RNA–Protein interactions for RNA: ENST00000516428.1

RNU4-54P-201, Transcript of RNA, U4 small nuclear 54, pseudogene, humanhuman

BASIC

Gene RNU4-54P, Length 129 nt, Biotype snRNA, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU4-54P-201ENST00000516428 AQP1P29972 269 aa0.44□□□□□ -2.34
RNU4-54P-201ENST00000516428 ERP29P30040 261 aaKnown RBP0.44□□□□□ -2.34
RNU4-54P-201ENST00000516428 MIPP30301 263 aa0.44□□□□□ -2.34
RNU4-54P-201ENST00000516428 GRPRP30550 384 aa0.44□□□□□ -2.34
RNU4-54P-201ENST00000516428 AGTR1P30556 359 aa0.44□□□□□ -2.34
RNU4-54P-201ENST00000516428 CD70P32970 193 aa0.44□□□□□ -2.34
RNU4-54P-201ENST00000516428 MPIP34949 423 aa0.44□□□□□ -2.34
RNU4-54P-201ENST00000516428 BTCP35070 178 aa0.44□□□□□ -2.34
RNU4-54P-201ENST00000516428 APLNRP35414 380 aa0.44□□□□□ -2.34
RNU4-54P-201ENST00000516428 GGT2P36268 569 aa0.44□□□□□ -2.34
RNU4-54P-201ENST00000516428 TALDO1P37837 337 aa0.44□□□□□ -2.34
RNU4-54P-201ENST00000516428 CDKN2BP42772 138 aa0.44□□□□□ -2.34
RNU4-54P-201ENST00000516428 RPL5P46777 297 aaKnown RBP0.44□□□□□ -2.34
RNU4-54P-201ENST00000516428 OR3A4PP47883 348 aa0.44□□□□□ -2.34
RNU4-54P-201ENST00000516428 OR1E2P47887 323 aa0.44□□□□□ -2.34
RNU4-54P-201ENST00000516428 KLK7P49862 253 aa0.44□□□□□ -2.34
RNU4-54P-201ENST00000516428 P2RY4P51582 365 aa0.44□□□□□ -2.34
RNU4-54P-201ENST00000516428 TDGF1P3P51864 188 aa0.44□□□□□ -2.34
RNU4-54P-201ENST00000516428 RND2P52198 227 aa0.44□□□□□ -2.34
RNU4-54P-201ENST00000516428 NCBP2P52298 156 aaKnown RBP eCLIP0.44□□□□□ -2.34
RNU4-54P-201ENST00000516428 SLC25A1P53007 311 aa0.44□□□□□ -2.34
RNU4-54P-201ENST00000516428 CRYBA4P53673 196 aa0.44□□□□□ -2.34
RNU4-54P-201ENST00000516428 SLC18A1P54219 525 aa0.44□□□□□ -2.34
RNU4-54P-201ENST00000516428 FGF8P55075 233 aaPredicted RBP0.44□□□□□ -2.34
RNU4-54P-201ENST00000516428 RIPPLY3P57055 190 aa0.44□□□□□ -2.34
RNU4-54P-201ENST00000516428 SYNJ2BPP57105 145 aa0.44□□□□□ -2.34
RNU4-54P-201ENST00000516428 TAS2R41P59536 307 aa0.44□□□□□ -2.34
RNU4-54P-201ENST00000516428 TAS2R19P59542 299 aa0.44□□□□□ -2.34
RNU4-54P-201ENST00000516428 CDC42P60953 191 aa0.44□□□□□ -2.34
RNU4-54P-201ENST00000516428 RAB2AP61019 212 aa0.44□□□□□ -2.34
RNU4-54P-201ENST00000516428 UBE2NP61088 152 aaKnown RBP0.44□□□□□ -2.34
RNU4-54P-201ENST00000516428 LYZP61626 148 aa0.44□□□□□ -2.34
RNU4-54P-201ENST00000516428 DAD1P61803 113 aa0.44□□□□□ -2.34
RNU4-54P-201ENST00000516428 RBX1P62877 108 aa0.44□□□□□ -2.34
RNU4-54P-201ENST00000516428 GNG3P63215 75 aa0.44□□□□□ -2.34
RNU4-54P-201ENST00000516428 PSG4Q00888 419 aa0.44□□□□□ -2.34
RNU4-54P-201ENST00000516428 FLI1Q01543 452 aaPredicted RBP0.44□□□□□ -2.34
RNU4-54P-201ENST00000516428 IFITM3Q01628 133 aa0.44□□□□□ -2.34
RNU4-54P-201ENST00000516428 ZNF45Q02386 682 aa0.44□□□□□ -2.34
RNU4-54P-201ENST00000516428 PRDX1Q06830 199 aaKnown RBP0.44□□□□□ -2.34
RNU4-54P-201ENST00000516428 SMAGPQ0VAQ4 97 aa0.44□□□□□ -2.34
RNU4-54P-201ENST00000516428 INCA1Q0VD86 236 aa0.44□□□□□ -2.34
RNU4-54P-201ENST00000516428 LAMTOR4Q0VGL1 99 aa0.44□□□□□ -2.34
RNU4-54P-201ENST00000516428 SKP2Q13309 424 aa0.44□□□□□ -2.34
RNU4-54P-201ENST00000516428 PPP1R1AQ13522 171 aa0.44□□□□□ -2.34
RNU4-54P-201ENST00000516428 APOFQ13790 326 aa0.44□□□□□ -2.34
RNU4-54P-201ENST00000516428 C1DQ13901 141 aaKnown RBP0.44□□□□□ -2.34
RNU4-54P-201ENST00000516428 LY6DQ14210 128 aa0.44□□□□□ -2.34
RNU4-54P-201ENST00000516428 FZD2Q14332 565 aa0.44□□□□□ -2.34
RNU4-54P-201ENST00000516428 ZNF266Q14584 549 aa0.44□□□□□ -2.34
RNU4-54P-201ENST00000516428 KIAA0087Q14695 138 aa0.44□□□□□ -2.34
RNU4-54P-201ENST00000516428 SLC10A1Q14973 349 aa0.44□□□□□ -2.34
RNU4-54P-201ENST00000516428 HERPUD1Q15011 391 aa0.44□□□□□ -2.34
RNU4-54P-201ENST00000516428 CDK10Q15131 360 aa0.44□□□□□ -2.34
RNU4-54P-201ENST00000516428 RSU1Q15404 277 aa0.44□□□□□ -2.34
RNU4-54P-201ENST00000516428 SHHQ15465 462 aa0.44□□□□□ -2.34
RNU4-54P-201ENST00000516428 ZNF239Q16600 458 aaKnown RBP0.44□□□□□ -2.34
RNU4-54P-201ENST00000516428 C4orf26Q17RF5 130 aa0.44□□□□□ -2.34
RNU4-54P-201ENST00000516428 WHAMMP3Q1A5X7 153 aa0.44□□□□□ -2.34
RNU4-54P-201ENST00000516428 RSPO1Q2MKA7 263 aaPredicted RBP0.44□□□□□ -2.34
RNU4-54P-201ENST00000516428 IAH1Q2TAA2 248 aaPredicted RBP0.44□□□□□ -2.34
RNU4-54P-201ENST00000516428 DEFB115Q30KQ5 88 aa0.44□□□□□ -2.34
RNU4-54P-201ENST00000516428 C15orf32Q32M92 178 aa0.44□□□□□ -2.34
RNU4-54P-201ENST00000516428 ACOT6Q3I5F7 207 aaPredicted RBP0.44□□□□□ -2.34
RNU4-54P-201ENST00000516428 KRTAP24-1Q3LI83 254 aa0.44□□□□□ -2.34
RNU4-54P-201ENST00000516428 ZNF404Q494X3 552 aa0.44□□□□□ -2.34
RNU4-54P-201ENST00000516428 KLHL12Q53G59 568 aa0.44□□□□□ -2.34
RNU4-54P-201ENST00000516428 PRR30Q53SZ7 412 aaPredicted RBP0.44□□□□□ -2.34
RNU4-54P-201ENST00000516428 TCEAL5Q5H9L2 206 aa0.44□□□□□ -2.34
RNU4-54P-201ENST00000516428 TCTEX1D4Q5JR98 221 aa0.44□□□□□ -2.34
RNU4-54P-201ENST00000516428 NHLRC3Q5JS37 347 aa0.44□□□□□ -2.34
RNU4-54P-201ENST00000516428 ZNF506Q5JVG8 444 aa0.44□□□□□ -2.34
RNU4-54P-201ENST00000516428 BRMS1LQ5PSV4 323 aa0.44□□□□□ -2.34
RNU4-54P-201ENST00000516428 CASC10Q5T4H9 136 aa0.44□□□□□ -2.34
RNU4-54P-201ENST00000516428 ZNF684Q5T5D7 378 aa0.44□□□□□ -2.34
RNU4-54P-201ENST00000516428 ADAMTSL4-AS1Q5T5F5 129 aa0.44□□□□□ -2.34
RNU4-54P-201ENST00000516428 HENMT1Q5T8I9 393 aaKnown RBP0.44□□□□□ -2.34
RNU4-54P-201ENST00000516428 HES5Q5TA89 166 aa0.44□□□□□ -2.34
RNU4-54P-201ENST00000516428 N4BP2L1Q5TBK1 243 aaPredicted RBP0.44□□□□□ -2.34
RNU4-54P-201ENST00000516428 C1orf195Q5TG92 126 aa0.44□□□□□ -2.34
RNU4-54P-201ENST00000516428 TSPO2Q5TGU0 170 aa0.44□□□□□ -2.34
RNU4-54P-201ENST00000516428 FAM78BQ5VT40 261 aa0.44□□□□□ -2.34
RNU4-54P-201ENST00000516428 MARC1Q5VT66 337 aa0.44□□□□□ -2.34
RNU4-54P-201ENST00000516428 SAMD13Q5VXD3 122 aa0.44□□□□□ -2.34
RNU4-54P-201ENST00000516428 TEX36Q5VZQ5 186 aa0.44□□□□□ -2.34
RNU4-54P-201ENST00000516428 ELP2Q6IA86 826 aa0.44□□□□□ -2.34
RNU4-54P-201ENST00000516428 OR10K2Q6IF99 312 aa0.44□□□□□ -2.34
RNU4-54P-201ENST00000516428 LCN12Q6JVE5 192 aa0.44□□□□□ -2.34
RNU4-54P-201ENST00000516428 ZNF774Q6NX45 483 aa0.44□□□□□ -2.34
RNU4-54P-201ENST00000516428 LPCAT3Q6P1A2 487 aa0.44□□□□□ -2.34
RNU4-54P-201ENST00000516428 SFXN4Q6P4A7 337 aa0.44□□□□□ -2.34
RNU4-54P-201ENST00000516428 ZNF613Q6PF04 617 aa0.44□□□□□ -2.34
RNU4-54P-201ENST00000516428 TBPL2Q6SJ96 375 aa0.44□□□□□ -2.34
RNU4-54P-201ENST00000516428 ARL9Q6T311 187 aa0.44□□□□□ -2.34
RNU4-54P-201ENST00000516428 OPN5Q6U736 354 aa0.44□□□□□ -2.34
RNU4-54P-201ENST00000516428 CXCL17Q6UXB2 119 aa0.44□□□□□ -2.34
RNU4-54P-201ENST00000516428 TOMM20LQ6UXN7 152 aa0.44□□□□□ -2.34
RNU4-54P-201ENST00000516428 CYHR1Q6ZMK1 362 aa0.44□□□□□ -2.34
RNU4-54P-201ENST00000516428 DGAT2L6Q6ZPD8 337 aa0.44□□□□□ -2.34
RNU4-54P-201ENST00000516428 MOB1BQ7L9L4 216 aa0.44□□□□□ -2.34
Retrieved 100 of 20,778 RNA–protein pairs in 66.3 ms