RNA–Protein interactions for RNA: ENST00000508604.5

NUP54-208, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 1,671 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-208ENST00000508604 MAST1Q9Y2H9 1570 aa1.35□□□□□ -2.19
NUP54-208ENST00000508604 ABCC6O95255 1503 aa1.35□□□□□ -2.19
NUP54-208ENST00000508604 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP1.35□□□□□ -2.19
NUP54-208ENST00000508604 CFTRP13569 1480 aa1.35□□□□□ -2.19
NUP54-208ENST00000508604 DCCP43146 1447 aa1.35□□□□□ -2.19
NUP54-208ENST00000508604 METP08581 1390 aa1.35□□□□□ -2.19
NUP54-208ENST00000508604 TRAV30A0A087WSZ9 112 aa1.35□□□□□ -2.19
NUP54-208ENST00000508604 A0A087WUJ7 227 aa1.35□□□□□ -2.19
NUP54-208ENST00000508604 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP1.35□□□□□ -2.19
NUP54-208ENST00000508604 IGHV2-70DA0A0C4DH43 119 aa1.35□□□□□ -2.19
NUP54-208ENST00000508604 GLYATL1P3A0A0U1RQE8 302 aa1.35□□□□□ -2.19
NUP54-208ENST00000508604 TMEM269A0A1B0GVZ9 245 aa1.35□□□□□ -2.19
NUP54-208ENST00000508604 IGSF23A1L1A6 192 aa1.35□□□□□ -2.19
NUP54-208ENST00000508604 NKX2-6A6NCS4 301 aa1.35□□□□□ -2.19
NUP54-208ENST00000508604 OR6C6A6NF89 314 aa1.35□□□□□ -2.19
NUP54-208ENST00000508604 VSTM2BA6NLU5 285 aa1.35□□□□□ -2.19
NUP54-208ENST00000508604 FAM166BA8MTA8 275 aa1.35□□□□□ -2.19
NUP54-208ENST00000508604 PPP5D1E7EU14 171 aa1.35□□□□□ -2.19
NUP54-208ENST00000508604 H0Y980 276 aa1.35□□□□□ -2.19
NUP54-208ENST00000508604 RPL36A-HNRNPH2H7BZ11 118 aa1.35□□□□□ -2.19
NUP54-208ENST00000508604 M0R233 179 aa1.35□□□□□ -2.19
NUP54-208ENST00000508604 CORTO00230 105 aa1.35□□□□□ -2.19
NUP54-208ENST00000508604 GPR31O00270 319 aa1.35□□□□□ -2.19
NUP54-208ENST00000508604 UPK1AO00322 258 aa1.35□□□□□ -2.19
NUP54-208ENST00000508604 UBFD1O14562 309 aaKnown RBP1.35□□□□□ -2.19
NUP54-208ENST00000508604 RFXANKO14593 260 aa1.35□□□□□ -2.19
NUP54-208ENST00000508604 MYL12BO14950 172 aa1.35□□□□□ -2.19
NUP54-208ENST00000508604 SIVA1O15304 175 aa1.35□□□□□ -2.19
NUP54-208ENST00000508604 NBR2O15453 112 aa1.35□□□□□ -2.19
NUP54-208ENST00000508604 B4GALT5O43286 388 aa1.35□□□□□ -2.19
NUP54-208ENST00000508604 RAD51CO43502 376 aa1.35□□□□□ -2.19
NUP54-208ENST00000508604 TPST2O60704 377 aa1.35□□□□□ -2.19
NUP54-208ENST00000508604 TBL1XO60907 577 aa1.35□□□□□ -2.19
NUP54-208ENST00000508604 STK16O75716 305 aa1.35□□□□□ -2.19
NUP54-208ENST00000508604 SC5DO75845 299 aa1.35□□□□□ -2.19
NUP54-208ENST00000508604 RCBTB2O95199 551 aa1.35□□□□□ -2.19
NUP54-208ENST00000508604 LRATO95237 230 aa1.35□□□□□ -2.19
NUP54-208ENST00000508604 TMEM50AO95807 157 aa1.35□□□□□ -2.19
NUP54-208ENST00000508604 GCGP01275 180 aa1.35□□□□□ -2.19
NUP54-208ENST00000508604 APODP05090 189 aa1.35□□□□□ -2.19
NUP54-208ENST00000508604 SERPINE2P07093 398 aa1.35□□□□□ -2.19
NUP54-208ENST00000508604 SFTPBP07988 381 aa1.35□□□□□ -2.19
NUP54-208ENST00000508604 NMBP08949 121 aa1.35□□□□□ -2.19
NUP54-208ENST00000508604 WNT2P09544 360 aa1.35□□□□□ -2.19
NUP54-208ENST00000508604 CSF3P09919 207 aa1.35□□□□□ -2.19
NUP54-208ENST00000508604 UGT2B7P16662 529 aa1.35□□□□□ -2.19
NUP54-208ENST00000508604 ZNF14P17017 642 aaPredicted RBP1.35□□□□□ -2.19
NUP54-208ENST00000508604 SDC1P18827 310 aa1.35□□□□□ -2.19
NUP54-208ENST00000508604 MYL12AP19105 171 aa1.35□□□□□ -2.19
NUP54-208ENST00000508604 CELP19835 753 aa1.35□□□□□ -2.19
NUP54-208ENST00000508604 MMP11P24347 488 aa1.35□□□□□ -2.19
NUP54-208ENST00000508604 MYL9P24844 172 aa1.35□□□□□ -2.19
NUP54-208ENST00000508604 HTR2CP28335 458 aa1.35□□□□□ -2.19
NUP54-208ENST00000508604 ADORA1P30542 326 aa1.35□□□□□ -2.19
NUP54-208ENST00000508604 COILP38432 576 aaPredicted RBP1.35□□□□□ -2.19
NUP54-208ENST00000508604 LGALS7P47929 136 aa1.35□□□□□ -2.19
NUP54-208ENST00000508604 SLC6A8P48029 635 aa1.35□□□□□ -2.19
NUP54-208ENST00000508604 SGSHP51688 502 aa1.35□□□□□ -2.19
NUP54-208ENST00000508604 RAG2P55895 527 aa1.35□□□□□ -2.19
NUP54-208ENST00000508604 PIGPP57054 158 aa1.35□□□□□ -2.19
NUP54-208ENST00000508604 SEC61GP60059 68 aa1.35□□□□□ -2.19
NUP54-208ENST00000508604 CKS1BP61024 79 aa1.35□□□□□ -2.19
NUP54-208ENST00000508604 NCS1P62166 190 aa1.35□□□□□ -2.19
NUP54-208ENST00000508604 RANP62826 216 aaKnown RBP1.35□□□□□ -2.19
NUP54-208ENST00000508604 RPL32P62910 135 aaKnown RBP1.35□□□□□ -2.19
NUP54-208ENST00000508604 BTN3A2P78410 334 aa1.35□□□□□ -2.19
NUP54-208ENST00000508604 DEFA5Q01523 94 aa1.35□□□□□ -2.19
NUP54-208ENST00000508604 ZNF85Q03923 595 aa1.35□□□□□ -2.19
NUP54-208ENST00000508604 PPP1R8Q12972 351 aaKnown RBP1.35□□□□□ -2.19
NUP54-208ENST00000508604 NME3Q13232 169 aa1.35□□□□□ -2.19
NUP54-208ENST00000508604 SKP2Q13309 424 aa1.35□□□□□ -2.19
NUP54-208ENST00000508604 JOSD1Q15040 202 aaPredicted RBP1.35□□□□□ -2.19
NUP54-208ENST00000508604 PEA15Q15121 130 aa1.35□□□□□ -2.19
NUP54-208ENST00000508604 SURF2Q15527 256 aaPredicted RBP1.35□□□□□ -2.19
NUP54-208ENST00000508604 CARTPTQ16568 116 aa1.35□□□□□ -2.19
NUP54-208ENST00000508604 NRF1Q16656 503 aa1.35□□□□□ -2.19
NUP54-208ENST00000508604 ZNF404Q494X3 552 aa1.35□□□□□ -2.19
NUP54-208ENST00000508604 MORN2Q502X0 79 aa1.35□□□□□ -2.19
NUP54-208ENST00000508604 CYBRD1Q53TN4 286 aa1.35□□□□□ -2.19
NUP54-208ENST00000508604 MESTQ5EB52 335 aa1.35□□□□□ -2.19
NUP54-208ENST00000508604 PDZD11Q5EBL8 140 aa1.35□□□□□ -2.19
NUP54-208ENST00000508604 SAMD4BQ5PRF9 694 aaKnown RBP1.35□□□□□ -2.19
NUP54-208ENST00000508604 FAM74A1Q5RGS3 127 aa1.35□□□□□ -2.19
NUP54-208ENST00000508604 IDNKQ5T6J7 187 aa1.35□□□□□ -2.19
NUP54-208ENST00000508604 TSPO2Q5TGU0 170 aa1.35□□□□□ -2.19
NUP54-208ENST00000508604 NXNL2Q5VZ03 156 aa1.35□□□□□ -2.19
NUP54-208ENST00000508604 OR2A2Q6IF42 318 aa1.35□□□□□ -2.19
NUP54-208ENST00000508604 RNASEKQ6P5S7 137 aaKnown RBP1.35□□□□□ -2.19
NUP54-208ENST00000508604 SLC39A4Q6P5W5 647 aa1.35□□□□□ -2.19
NUP54-208ENST00000508604 WDR59Q6PJI9 974 aa1.35□□□□□ -2.19
NUP54-208ENST00000508604 SMARCD3Q6STE5 483 aa1.35□□□□□ -2.19
NUP54-208ENST00000508604 FAM159AQ6UWV7 190 aa1.35□□□□□ -2.19
NUP54-208ENST00000508604 TMEM107Q6UX40 140 aa1.35□□□□□ -2.19
NUP54-208ENST00000508604 DRAM2Q6UX65 266 aa1.35□□□□□ -2.19
NUP54-208ENST00000508604 UNQ9370/PRO34162Q6UXP9 181 aa1.35□□□□□ -2.19
NUP54-208ENST00000508604 ZNF620Q6ZNG0 422 aa1.35□□□□□ -2.19
NUP54-208ENST00000508604 COX15Q7KZN9 410 aa1.35□□□□□ -2.19
NUP54-208ENST00000508604 SSX6Q7RTT6 188 aa1.35□□□□□ -2.19
NUP54-208ENST00000508604 ZNF720Q7Z2F6 126 aa1.35□□□□□ -2.19
NUP54-208ENST00000508604 DEFB128Q7Z7B8 93 aa1.35□□□□□ -2.19
Retrieved 100 of 20,778 RNA–protein pairs in 51.3 ms