RNA–Protein interactions for RNA: ENST00000512632.5

LIMCH1-215, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 4,792 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-215ENST00000512632 TMEM38BQ9NVV0 291 aa7.99□□□□□ -1.13
LIMCH1-215ENST00000512632 STRAPQ9Y3F4 350 aaKnown RBP7.99□□□□□ -1.13
LIMCH1-215ENST00000512632 HS3ST3B1Q9Y662 390 aa7.99□□□□□ -1.13
LIMCH1-215ENST00000512632 FREM1Q5H8C1 2179 aa7.99□□□□□ -1.13
LIMCH1-215ENST00000512632 KNTC1P50748 2209 aa7.99□□□□□ -1.13
LIMCH1-215ENST00000512632 H3BP45 60 aa7.99□□□□□ -1.13
LIMCH1-215ENST00000512632 ADAM20O43506 726 aa7.99□□□□□ -1.13
LIMCH1-215ENST00000512632 YIF1AO95070 293 aa7.99□□□□□ -1.13
LIMCH1-215ENST00000512632 SMIM6P0DI80 62 aa7.99□□□□□ -1.13
LIMCH1-215ENST00000512632 RPS23P62266 143 aaKnown RBP7.99□□□□□ -1.13
LIMCH1-215ENST00000512632 VAMP2P63027 116 aa7.99□□□□□ -1.13
LIMCH1-215ENST00000512632 ZNF343Q6P1L6 599 aa7.99□□□□□ -1.13
LIMCH1-215ENST00000512632 SLC23A3Q6PIS1 610 aa7.99□□□□□ -1.13
LIMCH1-215ENST00000512632 TBC1D26Q86UD7 250 aa7.99□□□□□ -1.13
LIMCH1-215ENST00000512632 TMEM252Q8N6L7 170 aa7.99□□□□□ -1.13
LIMCH1-215ENST00000512632 LRTM2Q8N967 370 aa7.99□□□□□ -1.13
LIMCH1-215ENST00000512632 OR5C1Q8NGR4 320 aa7.99□□□□□ -1.13
LIMCH1-215ENST00000512632 LIPGQ9Y5X9 500 aa7.99□□□□□ -1.13
LIMCH1-215ENST00000512632 LY6G6EA0A0G2JKS1 128 aa7.98□□□□□ -1.13
LIMCH1-215ENST00000512632 H0YL77 283 aa7.98□□□□□ -1.13
LIMCH1-215ENST00000512632 CLN5O75503 358 aa7.98□□□□□ -1.13
LIMCH1-215ENST00000512632 SCTP09683 121 aa7.98□□□□□ -1.13
LIMCH1-215ENST00000512632 PAX6P26367 422 aa7.98□□□□□ -1.13
LIMCH1-215ENST00000512632 EPHA8P29322 1005 aaPredicted RBP7.98□□□□□ -1.13
LIMCH1-215ENST00000512632 UCP2P55851 309 aa7.98□□□□□ -1.13
LIMCH1-215ENST00000512632 Q6ZSR3 168 aa7.98□□□□□ -1.13
LIMCH1-215ENST00000512632 OR4D5Q8NGN0 318 aa7.98□□□□□ -1.13
LIMCH1-215ENST00000512632 IMMP1LQ96LU5 166 aa7.98□□□□□ -1.13
LIMCH1-215ENST00000512632 FOXB1Q99853 325 aa7.98□□□□□ -1.13
LIMCH1-215ENST00000512632 ZNF251Q9BRH9 671 aa7.98□□□□□ -1.13
LIMCH1-215ENST00000512632 IL36RNQ9UBH0 155 aa7.98□□□□□ -1.13
LIMCH1-215ENST00000512632 U3KQA8 63 aa7.98□□□□□ -1.13
LIMCH1-215ENST00000512632 TRIOBPQ9H2D6 2365 aa7.98□□□□□ -1.13
LIMCH1-215ENST00000512632 HSD17B6O14756 317 aa7.98□□□□□ -1.13
LIMCH1-215ENST00000512632 RFPL3SP0C7P2 107 aa7.98□□□□□ -1.13
LIMCH1-215ENST00000512632 RAB5CP51148 216 aa7.98□□□□□ -1.13
LIMCH1-215ENST00000512632 TSC22D1Q15714 1073 aa7.98□□□□□ -1.13
LIMCH1-215ENST00000512632 WIPI1Q5MNZ9 446 aaPredicted RBP7.98□□□□□ -1.13
LIMCH1-215ENST00000512632 EXTL1Q92935 676 aa7.98□□□□□ -1.13
LIMCH1-215ENST00000512632 TAAR9Q96RI9 348 aa7.98□□□□□ -1.13
LIMCH1-215ENST00000512632 WNT5BQ9H1J7 359 aa7.98□□□□□ -1.13
LIMCH1-215ENST00000512632 TUBA4BQ9H853 241 aa7.98□□□□□ -1.13
LIMCH1-215ENST00000512632 PARPBPQ9NWS1 579 aa7.98□□□□□ -1.13
LIMCH1-215ENST00000512632 IGHV1-45A0A0A0MS14 117 aa7.98□□□□□ -1.13
LIMCH1-215ENST00000512632 RBFOX3A6NFN3 312 aa7.98□□□□□ -1.13
LIMCH1-215ENST00000512632 TMEM50AO95807 157 aa7.98□□□□□ -1.13
LIMCH1-215ENST00000512632 HOXB1P14653 301 aaPredicted RBP7.98□□□□□ -1.13
LIMCH1-215ENST00000512632 FUT6P51993 359 aa7.98□□□□□ -1.13
LIMCH1-215ENST00000512632 SUCLG1P53597 346 aaKnown RBP7.98□□□□□ -1.13
LIMCH1-215ENST00000512632 RBM11P57052 281 aaKnown RBP7.98□□□□□ -1.13
LIMCH1-215ENST00000512632 TCTEX1D2Q8WW35 142 aa7.98□□□□□ -1.13
LIMCH1-215ENST00000512632 INTS12Q96CB8 462 aaKnown RBP7.98□□□□□ -1.13
LIMCH1-215ENST00000512632 METTL1Q9UBP6 276 aaKnown RBP7.98□□□□□ -1.13
LIMCH1-215ENST00000512632 PROB1E7EW31 1015 aa7.98□□□□□ -1.13
LIMCH1-215ENST00000512632 AP4M1O00189 453 aa7.98□□□□□ -1.13
LIMCH1-215ENST00000512632 CBR3O75828 277 aa7.98□□□□□ -1.13
LIMCH1-215ENST00000512632 EPHA1P21709 976 aa7.98□□□□□ -1.13
LIMCH1-215ENST00000512632 RAC3P60763 192 aa7.98□□□□□ -1.13
LIMCH1-215ENST00000512632 RND3P61587 244 aa7.98□□□□□ -1.13
LIMCH1-215ENST00000512632 RPS18P62269 152 aaKnown RBP7.98□□□□□ -1.13
LIMCH1-215ENST00000512632 KIAA0141Q14154 515 aaPredicted RBP7.98□□□□□ -1.13
LIMCH1-215ENST00000512632 IZUMO4Q1ZYL8 232 aa7.98□□□□□ -1.13
LIMCH1-215ENST00000512632 DPPA2Q7Z7J5 298 aa7.98□□□□□ -1.13
LIMCH1-215ENST00000512632 GAPTQ8N292 157 aa7.98□□□□□ -1.13
LIMCH1-215ENST00000512632 SPEM1Q8N4L4 309 aa7.98□□□□□ -1.13
LIMCH1-215ENST00000512632 GLRX2Q9NS18 164 aa7.98□□□□□ -1.13
LIMCH1-215ENST00000512632 ESPL1Q14674 2120 aa7.98□□□□□ -1.13
LIMCH1-215ENST00000512632 IGKV1D-13A0A0B4J2D9 117 aa7.97□□□□□ -1.13
LIMCH1-215ENST00000512632 TRDCB7Z8K6 153 aa7.97□□□□□ -1.13
LIMCH1-215ENST00000512632 TERTO14746 1132 aaKnown RBP7.97□□□□□ -1.13
LIMCH1-215ENST00000512632 IGHV2-5P01817 119 aa7.97□□□□□ -1.13
LIMCH1-215ENST00000512632 IGKV1-13P0DP09 117 aa7.97□□□□□ -1.13
LIMCH1-215ENST00000512632 COX6A1P12074 109 aa7.97□□□□□ -1.13
LIMCH1-215ENST00000512632 TAGLN2P37802 199 aaKnown RBP7.97□□□□□ -1.13
LIMCH1-215ENST00000512632 CXCL12P48061 93 aa7.97□□□□□ -1.13
LIMCH1-215ENST00000512632 DYNLT3P51808 116 aa7.97□□□□□ -1.13
LIMCH1-215ENST00000512632 FAM209BQ5JX69 171 aa7.97□□□□□ -1.13
LIMCH1-215ENST00000512632 ACER2Q5QJU3 275 aa7.97□□□□□ -1.13
LIMCH1-215ENST00000512632 ABHD3Q8WU67 409 aa7.97□□□□□ -1.13
LIMCH1-215ENST00000512632 CCL28Q9NRJ3 127 aa7.97□□□□□ -1.13
LIMCH1-215ENST00000512632 A0A096LPE4 126 aa7.97□□□□□ -1.13
LIMCH1-215ENST00000512632 hCG_38984A0A1B0GV85 526 aa7.97□□□□□ -1.13
LIMCH1-215ENST00000512632 A0A1W2PPZ6 126 aa7.97□□□□□ -1.13
LIMCH1-215ENST00000512632 H3BQ15 152 aa7.97□□□□□ -1.13
LIMCH1-215ENST00000512632 WRBO00258 174 aa7.97□□□□□ -1.13
LIMCH1-215ENST00000512632 CST2P09228 141 aa7.97□□□□□ -1.13
LIMCH1-215ENST00000512632 SPSB3Q6PJ21 355 aa7.97□□□□□ -1.13
LIMCH1-215ENST00000512632 ZNF818PQ6ZRF7 136 aa7.97□□□□□ -1.13
LIMCH1-215ENST00000512632 CCDC54Q8NEL0 328 aa7.97□□□□□ -1.13
LIMCH1-215ENST00000512632 RAB39BQ96DA2 213 aa7.97□□□□□ -1.13
LIMCH1-215ENST00000512632 ZNF845Q96IR2 970 aaPredicted RBP7.97□□□□□ -1.13
LIMCH1-215ENST00000512632 OR2H1Q9GZK4 316 aa7.97□□□□□ -1.13
LIMCH1-215ENST00000512632 TMEM222Q9H0R3 208 aa7.97□□□□□ -1.13
LIMCH1-215ENST00000512632 CRIM1Q9NZV1 1036 aa7.97□□□□□ -1.13
LIMCH1-215ENST00000512632 OR6C6A6NF89 314 aa7.97□□□□□ -1.13
LIMCH1-215ENST00000512632 CHST1O43916 411 aa7.97□□□□□ -1.13
LIMCH1-215ENST00000512632 KLF7O75840 302 aaPredicted RBP7.97□□□□□ -1.13
LIMCH1-215ENST00000512632 NDUFA6P56556 154 aa7.97□□□□□ -1.13
LIMCH1-215ENST00000512632 UBE2KP61086 200 aa7.97□□□□□ -1.13
LIMCH1-215ENST00000512632 ZNF266Q14584 549 aa7.97□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms