RNA–Protein interactions for RNA: ENST00000527827.1

CPSF1-202, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 619 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-202ENST00000527827 FAM90A18PA6NE21 464 aa18.67■□□□□ 0.58
CPSF1-202ENST00000527827 FAM90A16PA6NEW6 464 aa18.67■□□□□ 0.58
CPSF1-202ENST00000527827 FAM90A20PA6NIJ5 464 aa18.67■□□□□ 0.58
CPSF1-202ENST00000527827 FAM90A9PA6NNJ1 464 aa18.67■□□□□ 0.58
CPSF1-202ENST00000527827 FAM90A12PA8MX19 464 aa18.67■□□□□ 0.58
CPSF1-202ENST00000527827 FAM90A5PA8MXJ8 464 aa18.67■□□□□ 0.58
CPSF1-202ENST00000527827 OOSP1A8MZH6 123 aa18.67■□□□□ 0.58
CPSF1-202ENST00000527827 KDM4BO94953 1096 aa18.67■□□□□ 0.58
CPSF1-202ENST00000527827 FAM90A15PP0C7V4 464 aa18.67■□□□□ 0.58
CPSF1-202ENST00000527827 FAM90A13PP0C7W8 464 aa18.67■□□□□ 0.58
CPSF1-202ENST00000527827 FAM90A14PP0C7W9 464 aa18.67■□□□□ 0.58
CPSF1-202ENST00000527827 FAM90A24PP0C7X0 464 aa18.67■□□□□ 0.58
CPSF1-202ENST00000527827 PTGFRP43088 359 aa18.67■□□□□ 0.58
CPSF1-202ENST00000527827 OR3A4PP47883 348 aa18.67■□□□□ 0.58
CPSF1-202ENST00000527827 PRRX1P54821 245 aa18.67■□□□□ 0.58
CPSF1-202ENST00000527827 RPL23AP62750 156 aaKnown RBP18.67■□□□□ 0.58
CPSF1-202ENST00000527827 TP53I3Q53FA7 332 aa18.67■□□□□ 0.58
CPSF1-202ENST00000527827 C18orf65Q6ZTR6 163 aa18.67■□□□□ 0.58
CPSF1-202ENST00000527827 DPF1Q92782 380 aa18.67■□□□□ 0.58
CPSF1-202ENST00000527827 MOB4Q9Y3A3 225 aa18.67■□□□□ 0.58
CPSF1-202ENST00000527827 HSPE1-MOB4S4R3N1 261 aa18.67■□□□□ 0.58
CPSF1-202ENST00000527827 CSN2P05814 226 aa18.66■□□□□ 0.58
CPSF1-202ENST00000527827 CCDC159P0C7I6 412 aa18.66■□□□□ 0.58
CPSF1-202ENST00000527827 MNDAP41218 407 aa18.66■□□□□ 0.58
CPSF1-202ENST00000527827 ZNF85Q03923 595 aa18.66■□□□□ 0.58
CPSF1-202ENST00000527827 RBM39Q14498 530 aaKnown RBP18.66■□□□□ 0.58
CPSF1-202ENST00000527827 CCDC144NLQ6NUI1 221 aa18.66■□□□□ 0.58
CPSF1-202ENST00000527827 Q6P435 159 aa18.66■□□□□ 0.58
CPSF1-202ENST00000527827 OR51D1Q8NGF3 324 aa18.66■□□□□ 0.58
CPSF1-202ENST00000527827 OR4D6Q8NGJ1 314 aa18.66■□□□□ 0.58
CPSF1-202ENST00000527827 FGGYQ96C11 551 aa18.66■□□□□ 0.58
CPSF1-202ENST00000527827 OPALINQ96PE5 141 aa18.66■□□□□ 0.58
CPSF1-202ENST00000527827 GNG8Q9UK08 70 aa18.66■□□□□ 0.58
CPSF1-202ENST00000527827 G3V2T6 193 aa18.65■□□□□ 0.58
CPSF1-202ENST00000527827 FAM106CPP0CH98 169 aa18.65■□□□□ 0.58
CPSF1-202ENST00000527827 KRBOX4Q5JUW0 171 aa18.65■□□□□ 0.58
CPSF1-202ENST00000527827 TMEM244Q5VVB8 128 aa18.65■□□□□ 0.58
CPSF1-202ENST00000527827 OR2W3Q7Z3T1 314 aa18.65■□□□□ 0.58
CPSF1-202ENST00000527827 THNSL2Q86YJ6 484 aa18.65■□□□□ 0.58
CPSF1-202ENST00000527827 OR2G2Q8NGZ5 317 aa18.65■□□□□ 0.58
CPSF1-202ENST00000527827 SPSB1Q96BD6 273 aa18.65■□□□□ 0.58
CPSF1-202ENST00000527827 NOL4LQ96MY1 436 aaPredicted RBP18.65■□□□□ 0.58
CPSF1-202ENST00000527827 SPACA5Q96QH8 159 aa18.65■□□□□ 0.58
CPSF1-202ENST00000527827 ING3Q9NXR8 418 aa18.65■□□□□ 0.58
CPSF1-202ENST00000527827 ZNF729A6NN14 1252 aaPredicted RBP18.64■□□□□ 0.57
CPSF1-202ENST00000527827 SLC33A1O00400 549 aaPredicted RBP18.64■□□□□ 0.57
CPSF1-202ENST00000527827 GYG2O15488 501 aa18.64■□□□□ 0.57
CPSF1-202ENST00000527827 ZNF44P15621 663 aa18.64■□□□□ 0.57
CPSF1-202ENST00000527827 SCN1BQ07699 218 aa18.64■□□□□ 0.57
CPSF1-202ENST00000527827 ATP6AP1Q15904 470 aa18.64■□□□□ 0.57
CPSF1-202ENST00000527827 DNAL1Q4LDG9 190 aa18.64■□□□□ 0.57
CPSF1-202ENST00000527827 C8orf86Q6ZUL3 223 aa18.64■□□□□ 0.57
CPSF1-202ENST00000527827 FAM220AQ7Z4H9 259 aa18.64■□□□□ 0.57
CPSF1-202ENST00000527827 MBOAT4Q96T53 435 aa18.64■□□□□ 0.57
CPSF1-202ENST00000527827 MCRIP2Q9BUT9 160 aaKnown RBP18.64■□□□□ 0.57
CPSF1-202ENST00000527827 GABARAPL1Q9H0R8 117 aa18.64■□□□□ 0.57
CPSF1-202ENST00000527827 PPIL3Q9H2H8 161 aaKnown RBP18.64■□□□□ 0.57
CPSF1-202ENST00000527827 SNRNP70P08621 437 aaKnown RBP18.63■□□□□ 0.57
CPSF1-202ENST00000527827 CGB3P0DN86 165 aa18.63■□□□□ 0.57
CPSF1-202ENST00000527827 CGB7P0DN87 165 aa18.63■□□□□ 0.57
CPSF1-202ENST00000527827 ZNF20P17024 532 aa18.63■□□□□ 0.57
CPSF1-202ENST00000527827 ATP6V1E1P36543 226 aa18.63■□□□□ 0.57
CPSF1-202ENST00000527827 POLR2IP36954 125 aaKnown RBP18.63■□□□□ 0.57
CPSF1-202ENST00000527827 NANOS3P60323 173 aaKnown RBP18.63■□□□□ 0.57
CPSF1-202ENST00000527827 ATXN7L3Q14CW9 347 aaPredicted RBP18.63■□□□□ 0.57
CPSF1-202ENST00000527827 C5orf56Q8N8D9 126 aa18.63■□□□□ 0.57
CPSF1-202ENST00000527827 OR5D18Q8NGL1 313 aa18.63■□□□□ 0.57
CPSF1-202ENST00000527827 OR10AC1Q8NH08 325 aa18.63■□□□□ 0.57
CPSF1-202ENST00000527827 OR9G1Q8NH87 305 aa18.63■□□□□ 0.57
CPSF1-202ENST00000527827 TOMM40LQ969M1 308 aa18.63■□□□□ 0.57
CPSF1-202ENST00000527827 SLC7A6OSQ96CW6 309 aaPredicted RBP18.63■□□□□ 0.57
CPSF1-202ENST00000527827 KIRREL1Q96J84 757 aa18.63■□□□□ 0.57
CPSF1-202ENST00000527827 P2RX4Q99571 388 aa18.63■□□□□ 0.57
CPSF1-202ENST00000527827 FRRS1LQ9P0K9 344 aa18.63■□□□□ 0.57
CPSF1-202ENST00000527827 KBTBD11-OT1A0A1B0GTJ5 212 aa18.62■□□□□ 0.57
CPSF1-202ENST00000527827 ISG15P05161 165 aa18.62■□□□□ 0.57
CPSF1-202ENST00000527827 NFYBP25208 207 aa18.62■□□□□ 0.57
CPSF1-202ENST00000527827 MYCNOSP40205 109 aa18.62■□□□□ 0.57
CPSF1-202ENST00000527827 TMED1Q13445 227 aa18.62■□□□□ 0.57
CPSF1-202ENST00000527827 CHST4Q8NCG5 386 aa18.62■□□□□ 0.57
CPSF1-202ENST00000527827 OR51A4Q8NGJ6 313 aa18.62■□□□□ 0.57
CPSF1-202ENST00000527827 OR56B4Q8NH76 319 aa18.62■□□□□ 0.57
CPSF1-202ENST00000527827 CHPT1Q8WUD6 406 aa18.62■□□□□ 0.57
CPSF1-202ENST00000527827 RPEQ96AT9 228 aa18.62■□□□□ 0.57
CPSF1-202ENST00000527827 EME1Q96AY2 570 aa18.62■□□□□ 0.57
CPSF1-202ENST00000527827 CIB1Q99828 191 aa18.62■□□□□ 0.57
CPSF1-202ENST00000527827 RHOFQ9HBH0 211 aa18.62■□□□□ 0.57
CPSF1-202ENST00000527827 A0A1W2PPI3 338 aa18.61■□□□□ 0.57
CPSF1-202ENST00000527827 MT-ND2P03891 347 aa18.61■□□□□ 0.57
CPSF1-202ENST00000527827 DCTN2Q13561 401 aaKnown RBP18.61■□□□□ 0.57
CPSF1-202ENST00000527827 CDK5R1Q15078 307 aa18.61■□□□□ 0.57
CPSF1-202ENST00000527827 FDX2Q6P4F2 183 aa18.61■□□□□ 0.57
CPSF1-202ENST00000527827 SAXO1Q8IYX7 474 aa18.61■□□□□ 0.57
CPSF1-202ENST00000527827 DRAM1Q8N682 238 aa18.61■□□□□ 0.57
CPSF1-202ENST00000527827 OR13C9Q8NGT0 318 aa18.61■□□□□ 0.57
CPSF1-202ENST00000527827 PCDHB16Q9NRJ7 776 aa18.61■□□□□ 0.57
CPSF1-202ENST00000527827 ZFP57Q9NU63 452 aa18.61■□□□□ 0.57
CPSF1-202ENST00000527827 OR6C3Q9NZP0 311 aa18.61■□□□□ 0.57
CPSF1-202ENST00000527827 ENOPH1Q9UHY7 261 aa18.61■□□□□ 0.57
CPSF1-202ENST00000527827 LINC00527Q9UJ94 153 aa18.61■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms