RNA–Protein interactions for RNA: ENST00000493919.5

BRCA1-222, Transcript of BRCA1, DNA repair associated, human

TSL 2

Gene BRCA1, Length 1,948 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
BRCA1-222	ENST00000493919	ATG4D	Q86TL0	474 aa	Predicted RBP	10.09	□□□□□ -0.79
BRCA1-222	ENST00000493919	NIT1	Q86X76	327 aa		10.09	□□□□□ -0.79
BRCA1-222	ENST00000493919	OR6V1	Q8N148	313 aa		10.09	□□□□□ -0.79
BRCA1-222	ENST00000493919	TNFAIP8L1	Q8WVP5	186 aa		10.09	□□□□□ -0.79
BRCA1-222	ENST00000493919	PIK3IP1	Q96FE7	263 aa		10.09	□□□□□ -0.79
BRCA1-222	ENST00000493919	TRIB1	Q96RU8	372 aa		10.09	□□□□□ -0.79
BRCA1-222	ENST00000493919	ASPDH	A6ND91	283 aa		10.09	□□□□□ -0.79
BRCA1-222	ENST00000493919	FAM166B	A8MTA8	275 aa		10.09	□□□□□ -0.79
BRCA1-222	ENST00000493919	RAB32	Q13637	225 aa		10.09	□□□□□ -0.79
BRCA1-222	ENST00000493919	COA6	Q5JTJ3	125 aa	Known RBP	10.09	□□□□□ -0.79
BRCA1-222	ENST00000493919	OR2T2	Q6IF00	324 aa		10.09	□□□□□ -0.79
BRCA1-222	ENST00000493919	WDR82	Q6UXN9	313 aa		10.09	□□□□□ -0.79
BRCA1-222	ENST00000493919	SLC16A9	Q7RTY1	509 aa		10.09	□□□□□ -0.79
BRCA1-222	ENST00000493919	OR6N1	Q8NGY5	312 aa		10.09	□□□□□ -0.79
BRCA1-222	ENST00000493919	OR5W2	Q8NH69	310 aa		10.09	□□□□□ -0.79
BRCA1-222	ENST00000493919	SPRYD4	Q8WW59	207 aa	Predicted RBP	10.09	□□□□□ -0.79
BRCA1-222	ENST00000493919	SLC35A4	Q96G79	324 aa		10.09	□□□□□ -0.79
BRCA1-222	ENST00000493919	ZNF587	Q96SQ5	575 aa	Predicted RBP	10.09	□□□□□ -0.79
BRCA1-222	ENST00000493919	PITX2	Q99697	317 aa		10.09	□□□□□ -0.79
BRCA1-222	ENST00000493919	FAM173A	Q9BQD7	235 aa		10.09	□□□□□ -0.79
BRCA1-222	ENST00000493919	OR51I1	Q9H343	314 aa		10.09	□□□□□ -0.79
BRCA1-222	ENST00000493919	TMEM27	Q9HBJ8	222 aa		10.09	□□□□□ -0.79
BRCA1-222	ENST00000493919	SH2D2A	Q9NP31	389 aa		10.09	□□□□□ -0.79
BRCA1-222	ENST00000493919	OR6C3	Q9NZP0	311 aa		10.09	□□□□□ -0.79
BRCA1-222	ENST00000493919	PLEKHB1	Q9UF11	243 aa	Predicted RBP	10.09	□□□□□ -0.79
BRCA1-222	ENST00000493919	HHLA2	Q9UM44	414 aa		10.09	□□□□□ -0.79
BRCA1-222	ENST00000493919	SVIL	O95425	2214 aa		10.08	□□□□□ -0.8
BRCA1-222	ENST00000493919	KANTR	A0A1W2PQU2	76 aa		10.08	□□□□□ -0.8
BRCA1-222	ENST00000493919	C2orf72	A6NCS6	295 aa		10.08	□□□□□ -0.8
BRCA1-222	ENST00000493919	OR6C6	A6NF89	314 aa		10.08	□□□□□ -0.8
BRCA1-222	ENST00000493919	SNRPGP15	A8MWD9	76 aa		10.08	□□□□□ -0.8
BRCA1-222	ENST00000493919	SHISA8	B8ZZ34	492 aa		10.08	□□□□□ -0.8
BRCA1-222	ENST00000493919		E5RGE8	158 aa		10.08	□□□□□ -0.8
BRCA1-222	ENST00000493919	S1PR2	O95136	353 aa		10.08	□□□□□ -0.8
BRCA1-222	ENST00000493919	IGKV1D-16	P01601	117 aa		10.08	□□□□□ -0.8
BRCA1-222	ENST00000493919	SEMG1	P04279	462 aa		10.08	□□□□□ -0.8
BRCA1-222	ENST00000493919	SMIM17	P0DL12	118 aa		10.08	□□□□□ -0.8
BRCA1-222	ENST00000493919	ESD	P10768	282 aa		10.08	□□□□□ -0.8
BRCA1-222	ENST00000493919	HTR1E	P28566	365 aa		10.08	□□□□□ -0.8
BRCA1-222	ENST00000493919	SRD5A2	P31213	254 aa		10.08	□□□□□ -0.8
BRCA1-222	ENST00000493919	TFPI2	P48307	235 aa		10.08	□□□□□ -0.8
BRCA1-222	ENST00000493919	CAV2	P51636	162 aa		10.08	□□□□□ -0.8
BRCA1-222	ENST00000493919	IGFBP7	Q16270	282 aa		10.08	□□□□□ -0.8
BRCA1-222	ENST00000493919	C4orf17	Q53FE4	359 aa		10.08	□□□□□ -0.8
BRCA1-222	ENST00000493919	DCST2	Q5T1A1	773 aa		10.08	□□□□□ -0.8
BRCA1-222	ENST00000493919	TMEM42	Q69YG0	159 aa		10.08	□□□□□ -0.8
BRCA1-222	ENST00000493919	OR52L1	Q8NGH7	329 aa		10.08	□□□□□ -0.8
BRCA1-222	ENST00000493919	DYRK2	Q92630	601 aa		10.08	□□□□□ -0.8
BRCA1-222	ENST00000493919	RAB8B	Q92930	207 aa		10.08	□□□□□ -0.8
BRCA1-222	ENST00000493919	NEURL3	Q96EH8	262 aa		10.08	□□□□□ -0.8
BRCA1-222	ENST00000493919	TTTY12	Q9BZ98	90 aa		10.08	□□□□□ -0.8
BRCA1-222	ENST00000493919	FLRT3	Q9NZU0	649 aa		10.08	□□□□□ -0.8
BRCA1-222	ENST00000493919	P2RX2	Q9UBL9	471 aa		10.08	□□□□□ -0.8
BRCA1-222	ENST00000493919	KCNE5	Q9UJ90	142 aa		10.08	□□□□□ -0.8
BRCA1-222	ENST00000493919	KCNE3	Q9Y6H6	103 aa		10.08	□□□□□ -0.8
BRCA1-222	ENST00000493919	OR2F2	O95006	317 aa		10.07	□□□□□ -0.8
BRCA1-222	ENST00000493919	OR12D1	P0DN82	309 aa		10.07	□□□□□ -0.8
BRCA1-222	ENST00000493919	AZU1	P20160	251 aa		10.07	□□□□□ -0.8
BRCA1-222	ENST00000493919	GDF1	P27539	372 aa		10.07	□□□□□ -0.8
BRCA1-222	ENST00000493919	SULT1A1	P50225	295 aa		10.07	□□□□□ -0.8
BRCA1-222	ENST00000493919	SNU13	P55769	128 aa	Known RBP	10.07	□□□□□ -0.8
BRCA1-222	ENST00000493919	UCP2	P55851	309 aa		10.07	□□□□□ -0.8
BRCA1-222	ENST00000493919	S100A10	P60903	97 aa		10.07	□□□□□ -0.8
BRCA1-222	ENST00000493919	ST3GAL3	Q11203	375 aa		10.07	□□□□□ -0.8
BRCA1-222	ENST00000493919	OR2F1	Q13607	317 aa		10.07	□□□□□ -0.8
BRCA1-222	ENST00000493919	DOC2B	Q14184	412 aa		10.07	□□□□□ -0.8
BRCA1-222	ENST00000493919	ACSM3	Q53FZ2	586 aa		10.07	□□□□□ -0.8
BRCA1-222	ENST00000493919	AWAT1	Q58HT5	328 aa		10.07	□□□□□ -0.8
BRCA1-222	ENST00000493919	PAGE3	Q5JUK9	113 aa		10.07	□□□□□ -0.8
BRCA1-222	ENST00000493919	RPL22L1	Q6P5R6	122 aa	Known RBP	10.07	□□□□□ -0.8
BRCA1-222	ENST00000493919	ZAR1	Q86SH2	424 aa		10.07	□□□□□ -0.8
BRCA1-222	ENST00000493919	FADS6	Q8N9I5	356 aa		10.07	□□□□□ -0.8
BRCA1-222	ENST00000493919	ZFP62	Q8NB50	900 aa	Predicted RBP	10.07	□□□□□ -0.8
BRCA1-222	ENST00000493919	GPR148	Q8TDV2	347 aa		10.07	□□□□□ -0.8
BRCA1-222	ENST00000493919	CFHR4	Q92496	578 aa		10.07	□□□□□ -0.8
BRCA1-222	ENST00000493919	HOXB13	Q92826	284 aa	Predicted RBP	10.07	□□□□□ -0.8
BRCA1-222	ENST00000493919	WNT2B	Q93097	391 aa		10.07	□□□□□ -0.8
BRCA1-222	ENST00000493919	ASCL2	Q99929	193 aa		10.07	□□□□□ -0.8
BRCA1-222	ENST00000493919	RBKS	Q9H477	322 aa		10.07	□□□□□ -0.8
BRCA1-222	ENST00000493919	SPANXA1	Q9NS26	97 aa		10.07	□□□□□ -0.8
BRCA1-222	ENST00000493919	SS18L2	Q9UHA2	77 aa		10.07	□□□□□ -0.8
BRCA1-222	ENST00000493919	NAT8	Q9UHE5	227 aa		10.07	□□□□□ -0.8
BRCA1-222	ENST00000493919	BOK	Q9UMX3	212 aa	Predicted RBP	10.07	□□□□□ -0.8
BRCA1-222	ENST00000493919	PSG8	Q9UQ74	426 aa		10.07	□□□□□ -0.8
BRCA1-222	ENST00000493919	SHANK1	Q9Y566	2161 aa		10.07	□□□□□ -0.8
BRCA1-222	ENST00000493919	MYO18B	Q8IUG5	2567 aa		10.07	□□□□□ -0.8
BRCA1-222	ENST00000493919	RBM14-RBM4	A0A0A0MSL8	147 aa	Known RBP	10.07	□□□□□ -0.8
BRCA1-222	ENST00000493919	OR5B21	A6NL26	309 aa		10.07	□□□□□ -0.8
BRCA1-222	ENST00000493919	FAM183A	A6NL82	134 aa		10.07	□□□□□ -0.8
BRCA1-222	ENST00000493919		H0Y980	276 aa		10.07	□□□□□ -0.8
BRCA1-222	ENST00000493919	BCL2L11	O43521	198 aa		10.07	□□□□□ -0.8
BRCA1-222	ENST00000493919	ZNF205	O95201	554 aa		10.07	□□□□□ -0.8
BRCA1-222	ENST00000493919	UTS2	O95399	124 aa		10.07	□□□□□ -0.8
BRCA1-222	ENST00000493919	TMEM225B	P0DP42	221 aa		10.07	□□□□□ -0.8
BRCA1-222	ENST00000493919	OSM	P13725	252 aa		10.07	□□□□□ -0.8
BRCA1-222	ENST00000493919	ELAVL4	P26378	380 aa	Known RBP	10.07	□□□□□ -0.8
BRCA1-222	ENST00000493919	CHAT	P28329	748 aa		10.07	□□□□□ -0.8
BRCA1-222	ENST00000493919	ACVR1B	P36896	505 aa		10.07	□□□□□ -0.8
BRCA1-222	ENST00000493919	POLR2H	P52434	150 aa	Known RBP	10.07	□□□□□ -0.8
BRCA1-222	ENST00000493919	AKR1C1	Q04828	323 aa		10.07	□□□□□ -0.8

Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms