RNA–Protein interactions for RNA: ENST00000509454.5

LIMCH1-210, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 1,506 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-210ENST00000509454 RIPPLY3P57055 190 aa9.41□□□□□ -0.9
LIMCH1-210ENST00000509454 PRB3Q04118 309 aaPredicted RBP9.41□□□□□ -0.9
LIMCH1-210ENST00000509454 TAF9Q16594 264 aa9.41□□□□□ -0.9
LIMCH1-210ENST00000509454 KRBOX4Q5JUW0 171 aa9.41□□□□□ -0.9
LIMCH1-210ENST00000509454 HES5Q5TA89 166 aa9.41□□□□□ -0.9
LIMCH1-210ENST00000509454 GPR157Q5UAW9 335 aa9.41□□□□□ -0.9
LIMCH1-210ENST00000509454 TMEM200BQ69YZ2 307 aa9.41□□□□□ -0.9
LIMCH1-210ENST00000509454 CD200R1LQ6Q8B3 271 aa9.41□□□□□ -0.9
LIMCH1-210ENST00000509454 VMO1Q7Z5L0 202 aa9.41□□□□□ -0.9
LIMCH1-210ENST00000509454 BPIFB2Q8N4F0 458 aa9.41□□□□□ -0.9
LIMCH1-210ENST00000509454 LY6G5BQ8NDX9 201 aa9.41□□□□□ -0.9
LIMCH1-210ENST00000509454 OR51T1Q8NGJ9 327 aa9.41□□□□□ -0.9
LIMCH1-210ENST00000509454 C8orf46Q8TAG6 207 aa9.41□□□□□ -0.9
LIMCH1-210ENST00000509454 C22orf15Q8WYQ4 148 aa9.41□□□□□ -0.9
LIMCH1-210ENST00000509454 LHX4Q969G2 390 aa9.41□□□□□ -0.9
LIMCH1-210ENST00000509454 MS4A7Q9GZW8 240 aaPredicted RBP9.41□□□□□ -0.9
LIMCH1-210ENST00000509454 KCNK15Q9H427 330 aa9.41□□□□□ -0.9
LIMCH1-210ENST00000509454 SEBOXQ9HB31 216 aaPredicted RBP9.41□□□□□ -0.9
LIMCH1-210ENST00000509454 GHRLQ9UBU3 117 aa9.41□□□□□ -0.9
LIMCH1-210ENST00000509454 KPTNQ9Y664 436 aa9.41□□□□□ -0.9
LIMCH1-210ENST00000509454 TRAV1-2A0A0B4J238 106 aa9.41□□□□□ -0.9
LIMCH1-210ENST00000509454 hCG_1809904A0A1W2PP81 198 aa9.41□□□□□ -0.9
LIMCH1-210ENST00000509454 A0A1W2PPE2 198 aa9.41□□□□□ -0.9
LIMCH1-210ENST00000509454 A0A1W2PR64 198 aa9.41□□□□□ -0.9
LIMCH1-210ENST00000509454 A0A1W2PRV1 198 aa9.41□□□□□ -0.9
LIMCH1-210ENST00000509454 hADV38S2A0JD32 116 aa9.41□□□□□ -0.9
LIMCH1-210ENST00000509454 SLC17A2O00624 439 aa9.41□□□□□ -0.9
LIMCH1-210ENST00000509454 BPNT1O95861 308 aa9.41□□□□□ -0.9
LIMCH1-210ENST00000509454 IGHV4-38-2P0DP08 117 aa9.41□□□□□ -0.9
LIMCH1-210ENST00000509454 ARSBP15848 533 aa9.41□□□□□ -0.9
LIMCH1-210ENST00000509454 CCL3L1P16619 93 aa9.41□□□□□ -0.9
LIMCH1-210ENST00000509454 HOXB4P17483 251 aaPredicted RBP9.41□□□□□ -0.9
LIMCH1-210ENST00000509454 GALP22466 123 aa9.41□□□□□ -0.9
LIMCH1-210ENST00000509454 CLDN12P56749 244 aa9.41□□□□□ -0.9
LIMCH1-210ENST00000509454 OR10A3P58181 314 aa9.41□□□□□ -0.9
LIMCH1-210ENST00000509454 AESQ08117 197 aa9.41□□□□□ -0.9
LIMCH1-210ENST00000509454 ZNF273Q14593 569 aa9.41□□□□□ -0.9
LIMCH1-210ENST00000509454 C1orf100Q5SVJ3 147 aa9.41□□□□□ -0.9
LIMCH1-210ENST00000509454 OR10K2Q6IF99 312 aa9.41□□□□□ -0.9
LIMCH1-210ENST00000509454 BRICD5Q6PL45 260 aa9.41□□□□□ -0.9
LIMCH1-210ENST00000509454 LINC00596Q86U02 117 aa9.41□□□□□ -0.9
LIMCH1-210ENST00000509454 KIR3DL3Q8N743 410 aa9.41□□□□□ -0.9
LIMCH1-210ENST00000509454 SUMF2Q8NBJ7 301 aa9.41□□□□□ -0.9
LIMCH1-210ENST00000509454 TMEM104Q8NE00 496 aa9.41□□□□□ -0.9
LIMCH1-210ENST00000509454 UPRTQ96BW1 309 aa9.41□□□□□ -0.9
LIMCH1-210ENST00000509454 KCTD7Q96MP8 289 aa9.41□□□□□ -0.9
LIMCH1-210ENST00000509454 TBX15Q96SF7 602 aa9.41□□□□□ -0.9
LIMCH1-210ENST00000509454 GFI1Q99684 422 aa9.41□□□□□ -0.9
LIMCH1-210ENST00000509454 DPCDQ9BVM2 203 aaPredicted RBP9.41□□□□□ -0.9
LIMCH1-210ENST00000509454 SIRPDQ9H106 197 aa9.41□□□□□ -0.9
LIMCH1-210ENST00000509454 NUP50Q9UKX7 468 aa9.41□□□□□ -0.9
LIMCH1-210ENST00000509454 SETD2Q9BYW2 2564 aaPredicted RBP9.41□□□□□ -0.9
LIMCH1-210ENST00000509454 C2CD3Q4AC94 2353 aa9.4□□□□□ -0.9
LIMCH1-210ENST00000509454 TRGV10A0A0A0MS01 117 aa9.4□□□□□ -0.91
LIMCH1-210ENST00000509454 TRAV24A0A0B4J272 114 aa9.4□□□□□ -0.91
LIMCH1-210ENST00000509454 A0A1W2PRD5 423 aa9.4□□□□□ -0.91
LIMCH1-210ENST00000509454 A0A1W2PRF3 423 aa9.4□□□□□ -0.91
LIMCH1-210ENST00000509454 A0A1W2PRM7 423 aa9.4□□□□□ -0.91
LIMCH1-210ENST00000509454 M0R1W7 72 aa9.4□□□□□ -0.91
LIMCH1-210ENST00000509454 SLC22A1O15245 554 aa9.4□□□□□ -0.91
LIMCH1-210ENST00000509454 AIREO43918 545 aa9.4□□□□□ -0.91
LIMCH1-210ENST00000509454 VSIG8P0DPA2 414 aa9.4□□□□□ -0.91
LIMCH1-210ENST00000509454 FPR2P25090 351 aa9.4□□□□□ -0.91
LIMCH1-210ENST00000509454 RANBP1P43487 201 aa9.4□□□□□ -0.91
LIMCH1-210ENST00000509454 GLIPR1P48060 266 aa9.4□□□□□ -0.91
LIMCH1-210ENST00000509454 DLX1P56177 255 aa9.4□□□□□ -0.91
LIMCH1-210ENST00000509454 P2RX3P56373 397 aa9.4□□□□□ -0.91
LIMCH1-210ENST00000509454 MXD1Q05195 221 aa9.4□□□□□ -0.91
LIMCH1-210ENST00000509454 MPV17LQ2QL34 196 aa9.4□□□□□ -0.91
LIMCH1-210ENST00000509454 TIMM50Q3ZCQ8 353 aa9.4□□□□□ -0.91
LIMCH1-210ENST00000509454 NHLRC3Q5JS37 347 aa9.4□□□□□ -0.91
LIMCH1-210ENST00000509454 NKAPLQ5M9Q1 402 aa9.4□□□□□ -0.91
LIMCH1-210ENST00000509454 BRD3OSQ6XYD6 125 aa9.4□□□□□ -0.91
LIMCH1-210ENST00000509454 LYPD6Q86Y78 171 aa9.4□□□□□ -0.91
LIMCH1-210ENST00000509454 Q8NFD4 153 aa9.4□□□□□ -0.91
LIMCH1-210ENST00000509454 KCNG3Q8TAE7 436 aa9.4□□□□□ -0.91
LIMCH1-210ENST00000509454 MRPS24Q96EL2 167 aaKnown RBP9.4□□□□□ -0.91
LIMCH1-210ENST00000509454 TMEM59Q9BXS4 323 aa9.4□□□□□ -0.91
LIMCH1-210ENST00000509454 MRPS26Q9BYN8 205 aaKnown RBP9.4□□□□□ -0.91
LIMCH1-210ENST00000509454 ZNF581Q9P0T4 197 aa9.4□□□□□ -0.91
LIMCH1-210ENST00000509454 STEAP1Q9UHE8 339 aa9.4□□□□□ -0.91
LIMCH1-210ENST00000509454 NAV3Q8IVL0 2385 aa9.39□□□□□ -0.91
LIMCH1-210ENST00000509454 MEIKINA0A087WXM9 373 aa9.39□□□□□ -0.91
LIMCH1-210ENST00000509454 SHISA3A0PJX4 238 aa9.39□□□□□ -0.91
LIMCH1-210ENST00000509454 MCRIP1C9JLW8 97 aa9.39□□□□□ -0.91
LIMCH1-210ENST00000509454 ZNF728P0DKX0 622 aa9.39□□□□□ -0.91
LIMCH1-210ENST00000509454 SMIM18P0DKX4 95 aa9.39□□□□□ -0.91
LIMCH1-210ENST00000509454 MMP9P14780 707 aa9.39□□□□□ -0.91
LIMCH1-210ENST00000509454 JUNBP17275 347 aaPredicted RBP9.39□□□□□ -0.91
LIMCH1-210ENST00000509454 COX7A1P24310 79 aa9.39□□□□□ -0.91
LIMCH1-210ENST00000509454 LMO1P25800 156 aa9.39□□□□□ -0.91
LIMCH1-210ENST00000509454 FGF9P31371 208 aaPredicted RBP9.39□□□□□ -0.91
LIMCH1-210ENST00000509454 GLP1RP43220 463 aa9.39□□□□□ -0.91
LIMCH1-210ENST00000509454 LSM3P62310 102 aaKnown RBP9.39□□□□□ -0.91
LIMCH1-210ENST00000509454 MEF2CQ06413 473 aaPredicted RBP9.39□□□□□ -0.91
LIMCH1-210ENST00000509454 KLRD1Q13241 179 aa9.39□□□□□ -0.91
LIMCH1-210ENST00000509454 KLF17Q5JT82 389 aaPredicted RBP9.39□□□□□ -0.91
LIMCH1-210ENST00000509454 RUSC1-AS1Q66K80 236 aa9.39□□□□□ -0.91
LIMCH1-210ENST00000509454 ZNF782Q6ZMW2 699 aaPredicted RBP9.39□□□□□ -0.91
LIMCH1-210ENST00000509454 OR51D1Q8NGF3 324 aa9.39□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 40.3 ms