RNA–Protein interactions for RNA: ENST00000489816.5

BRD9-208, Transcript of bromodomain containing 9, human

TSL 1 (best)

Gene BRD9, Length 3,170 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
BRD9-208	ENST00000489816	MTCH1	Q9NZJ7	389 aa		13.51	□□□□□ -0.25
BRD9-208	ENST00000489816	PRSS50	Q9UI38	385 aa		13.51	□□□□□ -0.25
BRD9-208	ENST00000489816	PTPRZ1	P23471	2315 aa	Predicted RBP	13.51	□□□□□ -0.25
BRD9-208	ENST00000489816	TMEM265	A0A087WTH1	108 aa		13.51	□□□□□ -0.25
BRD9-208	ENST00000489816	NKX2-6	A6NCS4	301 aa		13.51	□□□□□ -0.25
BRD9-208	ENST00000489816	FAM24A	A6NFZ4	105 aa		13.51	□□□□□ -0.25
BRD9-208	ENST00000489816	ARGFX	A6NJG6	315 aa		13.51	□□□□□ -0.25
BRD9-208	ENST00000489816	RNASEK-C17orf49	H0YIS7	233 aa		13.51	□□□□□ -0.25
BRD9-208	ENST00000489816	PPY	P01298	95 aa		13.51	□□□□□ -0.25
BRD9-208	ENST00000489816	SFTA3	P0C7M3	94 aa		13.51	□□□□□ -0.25
BRD9-208	ENST00000489816	DAO	P14920	347 aa		13.51	□□□□□ -0.25
BRD9-208	ENST00000489816	PVALB	P20472	110 aa	Predicted RBP	13.51	□□□□□ -0.25
BRD9-208	ENST00000489816	SURF2	Q15527	256 aa	Predicted RBP	13.51	□□□□□ -0.25
BRD9-208	ENST00000489816	TMEM42	Q69YG0	159 aa		13.51	□□□□□ -0.25
BRD9-208	ENST00000489816	FAM122C	Q6P4D5	195 aa		13.51	□□□□□ -0.25
BRD9-208	ENST00000489816	HPSE2	Q8WWQ2	592 aa		13.51	□□□□□ -0.25
BRD9-208	ENST00000489816	C10orf35	Q96D05	121 aa		13.51	□□□□□ -0.25
BRD9-208	ENST00000489816	HOXA6	P31267	233 aa		13.51	□□□□□ -0.25
BRD9-208	ENST00000489816	RPL35	P42766	123 aa	Known RBP	13.51	□□□□□ -0.25
BRD9-208	ENST00000489816	LHX2	P50458	406 aa		13.51	□□□□□ -0.25
BRD9-208	ENST00000489816	DHRS11	Q6UWP2	260 aa		13.51	□□□□□ -0.25
BRD9-208	ENST00000489816	ZNF100	Q8IYN0	542 aa		13.51	□□□□□ -0.25
BRD9-208	ENST00000489816	TMEM251	Q8N6I4	163 aa		13.51	□□□□□ -0.25
BRD9-208	ENST00000489816	TTTY12	Q9BZ98	90 aa		13.51	□□□□□ -0.25
BRD9-208	ENST00000489816	MLX	Q9UH92	298 aa		13.51	□□□□□ -0.25
BRD9-208	ENST00000489816	ZDHHC8	Q9ULC8	765 aa		13.51	□□□□□ -0.25
BRD9-208	ENST00000489816	UBE2J1	Q9Y385	318 aa	Predicted RBP	13.51	□□□□□ -0.25
BRD9-208	ENST00000489816	LIPG	Q9Y5X9	500 aa		13.51	□□□□□ -0.25
BRD9-208	ENST00000489816	DOCK11	Q5JSL3	2073 aa		13.5	□□□□□ -0.25
BRD9-208	ENST00000489816	SMG1	Q96Q15	3661 aa	Known RBP	13.5	□□□□□ -0.25
BRD9-208	ENST00000489816	IGKV1D-13	A0A0B4J2D9	117 aa		13.5	□□□□□ -0.25
BRD9-208	ENST00000489816	IGKV1-13	P0DP09	117 aa		13.5	□□□□□ -0.25
BRD9-208	ENST00000489816	CEBPG	P53567	150 aa		13.5	□□□□□ -0.25
BRD9-208	ENST00000489816	NRIP2	Q9BQI9	281 aa		13.5	□□□□□ -0.25
BRD9-208	ENST00000489816	ZNF703	Q9H7S9	590 aa	Predicted RBP	13.5	□□□□□ -0.25
BRD9-208	ENST00000489816	HSF4	Q9ULV5	492 aa		13.5	□□□□□ -0.25
BRD9-208	ENST00000489816	EDAR	Q9UNE0	448 aa		13.5	□□□□□ -0.25
BRD9-208	ENST00000489816	CYC1	P08574	325 aa		13.5	□□□□□ -0.25
BRD9-208	ENST00000489816	PPA1	Q15181	289 aa		13.5	□□□□□ -0.25
BRD9-208	ENST00000489816	CXorf66	Q5JRM2	361 aa	Predicted RBP	13.5	□□□□□ -0.25
BRD9-208	ENST00000489816	OR2T2	Q6IF00	324 aa		13.5	□□□□□ -0.25
BRD9-208	ENST00000489816	DMXL2	Q8TDJ6	3036 aa		13.5	□□□□□ -0.25
BRD9-208	ENST00000489816		H3BP45	60 aa		13.49	□□□□□ -0.25
BRD9-208	ENST00000489816	CST7	O76096	145 aa		13.49	□□□□□ -0.25
BRD9-208	ENST00000489816	CST4	P01036	141 aa		13.49	□□□□□ -0.25
BRD9-208	ENST00000489816	CTRB1	P17538	263 aa		13.49	□□□□□ -0.25
BRD9-208	ENST00000489816	PRKACA	P17612	351 aa		13.49	□□□□□ -0.25
BRD9-208	ENST00000489816	EPHA1	P21709	976 aa		13.49	□□□□□ -0.25
BRD9-208	ENST00000489816	CLDN18	P56856	261 aa		13.49	□□□□□ -0.25
BRD9-208	ENST00000489816	HNF4G	Q14541	408 aa		13.49	□□□□□ -0.25
BRD9-208	ENST00000489816	OR8B8	Q15620	311 aa		13.49	□□□□□ -0.25
BRD9-208	ENST00000489816	MIDN	Q504T8	468 aa		13.49	□□□□□ -0.25
BRD9-208	ENST00000489816	FAM76B	Q5HYJ3	339 aa		13.49	□□□□□ -0.25
BRD9-208	ENST00000489816	DCAF10	Q5QP82	559 aa		13.49	□□□□□ -0.25
BRD9-208	ENST00000489816	CTRB2	Q6GPI1	263 aa		13.49	□□□□□ -0.25
BRD9-208	ENST00000489816	C20orf204	Q6ZNR8	217 aa		13.49	□□□□□ -0.25
BRD9-208	ENST00000489816	LIAT1	Q6ZQX7	453 aa		13.49	□□□□□ -0.25
BRD9-208	ENST00000489816	MSI2	Q96DH6	328 aa	Known RBP	13.49	□□□□□ -0.25
BRD9-208	ENST00000489816	DNAJB11	Q9UBS4	358 aa		13.49	□□□□□ -0.25
BRD9-208	ENST00000489816	PURG	Q9UJV8	347 aa	Known RBP	13.49	□□□□□ -0.25
BRD9-208	ENST00000489816		B4E171	279 aa		13.49	□□□□□ -0.25
BRD9-208	ENST00000489816		H7C2Y5	167 aa		13.49	□□□□□ -0.25
BRD9-208	ENST00000489816	RRP8	O43159	456 aa	Known RBP	13.49	□□□□□ -0.25
BRD9-208	ENST00000489816	LYL1	P12980	280 aa		13.49	□□□□□ -0.25
BRD9-208	ENST00000489816	GNRHR	P30968	328 aa		13.49	□□□□□ -0.25
BRD9-208	ENST00000489816	TSPAN7	P41732	249 aa		13.49	□□□□□ -0.25
BRD9-208	ENST00000489816	P4HA3	Q7Z4N8	544 aa		13.49	□□□□□ -0.25
BRD9-208	ENST00000489816	GAPT	Q8N292	157 aa		13.49	□□□□□ -0.25
BRD9-208	ENST00000489816	IL22RA1	Q8N6P7	574 aa		13.49	□□□□□ -0.25
BRD9-208	ENST00000489816	NTNG2	Q96CW9	530 aa		13.49	□□□□□ -0.25
BRD9-208	ENST00000489816	ABHD14A	Q9BUJ0	271 aa		13.49	□□□□□ -0.25
BRD9-208	ENST00000489816	STRADB	Q9C0K7	418 aa		13.49	□□□□□ -0.25
BRD9-208	ENST00000489816	EIF5A2	Q9GZV4	153 aa	Known RBP	13.49	□□□□□ -0.25
BRD9-208	ENST00000489816	CCL28	Q9NRJ3	127 aa		13.49	□□□□□ -0.25
BRD9-208	ENST00000489816	RHBDL1	O75783	438 aa		13.48	□□□□□ -0.25
BRD9-208	ENST00000489816	WISP2	O76076	250 aa		13.48	□□□□□ -0.25
BRD9-208	ENST00000489816	SYNGR4	O95473	234 aa		13.48	□□□□□ -0.25
BRD9-208	ENST00000489816	CA6	P23280	308 aa		13.48	□□□□□ -0.25
BRD9-208	ENST00000489816	RTL6	Q6ICC9	239 aa		13.48	□□□□□ -0.25
BRD9-208	ENST00000489816	OR51H1	Q8NH63	302 aa		13.48	□□□□□ -0.25
BRD9-208	ENST00000489816	TAAR9	Q96RI9	348 aa		13.48	□□□□□ -0.25
BRD9-208	ENST00000489816	TERT	O14746	1132 aa	Known RBP	13.48	□□□□□ -0.25
BRD9-208	ENST00000489816	SSSCA1	O60232	199 aa		13.48	□□□□□ -0.25
BRD9-208	ENST00000489816	DTYMK	P23919	212 aa		13.48	□□□□□ -0.25
BRD9-208	ENST00000489816	PMP22	Q01453	160 aa		13.48	□□□□□ -0.25
BRD9-208	ENST00000489816	RIPPLY2	Q5TAB7	128 aa		13.48	□□□□□ -0.25
BRD9-208	ENST00000489816	ALKBH2	Q6NS38	261 aa		13.48	□□□□□ -0.25
BRD9-208	ENST00000489816	UQCC3	Q6UW78	93 aa		13.48	□□□□□ -0.25
BRD9-208	ENST00000489816	ZNF818P	Q6ZRF7	136 aa		13.48	□□□□□ -0.25
BRD9-208	ENST00000489816		Q6ZSR3	168 aa		13.48	□□□□□ -0.25
BRD9-208	ENST00000489816	PNPLA5	Q7Z6Z6	429 aa	Predicted RBP	13.48	□□□□□ -0.25
BRD9-208	ENST00000489816	TBC1D26	Q86UD7	250 aa		13.48	□□□□□ -0.25
BRD9-208	ENST00000489816	MCEMP1	Q8IX19	187 aa		13.48	□□□□□ -0.25
BRD9-208	ENST00000489816	GCNT2	Q8N0V5	402 aa		13.48	□□□□□ -0.25
BRD9-208	ENST00000489816	APH1A	Q96BI3	265 aa		13.48	□□□□□ -0.25
BRD9-208	ENST00000489816	FBXO7	Q9Y3I1	522 aa		13.48	□□□□□ -0.25
BRD9-208	ENST00000489816	USF3	Q68DE3	2245 aa		13.48	□□□□□ -0.25
BRD9-208	ENST00000489816	TNRC6B	Q9UPQ9	1833 aa	Known RBP	13.48	□□□□□ -0.25
BRD9-208	ENST00000489816	C3orf85	A0A1B0GTC6	90 aa		13.48	□□□□□ -0.25
BRD9-208	ENST00000489816	DNPH1	O43598	174 aa		13.48	□□□□□ -0.25

Retrieved 100 of 20,778 RNA–protein pairs in 56.5 ms