RNA–Protein interactions for RNA: ENST00000475218.2

UPF3A-204, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 1 (best)

Gene UPF3A, Length 1,791 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-204ENST00000475218 SLC33A1O00400 549 aaPredicted RBP11.34□□□□□ -0.59
UPF3A-204ENST00000475218 SH2D1BO14796 132 aa11.34□□□□□ -0.59
UPF3A-204ENST00000475218 SULT1B1O43704 296 aa11.34□□□□□ -0.59
UPF3A-204ENST00000475218 LALBAP00709 142 aa11.34□□□□□ -0.59
UPF3A-204ENST00000475218 DYNLT3P51808 116 aa11.34□□□□□ -0.59
UPF3A-204ENST00000475218 LPCAT4Q643R3 524 aa11.34□□□□□ -0.59
UPF3A-204ENST00000475218 LIAT1Q6ZQX7 453 aa11.34□□□□□ -0.59
UPF3A-204ENST00000475218 SERPINA12Q8IW75 414 aa11.34□□□□□ -0.59
UPF3A-204ENST00000475218 CNIH3Q8TBE1 160 aa11.34□□□□□ -0.59
UPF3A-204ENST00000475218 PPIL3Q9H2H8 161 aaKnown RBP11.34□□□□□ -0.59
UPF3A-204ENST00000475218 NDUFA13Q9P0J0 144 aa11.34□□□□□ -0.59
UPF3A-204ENST00000475218 HILPDAQ9Y5L2 63 aa11.34□□□□□ -0.59
UPF3A-204ENST00000475218 FAM90A22PA8MWA6 464 aa11.33□□□□□ -0.59
UPF3A-204ENST00000475218 BAG2O95816 211 aa11.33□□□□□ -0.59
UPF3A-204ENST00000475218 CSN2P05814 226 aa11.33□□□□□ -0.59
UPF3A-204ENST00000475218 HERPUD1Q15011 391 aa11.33□□□□□ -0.59
UPF3A-204ENST00000475218 PDLIM3Q53GG5 364 aaPredicted RBP11.33□□□□□ -0.59
UPF3A-204ENST00000475218 MINOS1Q5TGZ0 78 aa11.33□□□□□ -0.59
UPF3A-204ENST00000475218 OR2G6Q5TZ20 316 aa11.33□□□□□ -0.59
UPF3A-204ENST00000475218 ZNF691Q5VV52 312 aa11.33□□□□□ -0.59
UPF3A-204ENST00000475218 C11orf44Q8N8P7 122 aa11.33□□□□□ -0.59
UPF3A-204ENST00000475218 MRPL48Q96GC5 212 aaKnown RBP11.33□□□□□ -0.59
UPF3A-204ENST00000475218 CLEC7AQ9BXN2 247 aa11.33□□□□□ -0.59
UPF3A-204ENST00000475218 NPFFR1Q9GZQ6 430 aa11.33□□□□□ -0.59
UPF3A-204ENST00000475218 RAB18Q9NP72 206 aa11.33□□□□□ -0.59
UPF3A-204ENST00000475218 SMPD3Q9NY59 655 aaPredicted RBP11.33□□□□□ -0.59
UPF3A-204ENST00000475218 TAS2R4Q9NYW5 299 aa11.33□□□□□ -0.59
UPF3A-204ENST00000475218 MINOS1-NBL1R4GNA1 71 aa11.33□□□□□ -0.59
UPF3A-204ENST00000475218 ODAMA1E959 279 aa11.33□□□□□ -0.6
UPF3A-204ENST00000475218 FAM172BPA6NC97 362 aa11.33□□□□□ -0.6
UPF3A-204ENST00000475218 GABRPO00591 440 aa11.33□□□□□ -0.6
UPF3A-204ENST00000475218 IGLV1-47P01700 117 aa11.33□□□□□ -0.6
UPF3A-204ENST00000475218 HCKP08631 526 aa11.33□□□□□ -0.6
UPF3A-204ENST00000475218 CCDC159P0C7I6 412 aa11.33□□□□□ -0.6
UPF3A-204ENST00000475218 CGB3P0DN86 165 aa11.33□□□□□ -0.6
UPF3A-204ENST00000475218 CGB7P0DN87 165 aa11.33□□□□□ -0.6
UPF3A-204ENST00000475218 TMEM225BP0DP42 221 aa11.33□□□□□ -0.6
UPF3A-204ENST00000475218 CDK2P24941 298 aa11.33□□□□□ -0.6
UPF3A-204ENST00000475218 SOX2P48431 317 aa11.33□□□□□ -0.6
UPF3A-204ENST00000475218 GBX2P52951 348 aaPredicted RBP11.33□□□□□ -0.6
UPF3A-204ENST00000475218 MRPL28Q13084 256 aaKnown RBP11.33□□□□□ -0.6
UPF3A-204ENST00000475218 DOC2BQ14184 412 aa11.33□□□□□ -0.6
UPF3A-204ENST00000475218 C17orf58Q2M2W7 97 aa11.33□□□□□ -0.6
UPF3A-204ENST00000475218 LAIR2Q6ISS4 152 aa11.33□□□□□ -0.6
UPF3A-204ENST00000475218 HEPN1Q6WQI6 88 aa11.33□□□□□ -0.6
UPF3A-204ENST00000475218 ZNF485Q8NCK3 441 aa11.33□□□□□ -0.6
UPF3A-204ENST00000475218 OR5D14Q8NGL3 314 aa11.33□□□□□ -0.6
UPF3A-204ENST00000475218 OR2T6Q8NHC8 308 aa11.33□□□□□ -0.6
UPF3A-204ENST00000475218 FAM110DQ8TAY7 271 aaPredicted RBP11.33□□□□□ -0.6
UPF3A-204ENST00000475218 RDH12Q96NR8 316 aa11.33□□□□□ -0.6
UPF3A-204ENST00000475218 CDCA4Q9BXL8 241 aa11.33□□□□□ -0.6
UPF3A-204ENST00000475218 RHOFQ9HBH0 211 aa11.33□□□□□ -0.6
UPF3A-204ENST00000475218 ZNF286AQ9HBT8 521 aa11.33□□□□□ -0.6
UPF3A-204ENST00000475218 NEK6Q9HC98 313 aa11.33□□□□□ -0.6
UPF3A-204ENST00000475218 CLEC2DQ9UHP7 191 aa11.33□□□□□ -0.6
UPF3A-204ENST00000475218 DHDHQ9UQ10 334 aa11.33□□□□□ -0.6
UPF3A-204ENST00000475218 TRAV24A0A0B4J272 114 aa11.32□□□□□ -0.6
UPF3A-204ENST00000475218 BLCAPP62952 87 aa11.32□□□□□ -0.6
UPF3A-204ENST00000475218 SCN1BQ07699 218 aa11.32□□□□□ -0.6
UPF3A-204ENST00000475218 ATXN7L3Q14CW9 347 aaPredicted RBP11.32□□□□□ -0.6
UPF3A-204ENST00000475218 KLHL22Q53GT1 634 aa11.32□□□□□ -0.6
UPF3A-204ENST00000475218 ELP2Q6IA86 826 aa11.32□□□□□ -0.6
UPF3A-204ENST00000475218 Q8NFD4 153 aa11.32□□□□□ -0.6
UPF3A-204ENST00000475218 NRG4Q8WWG1 115 aa11.32□□□□□ -0.6
UPF3A-204ENST00000475218 ORAI1Q96D31 301 aa11.32□□□□□ -0.6
UPF3A-204ENST00000475218 VCX3AQ9NNX9 186 aa11.32□□□□□ -0.6
UPF3A-204ENST00000475218 TAS2R3Q9NYW6 316 aa11.32□□□□□ -0.6
UPF3A-204ENST00000475218 GLS2Q9UI32 602 aa11.32□□□□□ -0.6
UPF3A-204ENST00000475218 OCM2P0CE71 109 aa11.31□□□□□ -0.6
UPF3A-204ENST00000475218 OCMP0CE72 109 aaPredicted RBP11.31□□□□□ -0.6
UPF3A-204ENST00000475218 ZNF44P15621 663 aa11.31□□□□□ -0.6
UPF3A-204ENST00000475218 CD34P28906 385 aa11.31□□□□□ -0.6
UPF3A-204ENST00000475218 ADARB1P78563 741 aaKnown RBP11.31□□□□□ -0.6
UPF3A-204ENST00000475218 LRRC36Q1X8D7 754 aa11.31□□□□□ -0.6
UPF3A-204ENST00000475218 C2orf68Q2NKX9 166 aa11.31□□□□□ -0.6
UPF3A-204ENST00000475218 C11orf88Q6PI97 169 aa11.31□□□□□ -0.6
UPF3A-204ENST00000475218 ASCL4Q6XD76 172 aa11.31□□□□□ -0.6
UPF3A-204ENST00000475218 TRAPPC6BQ86SZ2 158 aa11.31□□□□□ -0.6
UPF3A-204ENST00000475218 ABHD12Q8N2K0 398 aa11.31□□□□□ -0.6
UPF3A-204ENST00000475218 PXT1Q8NFP0 134 aa11.31□□□□□ -0.6
UPF3A-204ENST00000475218 OR51T1Q8NGJ9 327 aa11.31□□□□□ -0.6
UPF3A-204ENST00000475218 OR13C5Q8NGS8 318 aa11.31□□□□□ -0.6
UPF3A-204ENST00000475218 OR10K1Q8NGX5 313 aa11.31□□□□□ -0.6
UPF3A-204ENST00000475218 TSEN15Q8WW01 171 aaKnown RBP11.31□□□□□ -0.6
UPF3A-204ENST00000475218 WNT10AQ9GZT5 417 aa11.31□□□□□ -0.6
UPF3A-204ENST00000475218 ING3Q9NXR8 418 aa11.31□□□□□ -0.6
UPF3A-204ENST00000475218 TRGV10A0A0A0MS01 117 aa11.31□□□□□ -0.6
UPF3A-204ENST00000475218 ADARB2-AS1A8MUL3 147 aa11.31□□□□□ -0.6
UPF3A-204ENST00000475218 LY6LH3BQJ8 138 aa11.31□□□□□ -0.6
UPF3A-204ENST00000475218 OGG1O15527 345 aa11.31□□□□□ -0.6
UPF3A-204ENST00000475218 VSIG10L2P0DP72 767 aa11.31□□□□□ -0.6
UPF3A-204ENST00000475218 CD24P25063 80 aa11.31□□□□□ -0.6
UPF3A-204ENST00000475218 MTNR1BP49286 362 aa11.31□□□□□ -0.6
UPF3A-204ENST00000475218 BDH1Q02338 343 aa11.31□□□□□ -0.6
UPF3A-204ENST00000475218 TMEM95Q3KNT9 176 aa11.31□□□□□ -0.6
UPF3A-204ENST00000475218 PIGYQ3MUY2 71 aa11.31□□□□□ -0.6
UPF3A-204ENST00000475218 CCDC58Q4VC31 144 aa11.31□□□□□ -0.6
UPF3A-204ENST00000475218 RPL22L1Q6P5R6 122 aaKnown RBP11.31□□□□□ -0.6
UPF3A-204ENST00000475218 C1QL4Q86Z23 238 aa11.31□□□□□ -0.6
UPF3A-204ENST00000475218 CHST4Q8NCG5 386 aa11.31□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 39.4 ms