RNA–Protein interactions for RNA: ENST00000494080.5

CCDC88B-209, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 4,563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-209ENST00000494080 STARD6P59095 220 aa14.33□□□□□ -0.12
CCDC88B-209ENST00000494080 ZDHHC23Q8IYP9 409 aa14.33□□□□□ -0.12
CCDC88B-209ENST00000494080 RTL8AQ9BWD3 113 aa14.33□□□□□ -0.12
CCDC88B-209ENST00000494080 A0A1W2PQM1 296 aa14.33□□□□□ -0.12
CCDC88B-209ENST00000494080 M0R296 226 aa14.33□□□□□ -0.12
CCDC88B-209ENST00000494080 MDKP21741 143 aaPredicted RBP14.33□□□□□ -0.12
CCDC88B-209ENST00000494080 GAS1P54826 345 aa14.33□□□□□ -0.12
CCDC88B-209ENST00000494080 EIF3IQ13347 325 aaKnown RBP14.33□□□□□ -0.12
CCDC88B-209ENST00000494080 OR2M3Q8NG83 312 aa14.33□□□□□ -0.12
CCDC88B-209ENST00000494080 OR10J5Q8NHC4 309 aa14.33□□□□□ -0.12
CCDC88B-209ENST00000494080 MTCL1Q9Y4B5 1905 aaKnown RBP14.33□□□□□ -0.12
CCDC88B-209ENST00000494080 TRBV5-5A0A0J9YX44 114 aa14.32□□□□□ -0.12
CCDC88B-209ENST00000494080 UPK3AO75631 287 aa14.32□□□□□ -0.12
CCDC88B-209ENST00000494080 CST2P09228 141 aa14.32□□□□□ -0.12
CCDC88B-209ENST00000494080 PNLIPP16233 465 aa14.32□□□□□ -0.12
CCDC88B-209ENST00000494080 RPS4Y1P22090 263 aaKnown RBP14.32□□□□□ -0.12
CCDC88B-209ENST00000494080 GPM6AP51674 278 aa14.32□□□□□ -0.12
CCDC88B-209ENST00000494080 PMP22Q01453 160 aa14.32□□□□□ -0.12
CCDC88B-209ENST00000494080 RAB35Q15286 201 aa14.32□□□□□ -0.12
CCDC88B-209ENST00000494080 TMPRSS7Q7RTY8 843 aa14.32□□□□□ -0.12
CCDC88B-209ENST00000494080 POC1BQ8TC44 478 aa14.32□□□□□ -0.12
CCDC88B-209ENST00000494080 DOK5Q9P104 306 aa14.32□□□□□ -0.12
CCDC88B-209ENST00000494080 G3V3Q6 166 aa14.32□□□□□ -0.12
CCDC88B-209ENST00000494080 CATR1Q13166 79 aa14.32□□□□□ -0.12
CCDC88B-209ENST00000494080 TIPARPQ7Z3E1 657 aaKnown RBP14.32□□□□□ -0.12
CCDC88B-209ENST00000494080 SLC26A10Q8NG04 563 aa14.32□□□□□ -0.12
CCDC88B-209ENST00000494080 DNASE2BQ8WZ79 361 aa14.32□□□□□ -0.12
CCDC88B-209ENST00000494080 BORCS7Q96B45 105 aa14.32□□□□□ -0.12
CCDC88B-209ENST00000494080 FAM103A1Q9BTL3 118 aaKnown RBP14.32□□□□□ -0.12
CCDC88B-209ENST00000494080 METTL1Q9UBP6 276 aaKnown RBP14.32□□□□□ -0.12
CCDC88B-209ENST00000494080 RNF150Q9ULK6 438 aa14.32□□□□□ -0.12
CCDC88B-209ENST00000494080 CARHSP1Q9Y2V2 147 aaKnown RBP14.32□□□□□ -0.12
CCDC88B-209ENST00000494080 TGFBR3LH3BV60 316 aa14.32□□□□□ -0.12
CCDC88B-209ENST00000494080 HMGB3O15347 200 aaKnown RBP14.32□□□□□ -0.12
CCDC88B-209ENST00000494080 CD8AP01732 235 aa14.32□□□□□ -0.12
CCDC88B-209ENST00000494080 KITLGP21583 273 aa14.32□□□□□ -0.12
CCDC88B-209ENST00000494080 MEOX1P50221 254 aa14.32□□□□□ -0.12
CCDC88B-209ENST00000494080 C3AR1Q16581 482 aa14.32□□□□□ -0.12
CCDC88B-209ENST00000494080 ETV3LQ6ZN32 361 aa14.32□□□□□ -0.12
CCDC88B-209ENST00000494080 ZNF574Q6ZN55 896 aaPredicted RBP14.32□□□□□ -0.12
CCDC88B-209ENST00000494080 PNPLA5Q7Z6Z6 429 aaPredicted RBP14.32□□□□□ -0.12
CCDC88B-209ENST00000494080 UBALD1Q8TB05 177 aa14.32□□□□□ -0.12
CCDC88B-209ENST00000494080 NTNG2Q96CW9 530 aa14.32□□□□□ -0.12
CCDC88B-209ENST00000494080 FAAP24Q9BTP7 215 aa14.32□□□□□ -0.12
CCDC88B-209ENST00000494080 PARD6AQ9NPB6 346 aa14.32□□□□□ -0.12
CCDC88B-209ENST00000494080 B3GAT1Q9P2W7 334 aa14.32□□□□□ -0.12
CCDC88B-209ENST00000494080 A0A1W2PPC1 479 aa14.32□□□□□ -0.12
CCDC88B-209ENST00000494080 IL2RAP01589 272 aa14.32□□□□□ -0.12
CCDC88B-209ENST00000494080 HEXAP06865 529 aa14.32□□□□□ -0.12
CCDC88B-209ENST00000494080 DDTP30046 118 aa14.32□□□□□ -0.12
CCDC88B-209ENST00000494080 ADIPOR1Q96A54 375 aa14.32□□□□□ -0.12
CCDC88B-209ENST00000494080 TMED3Q9Y3Q3 217 aa14.32□□□□□ -0.12
CCDC88B-209ENST00000494080 SNRNP200O75643 2136 aaKnown RBP14.31□□□□□ -0.12
CCDC88B-209ENST00000494080 TRGC2P03986 189 aa14.31□□□□□ -0.12
CCDC88B-209ENST00000494080 TRIP6Q15654 476 aaKnown RBP14.31□□□□□ -0.12
CCDC88B-209ENST00000494080 DEFB108BQ8NET1 73 aa14.31□□□□□ -0.12
CCDC88B-209ENST00000494080 DMBX1Q8NFW5 382 aa14.31□□□□□ -0.12
CCDC88B-209ENST00000494080 TRAV14DV4A0A0A6YYC5 116 aa14.31□□□□□ -0.12
CCDC88B-209ENST00000494080 CXorf65A6NEN9 183 aa14.31□□□□□ -0.12
CCDC88B-209ENST00000494080 TIAF1O95411 115 aa14.31□□□□□ -0.12
CCDC88B-209ENST00000494080 SEC11BP0C7V7 166 aa14.31□□□□□ -0.12
CCDC88B-209ENST00000494080 HNF1AP20823 631 aa14.31□□□□□ -0.12
CCDC88B-209ENST00000494080 RPS4XP62701 263 aaKnown RBP14.31□□□□□ -0.12
CCDC88B-209ENST00000494080 ZNF124Q15973 351 aa14.31□□□□□ -0.12
CCDC88B-209ENST00000494080 ZNF766Q5HY98 468 aa14.31□□□□□ -0.12
CCDC88B-209ENST00000494080 SSX7Q7RTT5 188 aa14.31□□□□□ -0.12
CCDC88B-209ENST00000494080 ZNF385AQ96PM9 386 aaKnown RBP14.31□□□□□ -0.12
CCDC88B-209ENST00000494080 NAA60Q9H7X0 242 aa14.31□□□□□ -0.12
CCDC88B-209ENST00000494080 ZDHHC11Q9H8X9 412 aa14.31□□□□□ -0.12
CCDC88B-209ENST00000494080 KLF4O43474 513 aa14.31□□□□□ -0.12
CCDC88B-209ENST00000494080 CLN5O75503 358 aa14.31□□□□□ -0.12
CCDC88B-209ENST00000494080 IL13RA2Q14627 380 aa14.31□□□□□ -0.12
CCDC88B-209ENST00000494080 CATSPERDQ86XM0 798 aa14.31□□□□□ -0.12
CCDC88B-209ENST00000494080 ZNF573Q86YE8 665 aa14.31□□□□□ -0.12
CCDC88B-209ENST00000494080 LURAP1LQ8IV03 231 aa14.31□□□□□ -0.12
CCDC88B-209ENST00000494080 M1APQ8TC57 530 aa14.31□□□□□ -0.12
CCDC88B-209ENST00000494080 MS4A10Q96PG2 267 aa14.31□□□□□ -0.12
CCDC88B-209ENST00000494080 UHRF2Q96PU4 802 aa14.31□□□□□ -0.12
CCDC88B-209ENST00000494080 TREM2Q9NZC2 230 aa14.31□□□□□ -0.12
CCDC88B-209ENST00000494080 IL17BQ9UHF5 180 aa14.31□□□□□ -0.12
CCDC88B-209ENST00000494080 C17orf112F2Z3M2 114 aa14.31□□□□□ -0.12
CCDC88B-209ENST00000494080 ERVS71-1P61550 626 aa14.31□□□□□ -0.12
CCDC88B-209ENST00000494080 ZNF90Q03938 601 aa14.31□□□□□ -0.12
CCDC88B-209ENST00000494080 ABHD3Q8WU67 409 aa14.31□□□□□ -0.12
CCDC88B-209ENST00000494080 BSCL2Q96G97 398 aaPredicted RBP14.31□□□□□ -0.12
CCDC88B-209ENST00000494080 RNF222A6NCQ9 220 aa14.3□□□□□ -0.12
CCDC88B-209ENST00000494080 ST8SIA5O15466 376 aa14.3□□□□□ -0.12
CCDC88B-209ENST00000494080 FUT6P51993 359 aa14.3□□□□□ -0.12
CCDC88B-209ENST00000494080 LIMK1P53667 647 aa14.3□□□□□ -0.12
CCDC88B-209ENST00000494080 SPSB2Q99619 263 aa14.3□□□□□ -0.12
CCDC88B-209ENST00000494080 TERTO14746 1132 aaKnown RBP14.3□□□□□ -0.12
CCDC88B-209ENST00000494080 DXOO77932 396 aaKnown RBP14.3□□□□□ -0.12
CCDC88B-209ENST00000494080 RAB4AP20338 218 aa14.3□□□□□ -0.12
CCDC88B-209ENST00000494080 NTF3P20783 257 aa14.3□□□□□ -0.12
CCDC88B-209ENST00000494080 RBPJQ06330 500 aa14.3□□□□□ -0.12
CCDC88B-209ENST00000494080 ZNF385CQ66K41 422 aaPredicted RBP14.3□□□□□ -0.12
CCDC88B-209ENST00000494080 FAM58AQ8N1B3 248 aa14.3□□□□□ -0.12
CCDC88B-209ENST00000494080 SAP25Q8TEE9 199 aa14.3□□□□□ -0.12
CCDC88B-209ENST00000494080 APOBEC3DQ96AK3 386 aaPredicted RBP14.3□□□□□ -0.12
CCDC88B-209ENST00000494080 SPSB1Q96BD6 273 aa14.3□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 53 ms