RNA–Protein interactions for RNA: ENST00000528086.5

CD44-227, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 580 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-227ENST00000528086 SLC35E4Q6ICL7 350 aa8.6□□□□□ -1.03
CD44-227ENST00000528086 Q6ZS46 218 aa8.6□□□□□ -1.03
CD44-227ENST00000528086 AHSA2Q719I0 299 aa8.6□□□□□ -1.03
CD44-227ENST00000528086 GDPD3Q7L5L3 318 aa8.6□□□□□ -1.03
CD44-227ENST00000528086 NANOGP1Q8N7R0 232 aa8.6□□□□□ -1.03
CD44-227ENST00000528086 OR4F5Q8NH21 305 aa8.6□□□□□ -1.03
CD44-227ENST00000528086 PLPPR1Q8TBJ4 325 aa8.6□□□□□ -1.03
CD44-227ENST00000528086 TSEN15Q8WW01 171 aaKnown RBP8.6□□□□□ -1.03
CD44-227ENST00000528086 TMEM106AQ96A25 262 aa8.6□□□□□ -1.03
CD44-227ENST00000528086 MRPL48Q96GC5 212 aaKnown RBP8.6□□□□□ -1.03
CD44-227ENST00000528086 DPAGT1Q9H3H5 408 aa8.6□□□□□ -1.03
CD44-227ENST00000528086 HEXA-AS1Q9H8Q6 139 aa8.6□□□□□ -1.03
CD44-227ENST00000528086 CNOT2Q9NZN8 540 aaKnown RBP8.6□□□□□ -1.03
CD44-227ENST00000528086 IGHV2-26A0A0B4J1V2 119 aa8.59□□□□□ -1.03
CD44-227ENST00000528086 PNMA8CA0A1B0GUJ8 204 aa8.59□□□□□ -1.03
CD44-227ENST00000528086 A0A1W2PPK0 400 aa8.59□□□□□ -1.03
CD44-227ENST00000528086 ODAMA1E959 279 aa8.59□□□□□ -1.03
CD44-227ENST00000528086 VGLL3A8MV65 326 aa8.59□□□□□ -1.03
CD44-227ENST00000528086 SH2D1BO14796 132 aa8.59□□□□□ -1.03
CD44-227ENST00000528086 IGLV1-47P01700 117 aa8.59□□□□□ -1.03
CD44-227ENST00000528086 ALDOBP05062 364 aa8.59□□□□□ -1.03
CD44-227ENST00000528086 RPSAP08865 295 aaKnown RBP8.59□□□□□ -1.03
CD44-227ENST00000528086 RAB3AP20336 220 aa8.59□□□□□ -1.03
CD44-227ENST00000528086 PTGFRP43088 359 aa8.59□□□□□ -1.03
CD44-227ENST00000528086 MTNR1BP49286 362 aa8.59□□□□□ -1.03
CD44-227ENST00000528086 SLC34A1Q06495 639 aa8.59□□□□□ -1.03
CD44-227ENST00000528086 SCN1BQ07699 218 aa8.59□□□□□ -1.03
CD44-227ENST00000528086 IRF3Q14653 427 aa8.59□□□□□ -1.03
CD44-227ENST00000528086 AANATQ16613 207 aa8.59□□□□□ -1.03
CD44-227ENST00000528086 LRRC75BQ2VPJ9 315 aa8.59□□□□□ -1.03
CD44-227ENST00000528086 FAM53AQ6NSI3 398 aaPredicted RBP8.59□□□□□ -1.03
CD44-227ENST00000528086 TMPRSS11AQ6ZMR5 421 aa8.59□□□□□ -1.03
CD44-227ENST00000528086 C8orf59Q8N0T1 100 aaPredicted RBP8.59□□□□□ -1.03
CD44-227ENST00000528086 SETD9Q8NE22 299 aa8.59□□□□□ -1.03
CD44-227ENST00000528086 BPIFB6Q8NFQ5 453 aa8.59□□□□□ -1.03
CD44-227ENST00000528086 OR4P4Q8NGL7 312 aa8.59□□□□□ -1.03
CD44-227ENST00000528086 TNFAIP8L1Q8WVP5 186 aa8.59□□□□□ -1.03
CD44-227ENST00000528086 OR14A2Q96R54 314 aa8.59□□□□□ -1.03
CD44-227ENST00000528086 OR5M11Q96RB7 305 aa8.59□□□□□ -1.03
CD44-227ENST00000528086 ZNF696Q9H7X3 374 aa8.59□□□□□ -1.03
CD44-227ENST00000528086 DCLRE1BQ9H816 532 aa8.59□□□□□ -1.03
CD44-227ENST00000528086 EXOSC4Q9NPD3 245 aaKnown RBP8.59□□□□□ -1.03
CD44-227ENST00000528086 RNF114Q9Y508 228 aa8.59□□□□□ -1.03
CD44-227ENST00000528086 PRKDCP78527 4128 aaKnown RBP8.59□□□□□ -1.03
CD44-227ENST00000528086 NOTCH1P46531 2555 aa8.58□□□□□ -1.04
CD44-227ENST00000528086 TRAV39A0A0B4J263 110 aa8.58□□□□□ -1.04
CD44-227ENST00000528086 hADV38S2A0JD32 116 aa8.58□□□□□ -1.04
CD44-227ENST00000528086 FAM172BPA6NC97 362 aa8.58□□□□□ -1.04
CD44-227ENST00000528086 A6NDX4 124 aa8.58□□□□□ -1.04
CD44-227ENST00000528086 EFCAB10A6NFE3 127 aa8.58□□□□□ -1.04
CD44-227ENST00000528086 LY6LH3BQJ8 138 aa8.58□□□□□ -1.04
CD44-227ENST00000528086 ARG1P05089 322 aa8.58□□□□□ -1.04
CD44-227ENST00000528086 CDK1P06493 297 aa8.58□□□□□ -1.04
CD44-227ENST00000528086 OCM2P0CE71 109 aa8.58□□□□□ -1.04
CD44-227ENST00000528086 CD34P28906 385 aa8.58□□□□□ -1.04
CD44-227ENST00000528086 EFNB2P52799 333 aa8.58□□□□□ -1.04
CD44-227ENST00000528086 ATXN7L3Q14CW9 347 aaPredicted RBP8.58□□□□□ -1.04
CD44-227ENST00000528086 Q499Y3 187 aa8.58□□□□□ -1.04
CD44-227ENST00000528086 PLA1AQ53H76 456 aa8.58□□□□□ -1.04
CD44-227ENST00000528086 C6orf141Q5SZD1 244 aa8.58□□□□□ -1.04
CD44-227ENST00000528086 FAM27D1Q5T7N8 215 aa8.58□□□□□ -1.04
CD44-227ENST00000528086 RSBN1Q5VWQ0 802 aaPredicted RBP8.58□□□□□ -1.04
CD44-227ENST00000528086 UNQ9370/PRO34162Q6UXP9 181 aa8.58□□□□□ -1.04
CD44-227ENST00000528086 HEPN1Q6WQI6 88 aa8.58□□□□□ -1.04
CD44-227ENST00000528086 GDPGP1Q6ZNW5 385 aa8.58□□□□□ -1.04
CD44-227ENST00000528086 SATL1Q86VE3 508 aa8.58□□□□□ -1.04
CD44-227ENST00000528086 OR13A1Q8NGR1 328 aa8.58□□□□□ -1.04
CD44-227ENST00000528086 OR5R1Q8NH85 324 aa8.58□□□□□ -1.04
CD44-227ENST00000528086 SGMS2Q8NHU3 365 aa8.58□□□□□ -1.04
CD44-227ENST00000528086 HAVCR2Q8TDQ0 301 aa8.58□□□□□ -1.04
CD44-227ENST00000528086 DERL3Q96Q80 235 aa8.58□□□□□ -1.04
CD44-227ENST00000528086 NR1H4Q96RI1 486 aaPredicted RBP8.58□□□□□ -1.04
CD44-227ENST00000528086 TMEM133Q9H2Q1 129 aa8.58□□□□□ -1.04
CD44-227ENST00000528086 LINC00574Q9H8X3 128 aa8.58□□□□□ -1.04
CD44-227ENST00000528086 RHOFQ9HBH0 211 aa8.58□□□□□ -1.04
CD44-227ENST00000528086 BEX1Q9HBH7 125 aa8.58□□□□□ -1.04
CD44-227ENST00000528086 ZNF286AQ9HBT8 521 aa8.58□□□□□ -1.04
CD44-227ENST00000528086 NEK6Q9HC98 313 aa8.58□□□□□ -1.04
CD44-227ENST00000528086 TMEM138Q9NPI0 162 aa8.58□□□□□ -1.04
CD44-227ENST00000528086 ING3Q9NXR8 418 aa8.58□□□□□ -1.04
CD44-227ENST00000528086 IL36GQ9NZH8 169 aa8.58□□□□□ -1.04
CD44-227ENST00000528086 UBE2J1Q9Y385 318 aaPredicted RBP8.58□□□□□ -1.04
CD44-227ENST00000528086 SESN1Q9Y6P5 492 aa8.58□□□□□ -1.04
CD44-227ENST00000528086 IRGMA1A4Y4 181 aa8.57□□□□□ -1.04
CD44-227ENST00000528086 FAM90A22PA8MWA6 464 aa8.57□□□□□ -1.04
CD44-227ENST00000528086 H0YJX3 145 aa8.57□□□□□ -1.04
CD44-227ENST00000528086 HSPB6O14558 160 aa8.57□□□□□ -1.04
CD44-227ENST00000528086 DEGS1O15121 323 aa8.57□□□□□ -1.04
CD44-227ENST00000528086 CYB5AP00167 134 aa8.57□□□□□ -1.04
CD44-227ENST00000528086 PAHP00439 452 aa8.57□□□□□ -1.04
CD44-227ENST00000528086 CRYBA1P05813 215 aa8.57□□□□□ -1.04
CD44-227ENST00000528086 CD1AP06126 327 aa8.57□□□□□ -1.04
CD44-227ENST00000528086 ZNF44P15621 663 aa8.57□□□□□ -1.04
CD44-227ENST00000528086 MYL12AP19105 171 aa8.57□□□□□ -1.04
CD44-227ENST00000528086 FSTP19883 344 aa8.57□□□□□ -1.04
CD44-227ENST00000528086 CDK2P24941 298 aa8.57□□□□□ -1.04
CD44-227ENST00000528086 BDKRB2P30411 391 aa8.57□□□□□ -1.04
CD44-227ENST00000528086 TGFBR2P37173 567 aa8.57□□□□□ -1.04
CD44-227ENST00000528086 SLC35A2P78381 396 aa8.57□□□□□ -1.04
CD44-227ENST00000528086 PAX5Q02548 391 aa8.57□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms