RNA–Protein interactions for RNA: ENST00000511496.5

LIMCH1-213, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,439 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-213ENST00000511496 HIDE1A8MVS5 230 aa10.5□□□□□ -0.73
LIMCH1-213ENST00000511496 AHRRA9YTQ3 701 aa10.5□□□□□ -0.73
LIMCH1-213ENST00000511496 HMGB3O15347 200 aaKnown RBP10.5□□□□□ -0.73
LIMCH1-213ENST00000511496 ADMP35318 185 aa10.5□□□□□ -0.73
LIMCH1-213ENST00000511496 COMPP49747 757 aaPredicted RBP10.5□□□□□ -0.73
LIMCH1-213ENST00000511496 NTHL1P78549 312 aa10.5□□□□□ -0.73
LIMCH1-213ENST00000511496 WBP2NLQ6ICG8 309 aa10.5□□□□□ -0.73
LIMCH1-213ENST00000511496 WDR73Q6P4I2 378 aa10.5□□□□□ -0.73
LIMCH1-213ENST00000511496 KCNIP4Q6PIL6 250 aa10.5□□□□□ -0.73
LIMCH1-213ENST00000511496 SLC22A24Q8N4F4 322 aa10.5□□□□□ -0.73
LIMCH1-213ENST00000511496 OR10G4Q8NGN3 311 aa10.5□□□□□ -0.73
LIMCH1-213ENST00000511496 TMEM234Q8WY98 164 aa10.5□□□□□ -0.73
LIMCH1-213ENST00000511496 GNPNAT1Q96EK6 184 aaPredicted RBP10.5□□□□□ -0.73
LIMCH1-213ENST00000511496 ZC2HC1AQ96GY0 325 aa10.5□□□□□ -0.73
LIMCH1-213ENST00000511496 PLK3Q9H4B4 646 aa10.5□□□□□ -0.73
LIMCH1-213ENST00000511496 ZDHHC11Q9H8X9 412 aa10.5□□□□□ -0.73
LIMCH1-213ENST00000511496 ZNF586Q9NXT0 402 aa10.5□□□□□ -0.73
LIMCH1-213ENST00000511496 SERGEFQ9UGK8 458 aa10.5□□□□□ -0.73
LIMCH1-213ENST00000511496 PHF3Q92576 2039 aaKnown RBP10.5□□□□□ -0.73
LIMCH1-213ENST00000511496 VWA8A3KMH1 1905 aa10.5□□□□□ -0.73
LIMCH1-213ENST00000511496 GAGE12BA1L429 117 aa10.5□□□□□ -0.73
LIMCH1-213ENST00000511496 TSPOP30536 169 aa10.5□□□□□ -0.73
LIMCH1-213ENST00000511496 TAS2R30P59541 319 aa10.5□□□□□ -0.73
LIMCH1-213ENST00000511496 UBE2NP61088 152 aaKnown RBP10.5□□□□□ -0.73
LIMCH1-213ENST00000511496 FAM53BQ14153 422 aa10.5□□□□□ -0.73
LIMCH1-213ENST00000511496 TRIM61Q5EBN2 209 aa10.5□□□□□ -0.73
LIMCH1-213ENST00000511496 GATSQ8NAP1 163 aa10.5□□□□□ -0.73
LIMCH1-213ENST00000511496 OR52L2PQ8NGH6 319 aa10.5□□□□□ -0.73
LIMCH1-213ENST00000511496 KLF16Q9BXK1 252 aaPredicted RBP10.5□□□□□ -0.73
LIMCH1-213ENST00000511496 RPRMQ9NS64 109 aa10.5□□□□□ -0.73
LIMCH1-213ENST00000511496 HCFC1R1Q9NWW0 138 aa10.5□□□□□ -0.73
LIMCH1-213ENST00000511496 FBXL7Q9UJT9 491 aa10.5□□□□□ -0.73
LIMCH1-213ENST00000511496 BPNT1O95861 308 aa10.49□□□□□ -0.73
LIMCH1-213ENST00000511496 POU2F2P09086 479 aa10.49□□□□□ -0.73
LIMCH1-213ENST00000511496 FSTP19883 344 aa10.49□□□□□ -0.73
LIMCH1-213ENST00000511496 CST5P28325 142 aaPredicted RBP10.49□□□□□ -0.73
LIMCH1-213ENST00000511496 ARF3P61204 181 aaPredicted RBP10.49□□□□□ -0.73
LIMCH1-213ENST00000511496 ARF1P84077 181 aaKnown RBP10.49□□□□□ -0.73
LIMCH1-213ENST00000511496 KCTD18Q6PI47 426 aaPredicted RBP10.49□□□□□ -0.73
LIMCH1-213ENST00000511496 FIGLAQ6QHK4 219 aa10.49□□□□□ -0.73
LIMCH1-213ENST00000511496 HIST2H2ABQ8IUE6 130 aaPredicted RBP10.49□□□□□ -0.73
LIMCH1-213ENST00000511496 C1orf174Q8IYL3 243 aa10.49□□□□□ -0.73
LIMCH1-213ENST00000511496 SIGLECL1Q8N7X8 197 aa10.49□□□□□ -0.73
LIMCH1-213ENST00000511496 SLAMF6Q96DU3 332 aa10.49□□□□□ -0.73
LIMCH1-213ENST00000511496 GPER1Q99527 375 aa10.49□□□□□ -0.73
LIMCH1-213ENST00000511496 MTIF3Q9H2K0 278 aaKnown RBP10.49□□□□□ -0.73
LIMCH1-213ENST00000511496 NXT1Q9UKK6 140 aaKnown RBP10.49□□□□□ -0.73
LIMCH1-213ENST00000511496 FREM3P0C091 2139 aa10.49□□□□□ -0.73
LIMCH1-213ENST00000511496 CORTO00230 105 aa10.49□□□□□ -0.73
LIMCH1-213ENST00000511496 NKX2-1P43699 371 aaPredicted RBP10.49□□□□□ -0.73
LIMCH1-213ENST00000511496 TAS2R46P59540 309 aa10.49□□□□□ -0.73
LIMCH1-213ENST00000511496 ZNF154Q13106 437 aa10.49□□□□□ -0.73
LIMCH1-213ENST00000511496 NNATQ16517 81 aa10.49□□□□□ -0.73
LIMCH1-213ENST00000511496 ZNF547Q8IVP9 402 aa10.49□□□□□ -0.73
LIMCH1-213ENST00000511496 SHISA5Q8N114 240 aa10.49□□□□□ -0.73
LIMCH1-213ENST00000511496 TMEM252Q8N6L7 170 aa10.49□□□□□ -0.73
LIMCH1-213ENST00000511496 RTN4IP1Q8WWV3 396 aaPredicted RBP10.49□□□□□ -0.73
LIMCH1-213ENST00000511496 TMEM59Q9BXS4 323 aa10.49□□□□□ -0.73
LIMCH1-213ENST00000511496 SLC46A2Q9BY10 475 aa10.49□□□□□ -0.73
LIMCH1-213ENST00000511496 VSIRQ9H7M9 311 aa10.49□□□□□ -0.73
LIMCH1-213ENST00000511496 DNAJB12Q9NXW2 375 aaKnown RBP10.49□□□□□ -0.73
LIMCH1-213ENST00000511496 IGKV1D-8A0A087WSZ0 117 aa10.49□□□□□ -0.73
LIMCH1-213ENST00000511496 A0A1W2PR80 420 aa10.49□□□□□ -0.73
LIMCH1-213ENST00000511496 OR2T8A6NH00 312 aa10.49□□□□□ -0.73
LIMCH1-213ENST00000511496 CRYM-AS1A6NIL9 109 aa10.49□□□□□ -0.73
LIMCH1-213ENST00000511496 SLC16A7O60669 478 aa10.49□□□□□ -0.73
LIMCH1-213ENST00000511496 CCR5P51681 352 aa10.49□□□□□ -0.73
LIMCH1-213ENST00000511496 QRFPP83859 136 aa10.49□□□□□ -0.73
LIMCH1-213ENST00000511496 CYP2G1PQ6ZSU1 146 aa10.49□□□□□ -0.73
LIMCH1-213ENST00000511496 OR4N2Q8NGD1 307 aa10.49□□□□□ -0.73
LIMCH1-213ENST00000511496 DAZLQ92904 295 aaKnown RBP10.49□□□□□ -0.73
LIMCH1-213ENST00000511496 TSPAN32Q96QS1 320 aa10.49□□□□□ -0.73
LIMCH1-213ENST00000511496 IGKV1-8A0A0C4DH67 115 aa10.48□□□□□ -0.73
LIMCH1-213ENST00000511496 OR5B21A6NL26 309 aa10.48□□□□□ -0.73
LIMCH1-213ENST00000511496 F2Z2F3 143 aa10.48□□□□□ -0.73
LIMCH1-213ENST00000511496 SEMA4FO95754 770 aa10.48□□□□□ -0.73
LIMCH1-213ENST00000511496 FAHP16930 419 aa10.48□□□□□ -0.73
LIMCH1-213ENST00000511496 GABRA2P47869 451 aa10.48□□□□□ -0.73
LIMCH1-213ENST00000511496 SLC6A8P48029 635 aa10.48□□□□□ -0.73
LIMCH1-213ENST00000511496 MORN2Q502X0 79 aa10.48□□□□□ -0.73
LIMCH1-213ENST00000511496 TMEFF1Q8IYR6 380 aa10.48□□□□□ -0.73
LIMCH1-213ENST00000511496 CMTM8Q8IZV2 173 aa10.48□□□□□ -0.73
LIMCH1-213ENST00000511496 OR14C36Q8NHC7 312 aa10.48□□□□□ -0.73
LIMCH1-213ENST00000511496 RSG1Q9BU20 258 aa10.48□□□□□ -0.73
LIMCH1-213ENST00000511496 H3BP45 60 aa10.48□□□□□ -0.73
LIMCH1-213ENST00000511496 CRISP2P16562 243 aa10.48□□□□□ -0.73
LIMCH1-213ENST00000511496 GPR1P46091 355 aa10.48□□□□□ -0.73
LIMCH1-213ENST00000511496 GFRA1P56159 465 aa10.48□□□□□ -0.73
LIMCH1-213ENST00000511496 CLDN18P56856 261 aa10.48□□□□□ -0.73
LIMCH1-213ENST00000511496 ZNF468Q5VIY5 522 aaPredicted RBP10.48□□□□□ -0.73
LIMCH1-213ENST00000511496 SAMD13Q5VXD3 122 aa10.48□□□□□ -0.73
LIMCH1-213ENST00000511496 ZNF765Q7L2R6 523 aa10.48□□□□□ -0.73
LIMCH1-213ENST00000511496 COMMD2Q86X83 199 aa10.48□□□□□ -0.73
LIMCH1-213ENST00000511496 OR51T1Q8NGJ9 327 aa10.48□□□□□ -0.73
LIMCH1-213ENST00000511496 RHBDD1Q8TEB9 315 aa10.48□□□□□ -0.73
LIMCH1-213ENST00000511496 ADAT3Q96EY9 351 aaPredicted RBP10.48□□□□□ -0.73
LIMCH1-213ENST00000511496 WDYHV1Q96HA8 205 aa10.48□□□□□ -0.73
LIMCH1-213ENST00000511496 VDAC3Q9Y277 283 aa10.48□□□□□ -0.73
LIMCH1-213ENST00000511496 PROB1E7EW31 1015 aa10.48□□□□□ -0.73
LIMCH1-213ENST00000511496 G3V3Y1 287 aa10.48□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms