22orf42Q6IC83 251 aa10.92□□□□□ -0.66
VPS28-210ENST00000529182 CD200R1LQ6Q8B3 271 aa10.92□□□□□ -0.66
VPS28-210ENST00000529182 RBMS3Q6XE24 437 aaKnown RBP10.92□□□□□ -0.66
VPS28-210ENST00000529182 PLPPR1Q8TBJ4 325 aa10.92□□□□□ -0.66
VPS28-210ENST00000529182 FOXRED1Q96CU9 486 aaPredicted RBP10.92□□□□□ -0.66
VPS28-210ENST00000529182 ZNF714Q96N38 554 aa10.92□□□□□ -0.66
VPS28-210ENST00000529182 DPCDQ9BVM2 203 aaPredicted RBP10.92□□□□□ -0.66
VPS28-210ENST00000529182 SELENOIQ9C0D9 397 aa10.92□□□□□ -0.66
VPS28-210ENST00000529182 UNKLQ9H9P5 680 aaKnown RBP10.92□□□□□ -0.66
VPS28-210ENST00000529182 PCDHB16Q9NRJ7 776 aa10.92□□□□□ -0.66
VPS28-210ENST00000529182 TRDV1A0A1B0GX56 115 aa10.91□□□□□ -0.66
VPS28-210ENST00000529182 ODAMA1E959 279 aa10.91□□□□□ -0.66
VPS28-210ENST00000529182 DNAJC9-AS1A6NH13 148 aa10.91□□□□□ -0.66
VPS28-210ENST00000529182 NPFFO15130 113 aa10.91□□□□□ -0.66
VPS28-210ENST00000529182 SLC22A1O15245 554 aa10.91□□□□□ -0.66
VPS28-210ENST00000529182 MMP23AO75900 390 aa10.91□□□□□ -0.66
VPS28-210ENST00000529182 MPIG6BO95866 241 aa10.91□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms