RNA–Protein interactions for RNA: ENST00000487938.5

VIM-206, Transcript of vimentin, humanhuman

TSL 5

Gene VIM, Length 2,272 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-206ENST00000487938 TMEM105Q8N8V8 129 aa15.45■□□□□ 0.06
VIM-206ENST00000487938 CCDC71LQ8N9Z2 235 aa15.45■□□□□ 0.06
VIM-206ENST00000487938 CALHM2Q9HA72 323 aa15.45■□□□□ 0.06
VIM-206ENST00000487938 IL36RNQ9UBH0 155 aa15.45■□□□□ 0.06
VIM-206ENST00000487938 CACFD1Q9UGQ2 172 aa15.45■□□□□ 0.06
VIM-206ENST00000487938 LOXL2Q9Y4K0 774 aa15.45■□□□□ 0.06
VIM-206ENST00000487938 C5orf49A4QMS7 147 aa15.44■□□□□ 0.06
VIM-206ENST00000487938 PRH1P02810 166 aa15.44■□□□□ 0.06
VIM-206ENST00000487938 SCTP09683 121 aa15.44■□□□□ 0.06
VIM-206ENST00000487938 SEC11BP0C7V7 166 aa15.44■□□□□ 0.06
VIM-206ENST00000487938 PRDX4Q13162 271 aa15.44■□□□□ 0.06
VIM-206ENST00000487938 IL13RA2Q14627 380 aa15.44■□□□□ 0.06
VIM-206ENST00000487938 IQCF2Q8IXL9 164 aa15.44■□□□□ 0.06
VIM-206ENST00000487938 DEFB123Q8N688 67 aa15.44■□□□□ 0.06
VIM-206ENST00000487938 GINS3Q9BRX5 216 aa15.44■□□□□ 0.06
VIM-206ENST00000487938 HES7Q9BYE0 225 aa15.44■□□□□ 0.06
VIM-206ENST00000487938 PRRG4Q9BZD6 226 aa15.44■□□□□ 0.06
VIM-206ENST00000487938 PRDM14Q9GZV8 571 aa15.44■□□□□ 0.06
VIM-206ENST00000487938 RFNGQ9Y644 331 aa15.44■□□□□ 0.06
VIM-206ENST00000487938 B4E171 279 aa15.43■□□□□ 0.06
VIM-206ENST00000487938 RPL36A-HNRNPH2H7BZ11 118 aa15.43■□□□□ 0.06
VIM-206ENST00000487938 SERPINA7P05543 415 aa15.43■□□□□ 0.06
VIM-206ENST00000487938 HEXAP06865 529 aa15.43■□□□□ 0.06
VIM-206ENST00000487938 TSPAN7P41732 249 aa15.43■□□□□ 0.06
VIM-206ENST00000487938 AVPI1Q5T686 147 aa15.43■□□□□ 0.06
VIM-206ENST00000487938 TUSC5Q8IXB3 177 aa15.43■□□□□ 0.06
VIM-206ENST00000487938 OR4D5Q8NGN0 318 aa15.43■□□□□ 0.06
VIM-206ENST00000487938 EIF5A2Q9GZV4 153 aaKnown RBP15.43■□□□□ 0.06
VIM-206ENST00000487938 TMED3Q9Y3Q3 217 aa15.43■□□□□ 0.06
VIM-206ENST00000487938 POMT1Q9Y6A1 747 aa15.43■□□□□ 0.06
VIM-206ENST00000487938 ZNF503-AS2A6NEH8 195 aa15.43■□□□□ 0.06
VIM-206ENST00000487938 FAM24AA6NFZ4 105 aa15.43■□□□□ 0.06
VIM-206ENST00000487938 COLCA2A8K830 154 aa15.43■□□□□ 0.06
VIM-206ENST00000487938 GUK1Q16774 197 aa15.43■□□□□ 0.06
VIM-206ENST00000487938 DPPA2Q7Z7J5 298 aa15.43■□□□□ 0.06
VIM-206ENST00000487938 TBC1D26Q86UD7 250 aa15.43■□□□□ 0.06
VIM-206ENST00000487938 HPSE2Q8WWQ2 592 aa15.43■□□□□ 0.06
VIM-206ENST00000487938 TECTBQ96PL2 329 aa15.43■□□□□ 0.06
VIM-206ENST00000487938 SIGLEC12Q96PQ1 595 aa15.43■□□□□ 0.06
VIM-206ENST00000487938 USB1Q9BQ65 265 aaKnown RBP15.43■□□□□ 0.06
VIM-206ENST00000487938 UBE2J1Q9Y385 318 aaPredicted RBP15.43■□□□□ 0.06
VIM-206ENST00000487938 PQLC2LA1A4F0 135 aa15.42■□□□□ 0.06
VIM-206ENST00000487938 KCNJ3P48549 501 aa15.42■□□□□ 0.06
VIM-206ENST00000487938 GNMTQ14749 295 aa15.42■□□□□ 0.06
VIM-206ENST00000487938 TCEAL6Q6IPX3 200 aa15.42■□□□□ 0.06
VIM-206ENST00000487938 COLCA1Q6ZS62 124 aa15.42■□□□□ 0.06
VIM-206ENST00000487938 TCEAL3Q969E4 200 aa15.42■□□□□ 0.06
VIM-206ENST00000487938 CLCC1Q96S66 551 aa15.42■□□□□ 0.06
VIM-206ENST00000487938 REPIN1Q9BWE0 567 aaKnown RBP15.42■□□□□ 0.06
VIM-206ENST00000487938 ESRP2Q9H6T0 727 aaKnown RBP15.42■□□□□ 0.06
VIM-206ENST00000487938 RPS10P5Q9NQ39 176 aa15.42■□□□□ 0.06
VIM-206ENST00000487938 C19orf12Q9NSK7 152 aa15.42■□□□□ 0.06
VIM-206ENST00000487938 LUZP4Q9P127 313 aa15.42■□□□□ 0.06
VIM-206ENST00000487938 MRPS18CQ9Y3D5 142 aaKnown RBP15.42■□□□□ 0.06
VIM-206ENST00000487938 C3orf80F5H4A9 247 aa15.42■□□□□ 0.06
VIM-206ENST00000487938 POLR2GP62487 172 aaKnown RBP eCLIP15.42■□□□□ 0.06
VIM-206ENST00000487938 TSC22D1Q15714 1073 aa15.42■□□□□ 0.06
VIM-206ENST00000487938 SCRT1Q9BWW7 348 aa15.42■□□□□ 0.06
VIM-206ENST00000487938 MAGT1Q9H0U3 335 aa15.42■□□□□ 0.06
VIM-206ENST00000487938 KLF2Q9Y5W3 355 aaPredicted RBP15.42■□□□□ 0.06
VIM-206ENST00000487938 TRDCB7Z8K6 153 aa15.41■□□□□ 0.06
VIM-206ENST00000487938 OMGP23515 440 aa15.41■□□□□ 0.06
VIM-206ENST00000487938 EWSR1Q01844 656 aaKnown RBP eCLIP15.41■□□□□ 0.06
VIM-206ENST00000487938 CLINT1Q14677 625 aa15.41■□□□□ 0.06
VIM-206ENST00000487938 TMEM182Q6ZP80 229 aaPredicted RBP15.41■□□□□ 0.06
VIM-206ENST00000487938 ZNF818PQ6ZRF7 136 aa15.41■□□□□ 0.06
VIM-206ENST00000487938 ZNF695Q8IW36 515 aa15.41■□□□□ 0.06
VIM-206ENST00000487938 NEK7Q8TDX7 302 aa15.41■□□□□ 0.06
VIM-206ENST00000487938 TMEM45BQ96B21 275 aa15.41■□□□□ 0.06
VIM-206ENST00000487938 C14orf79Q96F83 325 aa15.41■□□□□ 0.06
VIM-206ENST00000487938 C20orf24Q9BUV8 137 aa15.41■□□□□ 0.06
VIM-206ENST00000487938 TMEM222Q9H0R3 208 aa15.41■□□□□ 0.06
VIM-206ENST00000487938 Q9N2K0 584 aa15.41■□□□□ 0.06
VIM-206ENST00000487938 PLSCR2Q9NRY7 297 aa15.41■□□□□ 0.06
VIM-206ENST00000487938 MTCH1Q9NZJ7 389 aa15.41■□□□□ 0.06
VIM-206ENST00000487938 BOKQ9UMX3 212 aaPredicted RBP15.41■□□□□ 0.06
VIM-206ENST00000487938 FAM166BA8MTA8 275 aa15.41■□□□□ 0.06
VIM-206ENST00000487938 ZNF732B4DXR9 585 aa15.41■□□□□ 0.06
VIM-206ENST00000487938 SLC33A1O00400 549 aaPredicted RBP15.41■□□□□ 0.06
VIM-206ENST00000487938 NXPH3O95157 252 aa15.41■□□□□ 0.06
VIM-206ENST00000487938 NGFP01138 241 aa15.41■□□□□ 0.06
VIM-206ENST00000487938 SNRNP70P08621 437 aaKnown RBP15.41■□□□□ 0.06
VIM-206ENST00000487938 LHX2P50458 406 aa15.41■□□□□ 0.06
VIM-206ENST00000487938 GAPTQ8N292 157 aa15.41■□□□□ 0.06
VIM-206ENST00000487938 OR2M7Q8NG81 312 aa15.41■□□□□ 0.06
VIM-206ENST00000487938 SPACA1Q9HBV2 294 aa15.41■□□□□ 0.06
VIM-206ENST00000487938 SMCO4Q9NRQ5 59 aa15.41■□□□□ 0.06
VIM-206ENST00000487938 KPTNQ9Y664 436 aa15.41■□□□□ 0.06
VIM-206ENST00000487938 IGKV1D-13A0A0B4J2D9 117 aa15.4■□□□□ 0.06
VIM-206ENST00000487938 HSD17B6O14756 317 aa15.4■□□□□ 0.06
VIM-206ENST00000487938 IGKV1-13P0DP09 117 aa15.4■□□□□ 0.06
VIM-206ENST00000487938 MRPL21Q7Z2W9 205 aaKnown RBP15.4■□□□□ 0.06
VIM-206ENST00000487938 ZNF565Q8N9K5 539 aa15.4■□□□□ 0.06
VIM-206ENST00000487938 BOD1Q96IK1 185 aa15.4■□□□□ 0.06
VIM-206ENST00000487938 BIN3Q9NQY0 253 aa15.4■□□□□ 0.06
VIM-206ENST00000487938 NEURL1O76050 574 aa15.4■□□□□ 0.06
VIM-206ENST00000487938 TK1P04183 234 aa15.4■□□□□ 0.06
VIM-206ENST00000487938 DAOP14920 347 aa15.4■□□□□ 0.06
VIM-206ENST00000487938 HOXA1P49639 335 aaPredicted RBP15.4■□□□□ 0.06
VIM-206ENST00000487938 HERPUD1Q15011 391 aa15.4■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms