RNA–Protein interactions for RNA: ENST00000506042.5

SQSTM1-210, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 921 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-210ENST00000506042 POMPQ9Y244 141 aa16.78■□□□□ 0.28
SQSTM1-210ENST00000506042 DBTP11182 482 aaKnown RBP16.77■□□□□ 0.28
SQSTM1-210ENST00000506042 CD24P25063 80 aa16.77■□□□□ 0.28
SQSTM1-210ENST00000506042 FASP25445 335 aa16.77■□□□□ 0.28
SQSTM1-210ENST00000506042 OR3A4PP47883 348 aa16.77■□□□□ 0.28
SQSTM1-210ENST00000506042 NPBWR2P48146 333 aa16.77■□□□□ 0.28
SQSTM1-210ENST00000506042 EGFEM1PQ0D2K5 195 aa16.77■□□□□ 0.28
SQSTM1-210ENST00000506042 HES1Q14469 280 aa16.77■□□□□ 0.28
SQSTM1-210ENST00000506042 THNSL2Q86YJ6 484 aa16.77■□□□□ 0.28
SQSTM1-210ENST00000506042 B9D2Q9BPU9 175 aa16.77■□□□□ 0.28
SQSTM1-210ENST00000506042 COMMD4Q9H0A8 199 aa16.77■□□□□ 0.28
SQSTM1-210ENST00000506042 IMPAD1Q9NX62 359 aa16.77■□□□□ 0.28
SQSTM1-210ENST00000506042 HHLA2Q9UM44 414 aa16.77■□□□□ 0.28
SQSTM1-210ENST00000506042 DEGS1O15121 323 aa16.76■□□□□ 0.27
SQSTM1-210ENST00000506042 ISG15P05161 165 aa16.76■□□□□ 0.27
SQSTM1-210ENST00000506042 JUNBP17275 347 aaPredicted RBP16.76■□□□□ 0.27
SQSTM1-210ENST00000506042 NFYBP25208 207 aa16.76■□□□□ 0.27
SQSTM1-210ENST00000506042 LMO1P25800 156 aa16.76■□□□□ 0.27
SQSTM1-210ENST00000506042 C21orf33P30042 268 aaPredicted RBP16.76■□□□□ 0.27
SQSTM1-210ENST00000506042 RAB7AP51149 207 aa16.76■□□□□ 0.27
SQSTM1-210ENST00000506042 EFNB1P98172 346 aa16.76■□□□□ 0.27
SQSTM1-210ENST00000506042 AESQ08117 197 aa16.76■□□□□ 0.27
SQSTM1-210ENST00000506042 OR13C3Q8NGS6 347 aa16.76■□□□□ 0.27
SQSTM1-210ENST00000506042 HAVCR2Q8TDQ0 301 aa16.76■□□□□ 0.27
SQSTM1-210ENST00000506042 OSBPL10Q9BXB5 764 aa16.76■□□□□ 0.27
SQSTM1-210ENST00000506042 BARHL1Q9BZE3 327 aa16.76■□□□□ 0.27
SQSTM1-210ENST00000506042 INPP5EQ9NRR6 644 aa16.76■□□□□ 0.27
SQSTM1-210ENST00000506042 ORC6Q9Y5N6 252 aa16.76■□□□□ 0.27
SQSTM1-210ENST00000506042 A0A087X0M5 115 aa16.75■□□□□ 0.27
SQSTM1-210ENST00000506042 A0A1B0GX30 115 aa16.75■□□□□ 0.27
SQSTM1-210ENST00000506042 RAMP3O60896 148 aa16.75■□□□□ 0.27
SQSTM1-210ENST00000506042 HTR1AP08908 422 aa16.75■□□□□ 0.27
SQSTM1-210ENST00000506042 MYCNOSP40205 109 aa16.75■□□□□ 0.27
SQSTM1-210ENST00000506042 MADCAM1Q13477 382 aa16.75■□□□□ 0.27
SQSTM1-210ENST00000506042 ATP6AP1Q15904 470 aa16.75■□□□□ 0.27
SQSTM1-210ENST00000506042 KLHL22Q53GT1 634 aa16.75■□□□□ 0.27
SQSTM1-210ENST00000506042 KDM4DQ6B0I6 523 aa16.75■□□□□ 0.27
SQSTM1-210ENST00000506042 SSX6Q7RTT6 188 aa16.75■□□□□ 0.27
SQSTM1-210ENST00000506042 LINC00482Q8N8I6 264 aa16.75■□□□□ 0.27
SQSTM1-210ENST00000506042 UTP4Q969X6 686 aaKnown RBP16.75■□□□□ 0.27
SQSTM1-210ENST00000506042 FGGYQ96C11 551 aa16.75■□□□□ 0.27
SQSTM1-210ENST00000506042 DAPL1A0PJW8 107 aa16.74■□□□□ 0.27
SQSTM1-210ENST00000506042 SERPINE3A8MV23 424 aa16.74■□□□□ 0.27
SQSTM1-210ENST00000506042 M0R129 80 aa16.74■□□□□ 0.27
SQSTM1-210ENST00000506042 MAGEB3O15480 346 aa16.74■□□□□ 0.27
SQSTM1-210ENST00000506042 FGF16O43320 207 aa16.74■□□□□ 0.27
SQSTM1-210ENST00000506042 KDM4BO94953 1096 aa16.74■□□□□ 0.27
SQSTM1-210ENST00000506042 HCKP08631 526 aa16.74■□□□□ 0.27
SQSTM1-210ENST00000506042 NHLRC4P0CG21 123 aaPredicted RBP16.74■□□□□ 0.27
SQSTM1-210ENST00000506042 TMEM11P17152 192 aa16.74■□□□□ 0.27
SQSTM1-210ENST00000506042 GLIPR1P48060 266 aa16.74■□□□□ 0.27
SQSTM1-210ENST00000506042 TCTEX1D4Q5JR98 221 aa16.74■□□□□ 0.27
SQSTM1-210ENST00000506042 OR8H3Q8N146 312 aa16.74■□□□□ 0.27
SQSTM1-210ENST00000506042 GABARAPL1Q9H0R8 117 aa16.74■□□□□ 0.27
SQSTM1-210ENST00000506042 ZNF286AQ9HBT8 521 aa16.74■□□□□ 0.27
SQSTM1-210ENST00000506042 IL36RNQ9UBH0 155 aa16.74■□□□□ 0.27
SQSTM1-210ENST00000506042 KBTBD11-OT1A0A1B0GTJ5 212 aa16.73■□□□□ 0.27
SQSTM1-210ENST00000506042 FAM172BPA6NC97 362 aa16.73■□□□□ 0.27
SQSTM1-210ENST00000506042 MMP23AO75900 390 aa16.73■□□□□ 0.27
SQSTM1-210ENST00000506042 MT-ND2P03891 347 aa16.73■□□□□ 0.27
SQSTM1-210ENST00000506042 TMEM225BP0DP42 221 aa16.73■□□□□ 0.27
SQSTM1-210ENST00000506042 MTNR1BP49286 362 aa16.73■□□□□ 0.27
SQSTM1-210ENST00000506042 RASSF2P50749 326 aa16.73■□□□□ 0.27
SQSTM1-210ENST00000506042 CCR9P51686 369 aa16.73■□□□□ 0.27
SQSTM1-210ENST00000506042 RPL23AP62750 156 aaKnown RBP16.73■□□□□ 0.27
SQSTM1-210ENST00000506042 DGCR2P98153 550 aa16.73■□□□□ 0.27
SQSTM1-210ENST00000506042 TP53I3Q53FA7 332 aa16.73■□□□□ 0.27
SQSTM1-210ENST00000506042 SLC16A12Q6ZSM3 486 aa16.73■□□□□ 0.27
SQSTM1-210ENST00000506042 MRPL41Q8IXM3 137 aaKnown RBP16.73■□□□□ 0.27
SQSTM1-210ENST00000506042 PRSS35Q8N3Z0 413 aa16.73■□□□□ 0.27
SQSTM1-210ENST00000506042 OR5D14Q8NGL3 314 aa16.73■□□□□ 0.27
SQSTM1-210ENST00000506042 OR2G2Q8NGZ5 317 aa16.73■□□□□ 0.27
SQSTM1-210ENST00000506042 TRUB1Q8WWH5 349 aaKnown RBP16.73■□□□□ 0.27
SQSTM1-210ENST00000506042 ADAT3Q96EY9 351 aaPredicted RBP16.73■□□□□ 0.27
SQSTM1-210ENST00000506042 WI2-2373I1.2A0A1W2PRP0 233 aa16.72■□□□□ 0.27
SQSTM1-210ENST00000506042 MITFO75030 526 aaPredicted RBP16.72■□□□□ 0.27
SQSTM1-210ENST00000506042 CALCBP10092 127 aa16.72■□□□□ 0.27
SQSTM1-210ENST00000506042 HOXD3P31249 432 aaPredicted RBP16.72■□□□□ 0.27
SQSTM1-210ENST00000506042 GLP1RP43220 463 aa16.72■□□□□ 0.27
SQSTM1-210ENST00000506042 KCNJ3P48549 501 aa16.72■□□□□ 0.27
SQSTM1-210ENST00000506042 THBS3P49746 956 aa16.72■□□□□ 0.27
SQSTM1-210ENST00000506042 SLC35E3Q7Z769 313 aa16.72■□□□□ 0.27
SQSTM1-210ENST00000506042 KLHL30-AS1Q8NEE0 82 aa16.72■□□□□ 0.27
SQSTM1-210ENST00000506042 OR10A7Q8NGE5 316 aa16.72■□□□□ 0.27
SQSTM1-210ENST00000506042 OR10X1Q8NGY0 326 aa16.72■□□□□ 0.27
SQSTM1-210ENST00000506042 RFT1Q96AA3 541 aa16.72■□□□□ 0.27
SQSTM1-210ENST00000506042 MBOAT4Q96T53 435 aa16.72■□□□□ 0.27
SQSTM1-210ENST00000506042 NCOR1P1Q9H4R4 102 aa16.72■□□□□ 0.27
SQSTM1-210ENST00000506042 ING3Q9NXR8 418 aa16.72■□□□□ 0.27
SQSTM1-210ENST00000506042 MEIKINA0A087WXM9 373 aa16.71■□□□□ 0.27
SQSTM1-210ENST00000506042 APOL3O95236 402 aa16.71■□□□□ 0.27
SQSTM1-210ENST00000506042 MRPL28Q13084 256 aaKnown RBP16.71■□□□□ 0.27
SQSTM1-210ENST00000506042 ATXN7L3Q14CW9 347 aaPredicted RBP16.71■□□□□ 0.27
SQSTM1-210ENST00000506042 PAN3Q58A45 887 aaKnown RBP16.71■□□□□ 0.27
SQSTM1-210ENST00000506042 MEDAGQ5VYS4 303 aa16.71■□□□□ 0.27
SQSTM1-210ENST00000506042 FDX2Q6P4F2 183 aa16.71■□□□□ 0.27
SQSTM1-210ENST00000506042 SERPINA12Q8IW75 414 aa16.71■□□□□ 0.27
SQSTM1-210ENST00000506042 OR13C9Q8NGT0 318 aa16.71■□□□□ 0.27
SQSTM1-210ENST00000506042 RIBC2Q9H4K1 309 aa16.71■□□□□ 0.27
SQSTM1-210ENST00000506042 ZCCHC4Q9H5U6 513 aa16.71■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 108.5 ms